Wall clock time and date at job start Fri Apr 10 2020 18:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00153 * 2 1 4 4 N 1.46498 * 109.46876 * 124.99759 * 3 2 1 5 5 C 1.46499 * 120.00459 * 269.99860 * 4 3 2 6 6 C 1.50694 * 109.47210 * 270.00579 * 5 4 3 7 7 H 1.08001 * 120.00386 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99937 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00253 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00375 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46940 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47235 * 120.00001 * 10 8 6 13 13 H 1.48499 * 109.47386 * 240.00216 * 10 8 6 14 14 C 1.34776 * 119.99885 * 90.00367 * 4 3 2 15 15 O 1.21283 * 120.00367 * 179.97438 * 14 4 3 16 16 C 1.50703 * 120.00193 * 359.97438 * 14 4 3 17 17 C 1.52999 * 109.47500 * 179.97438 * 16 14 4 18 18 C 1.50698 * 109.47009 * 180.02562 * 17 16 14 19 19 O 1.21274 * 120.00423 * 359.97438 * 18 17 16 20 20 N 1.34783 * 119.99922 * 180.02562 * 18 17 16 21 21 C 1.46919 * 120.63144 * 179.97438 * 20 18 17 22 22 C 1.53195 * 108.89273 * 233.55709 * 21 20 18 23 23 C 1.53070 * 109.29524 * 305.57804 * 22 21 20 24 24 O 1.42902 * 109.44395 * 181.23525 * 23 22 21 25 25 C 1.53039 * 109.65812 * 61.15209 * 23 22 21 26 26 C 1.46928 * 120.62874 * 0.02562 * 20 18 17 27 27 H 1.08001 * 119.99985 * 179.97438 * 1 2 3 28 28 H 1.07994 * 119.99943 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99924 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46753 * 5.00190 * 3 2 1 31 31 H 1.08999 * 109.47424 * 244.99819 * 3 2 1 32 32 H 1.08999 * 109.46701 * 30.00326 * 5 4 3 33 33 H 1.09002 * 109.47262 * 150.00295 * 5 4 3 34 34 H 0.96995 * 120.00416 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47024 * 59.99785 * 16 14 4 36 36 H 1.08997 * 109.47328 * 300.00235 * 16 14 4 37 37 H 1.09001 * 109.46917 * 60.00014 * 17 16 14 38 38 H 1.08997 * 109.47262 * 300.00569 * 17 16 14 39 39 H 1.09002 * 109.58751 * 353.41659 * 21 20 18 40 40 H 1.08996 * 109.58750 * 113.69843 * 21 20 18 41 41 H 1.08997 * 109.50046 * 65.38734 * 22 21 20 42 42 H 1.09003 * 109.49733 * 185.48713 * 22 21 20 43 43 H 1.09007 * 109.35101 * 301.12962 * 23 22 21 44 44 H 0.96703 * 113.99581 * 59.80054 * 24 23 22 45 45 H 1.09002 * 109.49876 * 178.74890 * 25 23 22 46 46 H 1.09005 * 109.52615 * 58.67140 * 25 23 22 47 47 H 1.08998 * 109.58787 * 246.16207 * 26 20 18 48 48 H 1.09007 * 109.58600 * 6.44520 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5589 1.8649 2.4249 6 6 2.8442 3.3435 2.4804 7 1 3.3040 3.8369 1.6368 8 6 2.5184 4.0666 3.6083 9 7 1.9581 3.4660 4.6355 10 14 2.8728 5.8994 3.6775 11 1 3.5016 6.3305 2.4031 12 1 1.6025 6.6419 3.8782 13 1 3.7955 6.1829 4.8060 14 6 4.2496 0.8661 0.9824 15 8 5.0199 0.8886 1.9190 16 6 4.6969 0.3173 -0.3479 17 6 6.1535 -0.1402 -0.2473 18 6 6.6008 -0.6883 -1.5779 19 8 5.8305 -0.7114 -2.5143 20 7 7.8568 -1.1540 -1.7270 21 6 8.3074 -1.6920 -3.0177 22 6 8.8792 -3.0961 -2.7975 23 6 9.9683 -3.0360 -1.7236 24 8 10.5239 -4.3391 -1.5361 25 6 9.3652 -2.5444 -0.4057 26 6 8.8010 -1.1343 -0.6014 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 1.4888 1.6966 2.5459 33 1 3.0989 1.3602 3.2260 34 1 1.7286 3.9747 5.4287 35 1 4.6120 1.0936 -1.1083 36 1 4.0678 -0.5297 -0.6217 37 1 6.2388 -0.9164 0.5131 38 1 6.7823 0.7070 0.0262 39 1 7.4640 -1.7448 -3.7061 40 1 9.0790 -1.0444 -3.4342 41 1 8.0840 -3.7654 -2.4694 42 1 9.3050 -3.4659 -3.7303 43 1 10.7525 -2.3493 -2.0425 44 1 10.9248 -4.7140 -2.3323 45 1 10.1380 -2.5238 0.3627 46 1 8.5644 -3.2170 -0.0983 47 1 9.6147 -0.4425 -0.8191 48 1 8.2837 -0.8167 0.3040 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359405508.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:06 Heat of formation + Delta-G solvation = -133.186195 kcal Electronic energy + Delta-G solvation = -27790.303987 eV Core-core repulsion = 23844.415439 eV Total energy + Delta-G solvation = -3945.888548 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.46857 -40.62561 -39.09208 -37.24825 -36.76235 -35.18334 -34.05392 -33.66361 -32.49039 -32.12279 -29.76802 -27.29704 -26.78102 -25.52971 -24.55364 -23.75956 -21.87365 -21.12788 -19.99337 -19.86075 -18.70704 -18.54819 -18.22351 -17.50416 -17.17275 -17.04540 -16.67979 -16.17489 -16.15922 -15.62005 -15.60865 -15.25138 -14.96760 -14.71648 -14.34315 -14.29669 -14.04047 -14.00676 -13.65594 -13.40813 -13.34694 -12.98098 -12.87985 -12.83503 -12.72362 -12.55256 -12.48983 -12.31874 -12.26665 -12.20242 -12.10263 -11.64279 -11.50353 -10.88949 -10.80004 -10.64219 -10.61591 -10.31894 -9.76636 -9.46307 -8.21441 -6.36063 1.32178 1.37522 1.39163 1.51409 1.52756 1.81351 1.87848 2.35913 2.53206 3.08190 3.23674 3.41035 3.68504 3.77799 3.85714 3.92770 4.02189 4.05958 4.12298 4.16272 4.24502 4.27035 4.43168 4.44942 4.58803 4.67963 4.69940 4.79582 4.81205 4.83348 4.86578 4.92458 4.95358 5.03839 5.05910 5.07885 5.24072 5.27407 5.50656 5.53050 5.70572 5.76576 5.95428 6.07409 6.26047 6.69666 6.77894 6.89185 7.06919 7.28396 7.46006 8.86031 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015386 B = 0.002671 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.411276 B =10480.998808 C =11504.192962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.184 4.184 3 C 0.133 3.867 4 N -0.599 5.599 5 C 0.264 3.736 6 C -0.540 4.540 7 H 0.054 0.946 8 C 0.007 3.993 9 N -0.929 5.929 10 Si 0.968 3.032 11 H -0.266 1.266 12 H -0.271 1.271 13 H -0.280 1.280 14 C 0.500 3.500 15 O -0.589 6.589 16 C -0.109 4.109 17 C -0.119 4.119 18 C 0.522 3.478 19 O -0.573 6.573 20 N -0.613 5.613 21 C 0.110 3.890 22 C -0.158 4.158 23 C 0.107 3.893 24 O -0.586 6.586 25 C -0.130 4.130 26 C 0.105 3.895 27 H 0.116 0.884 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.019 0.981 33 H 0.000 1.000 34 H 0.267 0.733 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.054 0.946 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.395 0.605 45 H 0.092 0.908 46 H 0.057 0.943 47 H 0.096 0.904 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.927 -12.669 -17.810 25.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.203 4.203 3 C 0.011 3.989 4 N -0.329 5.329 5 C 0.142 3.858 6 C -0.579 4.579 7 H 0.072 0.928 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.792 3.208 11 H -0.191 1.191 12 H -0.196 1.196 13 H -0.206 1.206 14 C 0.289 3.711 15 O -0.471 6.471 16 C -0.149 4.149 17 C -0.159 4.159 18 C 0.311 3.689 19 O -0.453 6.453 20 N -0.346 5.346 21 C -0.012 4.012 22 C -0.196 4.196 23 C 0.048 3.952 24 O -0.395 6.395 25 C -0.168 4.168 26 C -0.017 4.017 27 H 0.134 0.866 28 H 0.118 0.882 29 H 0.130 0.870 30 H 0.096 0.904 31 H 0.120 0.880 32 H 0.037 0.963 33 H 0.018 0.982 34 H 0.076 0.924 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.121 0.879 43 H 0.094 0.906 44 H 0.246 0.754 45 H 0.111 0.889 46 H 0.076 0.924 47 H 0.114 0.886 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.630 -12.529 -17.045 25.165 hybrid contribution -0.024 0.701 0.110 0.710 sum 13.606 -11.828 -16.934 24.735 Atomic orbital electron populations 1.24041 0.95471 1.02894 0.98378 1.23328 0.96869 0.98302 1.01834 1.20802 0.92750 0.96258 0.89084 1.48209 1.11843 1.59772 1.13063 1.18711 0.93835 0.92806 0.80417 1.21724 1.40430 0.94369 1.01355 0.92807 1.25859 0.94681 1.03739 0.94864 1.70064 1.42881 1.38058 1.05847 0.85365 0.78176 0.79025 0.78220 1.19060 1.19611 1.20625 1.21170 0.81525 0.77566 0.90831 1.90623 1.53698 1.58604 1.44153 1.21334 0.96938 1.03083 0.93544 1.21348 0.96426 1.03305 0.94797 1.20713 0.81407 0.76822 0.89931 1.90662 1.53754 1.57785 1.43129 1.48229 1.11665 1.61463 1.13289 1.21644 1.00359 0.94431 0.84808 1.22606 0.99409 0.96626 1.00967 1.21790 0.94129 0.84720 0.94535 1.86500 1.78680 1.33050 1.41234 1.21869 1.01124 0.95897 0.97924 1.21940 0.93182 0.97169 0.89458 0.86553 0.88205 0.87012 0.90389 0.88005 0.96288 0.98220 0.92426 0.87777 0.87624 0.87893 0.87790 0.90225 0.89234 0.92708 0.87927 0.90561 0.75450 0.88908 0.92402 0.88560 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.39 14.32 67.78 0.97 -3.42 16 2 C -0.18 -5.36 9.74 25.65 0.25 -5.11 16 3 C 0.13 4.46 5.65 85.63 0.48 4.95 16 4 N -0.60 -26.06 2.44 -830.52 -2.03 -28.08 16 5 C 0.26 14.43 5.16 85.63 0.44 14.87 16 6 C -0.54 -31.32 9.39 25.60 0.24 -31.08 16 7 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 8 C 0.01 0.43 5.46 84.65 0.46 0.89 16 9 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 10 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 14 C 0.50 20.80 7.67 87.66 0.67 21.47 16 15 O -0.59 -29.39 15.56 -3.04 -0.05 -29.44 16 16 C -0.11 -3.30 3.54 29.85 0.11 -3.19 16 17 C -0.12 -3.12 3.34 29.85 0.10 -3.02 16 18 C 0.52 13.07 7.70 87.66 0.67 13.74 16 19 O -0.57 -17.69 15.39 -3.01 -0.05 -17.74 16 20 N -0.61 -11.47 2.98 -819.01 -2.44 -13.91 16 21 C 0.11 1.63 6.43 86.36 0.56 2.19 16 22 C -0.16 -1.83 5.71 30.68 0.18 -1.66 16 23 C 0.11 1.23 3.43 30.63 0.10 1.33 16 24 O -0.59 -7.65 13.32 -148.98 -1.98 -9.64 16 25 C -0.13 -1.83 5.73 30.65 0.18 -1.65 16 26 C 0.10 1.49 6.34 86.34 0.55 2.04 16 27 H 0.12 2.48 8.06 -2.91 -0.02 2.45 16 28 H 0.10 2.55 7.84 -2.91 -0.02 2.52 16 29 H 0.11 3.07 7.83 -2.91 -0.02 3.05 16 30 H 0.08 2.72 7.72 -2.39 -0.02 2.71 16 31 H 0.10 2.86 6.44 -2.39 -0.02 2.85 16 32 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 33 H 0.00 -0.02 7.42 -2.39 -0.02 -0.04 16 34 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.10 2.98 7.36 -2.39 -0.02 2.97 16 36 H 0.11 2.96 7.73 -2.39 -0.02 2.94 16 37 H 0.10 2.66 7.65 -2.39 -0.02 2.64 16 38 H 0.10 2.70 7.90 -2.39 -0.02 2.68 16 39 H 0.08 1.50 7.00 -2.39 -0.02 1.48 16 40 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 44 H 0.40 1.66 9.08 -74.06 -0.67 0.99 16 45 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 47 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.10 1.49 5.93 -2.38 -0.01 1.47 16 Total: -1.00 -78.90 392.59 2.01 -76.90 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.28 Total: 18.71 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 5.96 Total: 12.34 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -4.18 Total: -98.16 kcal Atomic # 8 Polarization: -54.73 SS G_CDS: -2.08 Total: -56.81 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -78.90 2.01 -76.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359405508.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.289 kcal (2) G-P(sol) polarization free energy of solvation -78.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds