Wall clock time and date at job start Fri Apr 10 2020 18:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35460 * 117.00067 * 2 1 4 4 N 1.32425 * 119.11812 * 0.02562 * 3 2 1 5 5 C 1.32132 * 120.98251 * 179.97438 * 4 3 2 6 6 C 1.38805 * 119.21639 * 359.97438 * 5 4 3 7 7 C 1.39464 * 118.38894 * 0.28008 * 6 5 4 8 8 C 1.48465 * 120.51762 * 179.70616 * 7 6 5 9 9 O 1.21476 * 119.99793 * 352.90786 * 8 7 6 10 10 N 1.34778 * 120.00037 * 172.91086 * 8 7 6 11 11 C 1.46505 * 120.00083 * 2.26607 * 10 8 7 12 12 C 1.46499 * 119.99979 * 182.26876 * 10 8 7 13 13 C 1.52992 * 109.47396 * 89.99558 * 12 10 8 14 14 O 1.42907 * 109.46834 * 64.99917 * 13 12 10 15 15 C 1.42904 * 113.99961 * 180.02562 * 14 13 12 16 16 C 1.52993 * 109.47097 * 180.02562 * 15 14 13 17 17 N 1.46505 * 109.47445 * 64.99953 * 16 15 14 18 18 C 1.36930 * 119.99907 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00291 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99754 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99903 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99926 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47627 * 59.99918 * 22 20 18 24 24 H 1.48506 * 109.47150 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47349 * 300.00024 * 22 20 18 26 26 N 1.32092 * 119.11731 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47315 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47173 * 299.99843 * 1 2 3 29 29 H 1.08994 * 109.47625 * 59.99886 * 1 2 3 30 30 H 1.07990 * 120.39246 * 180.02562 * 5 4 3 31 31 H 1.08006 * 120.80887 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.47170 * 83.83135 * 11 10 8 33 33 H 1.08998 * 109.47193 * 203.83649 * 11 10 8 34 34 H 1.09000 * 109.46703 * 323.83548 * 11 10 8 35 35 H 1.08997 * 109.46987 * 210.00142 * 12 10 8 36 36 H 1.09001 * 109.46537 * 329.99349 * 12 10 8 37 37 H 1.08995 * 109.47304 * 184.99867 * 13 12 10 38 38 H 1.09005 * 109.47452 * 305.00443 * 13 12 10 39 39 H 1.09007 * 109.46774 * 300.00146 * 15 14 13 40 40 H 1.09000 * 109.47321 * 59.99662 * 15 14 13 41 41 H 1.09003 * 109.47131 * 184.99959 * 16 15 14 42 42 H 1.08995 * 109.47393 * 304.99755 * 16 15 14 43 43 H 0.97001 * 119.99457 * 0.02562 * 17 16 15 44 44 H 0.97004 * 119.99659 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2069 0.0000 4 7 1.3057 2.3063 0.0005 5 6 1.8670 3.5025 0.0010 6 6 3.2515 3.6013 0.0016 7 6 4.0002 2.4247 -0.0044 8 6 5.4840 2.4753 -0.0107 9 8 6.0549 3.5396 -0.1405 10 7 6.1976 1.3403 0.1276 11 6 5.5099 0.0510 0.2342 12 6 7.6608 1.3957 0.1713 13 6 8.1219 1.5595 1.6209 14 8 7.7652 0.3951 2.3686 15 6 8.1521 0.4460 3.7433 16 6 7.7227 -0.8456 4.4421 17 7 8.4600 -1.9768 3.8736 18 6 8.2401 -3.2435 4.3448 19 1 7.5235 -3.4087 5.1358 20 6 8.9382 -4.3155 3.8058 21 7 9.8119 -4.1141 2.8422 22 14 8.6378 -6.0436 4.4481 23 1 7.2120 -6.4060 4.2459 24 1 9.5017 -7.0021 3.7130 25 1 8.9613 -6.0967 5.8965 26 7 3.3640 1.2557 -0.0005 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.2558 4.3928 0.0019 31 1 3.7373 4.5659 0.0024 32 1 5.2761 -0.3197 -0.7638 33 1 6.1548 -0.6636 0.7455 34 1 4.5870 0.1773 0.8003 35 1 8.0718 0.4732 -0.2387 36 1 8.0100 2.2429 -0.4190 37 1 9.2038 1.6898 1.6455 38 1 7.6405 2.4340 2.0588 39 1 9.2347 0.5534 3.8123 40 1 7.6711 1.2973 4.2249 41 1 7.9377 -0.7707 5.5081 42 1 6.6534 -0.9990 4.2970 43 1 9.1038 -1.8284 3.1635 44 1 10.3000 -4.8631 2.4658 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755873960.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:40 Heat of formation + Delta-G solvation = -46.390071 kcal Electronic energy + Delta-G solvation = -27447.840589 eV Core-core repulsion = 23402.175460 eV Total energy + Delta-G solvation = -4045.665129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.58847 -40.93402 -39.33652 -38.95867 -36.97468 -36.22715 -35.11074 -33.40452 -32.63828 -31.26150 -29.32168 -28.53064 -27.79146 -26.34556 -25.49880 -25.10706 -23.75534 -22.79798 -21.36708 -19.43443 -19.31627 -19.22980 -17.97576 -17.70300 -17.57349 -17.34832 -16.95045 -16.71740 -16.61393 -16.16635 -15.64982 -15.60231 -15.27910 -15.01069 -14.96537 -14.62719 -14.49295 -14.25424 -13.84802 -13.51427 -13.21740 -13.06035 -12.88642 -12.78429 -12.70987 -12.57989 -12.38045 -12.21270 -12.14244 -11.96245 -11.86605 -11.69812 -11.60135 -10.94630 -10.53567 -10.23006 -10.15928 -9.73163 -8.97346 -7.91757 -5.20444 -0.68301 -0.11097 1.38089 1.47966 1.51667 1.51788 1.57675 1.79989 2.58169 2.62637 2.77147 2.82236 3.12091 3.41684 3.47811 3.81074 3.95573 4.03675 4.06714 4.17944 4.27442 4.37051 4.40173 4.41293 4.43262 4.46298 4.55031 4.58719 4.65312 4.71641 4.72286 4.84323 4.95712 4.99253 5.12981 5.21484 5.37528 5.49617 5.50260 6.01881 6.12377 6.28768 6.35245 6.70679 6.89083 7.36239 8.11864 8.36954 9.31627 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.003032 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.288228 B = 9231.459287 C =10790.940600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.308 6.308 3 C 0.480 3.520 4 N -0.556 5.556 5 C 0.203 3.797 6 C -0.202 4.202 7 C 0.149 3.851 8 C 0.564 3.436 9 O -0.549 6.549 10 N -0.580 5.580 11 C 0.090 3.910 12 C 0.115 3.885 13 C 0.046 3.954 14 O -0.394 6.394 15 C 0.067 3.933 16 C 0.151 3.849 17 N -0.739 5.739 18 C -0.248 4.248 19 H 0.074 0.926 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.975 3.025 23 H -0.279 1.279 24 H -0.294 1.294 25 H -0.277 1.277 26 N -0.515 5.515 27 H 0.126 0.874 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.231 0.769 31 H 0.181 0.819 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.018 0.982 43 H 0.376 0.624 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.222 18.938 -7.715 27.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.209 6.209 3 C 0.178 3.822 4 N -0.286 5.286 5 C 0.036 3.964 6 C -0.225 4.225 7 C 0.003 3.997 8 C 0.350 3.650 9 O -0.427 6.427 10 N -0.309 5.309 11 C -0.052 4.052 12 C -0.007 4.007 13 C -0.031 4.031 14 O -0.314 6.314 15 C -0.009 4.009 16 C 0.025 3.975 17 N -0.382 5.382 18 C -0.380 4.380 19 H 0.092 0.908 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.803 3.197 23 H -0.205 1.205 24 H -0.220 1.220 25 H -0.203 1.203 26 N -0.245 5.245 27 H 0.144 0.856 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.247 0.753 31 H 0.199 0.801 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.036 0.964 43 H 0.208 0.792 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.468 17.948 -7.748 26.893 hybrid contribution 0.708 -0.241 0.168 0.767 sum -17.760 17.707 -7.580 26.200 Atomic orbital electron populations 1.23284 0.73492 1.05414 1.03243 1.86120 1.25540 1.22502 1.86741 1.21010 0.85990 0.85724 0.89465 1.68122 1.41425 0.99726 1.19339 1.23913 0.91981 0.95101 0.85383 1.23050 0.96219 1.00504 1.02724 1.21425 0.94328 0.89232 0.94720 1.18037 0.85567 0.83877 0.77517 1.90754 1.70767 1.29416 1.51800 1.47812 1.07286 1.07544 1.68266 1.22261 0.98203 0.82667 1.02118 1.21766 0.78487 1.04953 0.95519 1.22967 1.00025 0.87924 0.92214 1.88000 1.81306 1.40338 1.21737 1.22641 0.98941 0.97337 0.82025 1.20846 0.94874 0.86325 0.95470 1.42459 1.48610 1.02799 1.44375 1.19615 1.18090 0.85630 1.14678 0.90787 1.25572 0.99646 1.01872 0.99617 1.69828 1.30386 1.31201 1.30440 0.85202 0.77294 0.79570 0.77624 1.20491 1.22043 1.20274 1.68067 1.08322 1.28906 1.19183 0.85632 0.91439 0.91160 0.75314 0.80138 0.92317 0.92231 0.88291 0.88878 0.86930 0.90825 0.93248 0.93109 0.91043 0.93921 0.96384 0.79216 0.94038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.36 113.37 1.17 1.72 16 2 O -0.31 -7.08 10.55 -87.58 -0.92 -8.00 16 3 C 0.48 11.40 8.48 180.60 1.53 12.93 16 4 N -0.56 -10.11 9.20 -313.46 -2.88 -13.00 16 5 C 0.20 2.49 11.30 84.78 0.96 3.45 16 6 C -0.20 -3.31 9.71 22.70 0.22 -3.09 16 7 C 0.15 3.60 6.65 41.98 0.28 3.88 16 8 C 0.56 15.58 7.68 86.97 0.67 16.24 16 9 O -0.55 -16.29 16.01 -3.64 -0.06 -16.35 16 10 N -0.58 -16.43 2.84 -849.49 -2.41 -18.84 16 11 C 0.09 2.70 9.12 127.77 1.16 3.86 16 12 C 0.11 3.02 5.80 86.38 0.50 3.52 16 13 C 0.05 1.28 6.28 71.98 0.45 1.73 16 14 O -0.39 -14.03 9.23 -148.98 -1.38 -15.41 16 15 C 0.07 2.28 6.07 71.98 0.44 2.72 16 16 C 0.15 6.36 6.64 86.38 0.57 6.93 16 17 N -0.74 -39.40 5.55 -343.45 -1.91 -41.31 16 18 C -0.25 -14.38 9.99 84.04 0.84 -13.54 16 19 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 20 C -0.07 -4.41 5.50 84.86 0.47 -3.95 16 21 N -0.97 -60.64 13.06 21.65 0.28 -60.36 16 22 Si 0.97 47.11 29.55 68.60 2.03 49.14 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 26 N -0.52 -13.58 6.25 -302.70 -1.89 -15.47 16 27 H 0.13 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.07 0.84 8.09 -2.38 -0.02 0.82 16 29 H 0.07 0.82 8.09 -2.39 -0.02 0.81 16 30 H 0.23 0.41 8.06 -2.92 -0.02 0.38 16 31 H 0.18 2.29 7.75 -2.91 -0.02 2.26 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.06 2.07 7.25 -2.39 -0.02 2.05 16 34 H 0.10 3.10 5.25 -2.42 -0.01 3.09 16 35 H 0.09 2.48 8.07 -2.39 -0.02 2.46 16 36 H 0.11 2.62 7.39 -2.39 -0.02 2.60 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.38 21.37 7.67 -92.71 -0.71 20.66 16 44 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -75.95 376.04 0.43 -75.51 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.31 Total: 27.68 kcal Atomic # 6 Polarization: 27.14 SS G_CDS: 9.27 Total: 36.41 kcal Atomic # 7 Polarization: -140.16 SS G_CDS: -8.81 Total: -148.97 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -2.36 Total: -39.77 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -75.95 0.43 -75.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755873960.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.121 kcal (2) G-P(sol) polarization free energy of solvation -75.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds