Wall clock time and date at job start Fri Apr 10 2020 18:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46772 * 2 1 4 4 C 1.50697 * 109.47097 * 120.00256 * 2 1 3 5 5 H 1.07993 * 120.00172 * 120.00307 * 4 2 1 6 6 C 1.37882 * 119.99874 * 299.99830 * 4 2 1 7 7 N 1.31518 * 119.99824 * 8.33583 * 6 4 2 8 8 Si 1.86796 * 120.00016 * 188.06005 * 6 4 2 9 9 H 1.48506 * 109.46896 * 265.36203 * 8 6 4 10 10 H 1.48494 * 109.47470 * 25.36061 * 8 6 4 11 11 H 1.48502 * 109.47072 * 145.36477 * 8 6 4 12 12 C 1.53005 * 109.47045 * 240.00131 * 2 1 3 13 13 N 1.46494 * 109.46851 * 59.99726 * 12 2 1 14 14 C 1.34783 * 119.99475 * 179.97438 * 13 12 2 15 15 O 1.21345 * 120.00411 * 0.02562 * 14 13 12 16 16 C 1.49457 * 119.99803 * 180.02562 * 14 13 12 17 17 O 1.21348 * 120.00225 * 0.02562 * 16 14 13 18 18 N 1.34775 * 120.00038 * 180.02562 * 16 14 13 19 19 C 1.46493 * 120.00064 * 180.02562 * 18 16 14 20 20 H 1.09000 * 110.46166 * 20.91319 * 19 18 16 21 21 C 1.54510 * 110.51124 * 258.30742 * 19 18 16 22 22 C 1.54478 * 104.06477 * 241.35317 * 21 19 18 23 23 O 1.44426 * 104.80177 * 23.98267 * 22 21 19 24 24 C 1.44789 * 105.29493 * 319.44923 * 23 22 21 25 25 H 1.08997 * 110.42495 * 281.77793 * 24 23 22 26 26 C 1.53000 * 110.48641 * 159.32677 * 24 23 22 27 27 C 1.52998 * 117.49600 * 138.72382 * 26 24 23 28 28 C 1.52995 * 60.00375 * 252.50955 * 27 26 24 29 29 H 1.08994 * 109.46961 * 303.12408 * 1 2 3 30 30 H 1.09001 * 109.47268 * 63.13069 * 1 2 3 31 31 H 1.09000 * 109.46685 * 183.12635 * 1 2 3 32 32 H 1.09007 * 109.47163 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47273 * 300.00059 * 3 2 1 34 34 H 1.09004 * 109.47626 * 59.99850 * 3 2 1 35 35 H 0.97001 * 119.99762 * 179.72606 * 7 6 4 36 36 H 1.08993 * 109.46968 * 179.97438 * 12 2 1 37 37 H 1.09003 * 109.46834 * 300.00192 * 12 2 1 38 38 H 0.96998 * 120.00705 * 359.97438 * 13 12 2 39 39 H 0.97010 * 119.99845 * 0.02562 * 18 16 14 40 40 H 1.09000 * 110.51003 * 0.02562 * 21 19 18 41 41 H 1.08998 * 110.50901 * 122.57281 * 21 19 18 42 42 H 1.09007 * 110.36687 * 142.81000 * 22 21 19 43 43 H 1.08997 * 110.37745 * 265.03582 * 22 21 19 44 44 H 1.09000 * 115.55090 * 284.43333 * 26 24 23 45 45 H 1.09005 * 117.50157 * 0.02562 * 27 26 24 46 46 H 1.09002 * 117.49844 * 145.01523 * 27 26 24 47 47 H 1.08991 * 117.50371 * 252.51584 * 28 27 26 48 48 H 1.09007 * 117.51361 * 107.47723 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.8147 0.7257 2.6084 8 14 2.4987 -0.9772 4.0012 9 1 1.6254 -2.0451 4.5510 10 1 3.8168 -1.5552 3.6355 11 1 2.6894 0.0820 5.0244 12 6 2.0401 -0.7212 -1.2493 13 7 1.5517 -0.0306 -2.4454 14 6 1.8777 -0.4908 -3.6695 15 8 2.5753 -1.4774 -3.7809 16 6 1.3799 0.2140 -4.8898 17 8 0.6826 1.2009 -4.7785 18 7 1.7055 -0.2464 -6.1139 19 6 1.2181 0.4448 -7.3100 20 1 0.9397 1.4710 -7.0702 21 6 0.0184 -0.3126 -7.9219 22 6 0.5046 -0.7081 -9.3338 23 8 1.9454 -0.7279 -9.2357 24 6 2.2887 0.4205 -8.4234 25 1 2.2406 1.3339 -9.0162 26 6 3.6833 0.2502 -7.8175 27 6 4.5978 1.4765 -7.7940 28 6 4.8806 0.3301 -8.7669 29 1 -0.3633 0.5615 0.8606 30 1 -0.3634 0.4645 -0.9167 31 1 -0.3633 -1.0262 0.0560 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 0.5774 1.0543 3.4896 36 1 3.1300 -0.7208 -1.2495 37 1 1.6767 -1.7489 -1.2493 38 1 0.9937 0.7578 -2.3564 39 1 2.2626 -1.0356 -6.2029 40 1 -0.2123 -1.2011 -7.3341 41 1 -0.8530 0.3392 -7.9845 42 1 0.1290 -1.6957 -9.6016 43 1 0.1826 0.0312 -10.0670 44 1 3.7505 -0.4444 -6.9801 45 1 4.2058 2.4048 -8.2097 46 1 5.2668 1.5892 -6.9408 47 1 5.7354 -0.3115 -8.5539 48 1 4.6745 0.5037 -9.8232 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422432000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:20 Heat of formation + Delta-G solvation = -88.650483 kcal Electronic energy + Delta-G solvation = -28187.056332 eV Core-core repulsion = 24243.098998 eV Total energy + Delta-G solvation = -3943.957335 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.91339 -39.76218 -38.19908 -36.95642 -36.50109 -34.85888 -33.30320 -31.23137 -30.91555 -29.16950 -26.36585 -25.74451 -25.30957 -24.15320 -23.30769 -22.67957 -21.76682 -20.69898 -19.96293 -19.07846 -18.41261 -17.01821 -16.79329 -16.12019 -15.98907 -15.84666 -15.64530 -15.19290 -14.86386 -14.72744 -14.48021 -14.03898 -13.99041 -13.53684 -13.00925 -12.94600 -12.69569 -12.28869 -12.23993 -12.03618 -11.83432 -11.76821 -11.52325 -11.45741 -11.24506 -11.16712 -10.89701 -10.71568 -10.63455 -10.42836 -10.41540 -10.25541 -10.19615 -9.66868 -9.57597 -9.34675 -9.25209 -8.84484 -8.62044 -8.37108 -6.04334 -4.14262 1.60627 2.49820 3.14583 3.26578 3.34497 3.38675 3.42032 3.81857 3.86714 4.07995 4.21902 4.38036 4.50737 4.65163 4.67424 4.75290 4.77046 4.86958 4.95331 5.11921 5.21615 5.28494 5.35603 5.39007 5.48436 5.62270 5.66569 5.84085 5.87857 6.09049 6.11336 6.21563 6.42195 6.44735 6.60768 6.79240 6.82830 6.92128 6.97817 7.06094 7.31599 7.52659 7.64069 7.68879 7.92876 7.95381 8.12789 8.30486 8.39390 8.85588 9.51316 10.96580 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.023783 B = 0.002503 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.031555 B =11183.749486 C =11637.423273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.510 4.510 5 H 0.059 0.941 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.892 3.108 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.286 1.286 12 C 0.128 3.872 13 N -0.679 5.679 14 C 0.495 3.505 15 O -0.534 6.534 16 C 0.510 3.490 17 O -0.520 6.520 18 N -0.693 5.693 19 C 0.116 3.884 20 H 0.114 0.886 21 C -0.170 4.170 22 C 0.044 3.956 23 O -0.364 6.364 24 C 0.099 3.901 25 H 0.084 0.916 26 C -0.157 4.157 27 C -0.169 4.169 28 C -0.166 4.166 29 H 0.093 0.907 30 H 0.005 0.995 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.011 0.989 34 H 0.078 0.922 35 H 0.260 0.740 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.411 0.589 39 H 0.415 0.585 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.114 0.886 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.061 1.393 -23.139 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.548 4.548 5 H 0.077 0.923 6 C -0.133 4.133 7 N -0.521 5.521 8 Si 0.720 3.280 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.212 1.212 12 C 0.006 3.994 13 N -0.331 5.331 14 C 0.274 3.726 15 O -0.413 6.413 16 C 0.291 3.709 17 O -0.395 6.395 18 N -0.348 5.348 19 C 0.010 3.990 20 H 0.132 0.868 21 C -0.209 4.209 22 C -0.032 4.032 23 O -0.283 6.283 24 C 0.040 3.960 25 H 0.101 0.899 26 C -0.176 4.176 27 C -0.206 4.206 28 C -0.203 4.203 29 H 0.112 0.888 30 H 0.024 0.976 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.030 0.970 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.248 0.752 39 H 0.253 0.747 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.081 0.919 44 H 0.132 0.868 45 H 0.114 0.886 46 H 0.118 0.882 47 H 0.115 0.885 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.112 1.364 -23.034 23.101 hybrid contribution 0.140 -0.275 0.960 1.008 sum 1.252 1.089 -22.074 22.136 Atomic orbital electron populations 1.21940 0.97378 0.99982 0.99975 1.18381 0.93171 0.92613 0.90290 1.21808 0.98691 0.98312 1.00036 1.20936 1.31700 1.12441 0.89750 0.92320 1.24878 0.94573 0.95051 0.98845 1.69832 1.30832 1.28146 1.23249 0.86573 0.79958 0.78768 0.82678 1.20801 1.19814 1.21169 1.21944 0.98524 0.96088 0.82830 1.46228 1.50354 1.31390 1.05139 1.19935 0.82464 0.85254 0.84899 1.90730 1.37886 1.25910 1.86739 1.20543 0.80736 0.84556 0.85036 1.90744 1.36555 1.25460 1.86767 1.45793 1.52869 1.31961 1.04191 1.22372 0.93146 0.98582 0.84877 0.86778 1.23447 0.98537 1.01975 0.96914 1.23415 0.81344 1.02519 0.95972 1.89267 1.20857 1.46735 1.71445 1.22875 0.92850 0.90073 0.90156 0.89856 1.22161 0.89788 1.03190 1.02416 1.22981 1.02381 0.92763 1.02441 1.22879 0.98961 1.01779 0.96683 0.88806 0.97620 0.95310 0.95175 0.97015 0.90343 0.92955 0.91989 0.91958 0.75187 0.74677 0.89605 0.89359 0.88672 0.91949 0.86773 0.88596 0.88152 0.88467 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.06 37.16 0.30 -2.80 16 2 C 0.06 1.29 0.51 -155.66 -0.08 1.22 16 3 C -0.13 -2.94 8.08 37.15 0.30 -2.64 16 4 C -0.51 -13.18 8.00 -34.44 -0.28 -13.45 16 5 H 0.06 1.52 7.76 -52.49 -0.41 1.11 16 6 C 0.07 1.78 5.11 -17.82 -0.09 1.69 16 7 N -0.88 -23.46 9.48 55.43 0.53 -22.93 16 8 Si 0.89 20.51 29.54 -169.99 -5.02 15.48 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.13 2.66 4.50 -4.04 -0.02 2.64 16 13 N -0.68 -12.47 4.93 -60.73 -0.30 -12.77 16 14 C 0.50 8.57 7.89 -11.58 -0.09 8.47 16 15 O -0.53 -10.13 16.48 5.50 0.09 -10.04 16 16 C 0.51 7.60 7.89 -11.58 -0.09 7.51 16 17 O -0.52 -8.64 15.96 5.50 0.09 -8.55 16 18 N -0.69 -8.13 3.97 -52.72 -0.21 -8.34 16 19 C 0.12 1.12 3.50 -66.36 -0.23 0.88 16 20 H 0.11 1.17 7.24 -51.93 -0.38 0.79 16 21 C -0.17 -1.37 6.88 -25.16 -0.17 -1.55 16 22 C 0.04 0.32 7.63 37.93 0.29 0.61 16 23 O -0.36 -3.50 11.36 -35.23 -0.40 -3.91 16 24 C 0.10 0.86 3.40 -25.95 -0.09 0.77 16 25 H 0.08 0.62 8.03 -51.93 -0.42 0.20 16 26 C -0.16 -1.45 4.98 -90.62 -0.45 -1.90 16 27 C -0.17 -1.39 10.19 -26.73 -0.27 -1.66 16 28 C -0.17 -1.35 10.25 -26.73 -0.27 -1.62 16 29 H 0.09 2.37 5.89 -51.93 -0.31 2.06 16 30 H 0.00 0.10 6.78 -51.93 -0.35 -0.25 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.01 0.22 6.86 -51.93 -0.36 -0.13 16 34 H 0.08 1.94 6.41 -51.93 -0.33 1.61 16 35 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.41 7.42 5.63 -40.82 -0.23 7.19 16 39 H 0.41 4.75 6.60 -40.82 -0.27 4.49 16 40 H 0.09 0.77 7.96 -51.93 -0.41 0.36 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.10 0.59 8.14 -51.92 -0.42 0.16 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.11 1.17 6.04 -51.93 -0.31 0.86 16 45 H 0.10 0.69 8.12 -51.93 -0.42 0.27 16 46 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 382.96 15.07 5.77 5.77 Total: -1.00 -28.46 382.96 -8.26 -36.73 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -7.56 Total: 10.37 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -1.25 Total: -1.82 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.02 Total: -44.04 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.22 Total: -22.49 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.46 -8.26 -36.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422432000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.925 kcal (2) G-P(sol) polarization free energy of solvation -28.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds