Wall clock time and date at job start Fri Apr 10 2020 18:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46501 * 119.99963 * 2 1 4 4 C 1.52998 * 109.46935 * 89.99766 * 3 2 1 5 5 O 1.42903 * 109.47599 * 64.99652 * 4 3 2 6 6 C 1.42891 * 114.00128 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46896 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.47209 * 65.00469 * 7 6 5 9 9 C 1.36934 * 120.00430 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00083 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00531 * 179.97438 * 9 8 7 12 12 N 1.31625 * 119.99780 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00343 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47242 * 59.99830 * 13 11 9 15 15 H 1.48503 * 109.47220 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.46903 * 299.99932 * 13 11 9 17 17 C 1.34780 * 119.99732 * 179.97438 * 2 1 3 18 18 O 1.21678 * 119.99473 * 186.21264 * 17 2 1 19 19 C 1.46805 * 120.00153 * 6.22022 * 17 2 1 20 20 C 1.36352 * 125.84853 * 187.74976 * 19 17 2 21 21 C 1.41311 * 107.00768 * 179.84726 * 20 19 17 22 22 C 1.47391 * 126.45883 * 180.13554 * 21 20 19 23 23 N 1.34783 * 119.99855 * 180.30162 * 22 21 20 24 24 O 1.21612 * 120.00151 * 0.30326 * 22 21 20 25 25 C 1.38200 * 107.07599 * 0.41426 * 21 20 19 26 26 N 1.34265 * 108.39882 * 359.74443 * 25 21 20 27 27 H 0.97001 * 125.39152 * 180.02562 * 26 25 21 28 28 H 1.09002 * 109.46683 * 95.79029 * 1 2 3 29 29 H 1.08992 * 109.47247 * 215.79080 * 1 2 3 30 30 H 1.08995 * 109.47172 * 335.79777 * 1 2 3 31 31 H 1.09000 * 109.46528 * 209.99359 * 3 2 1 32 32 H 1.08998 * 109.47296 * 329.99790 * 3 2 1 33 33 H 1.09001 * 109.47081 * 185.00151 * 4 3 2 34 34 H 1.09010 * 109.47321 * 304.99838 * 4 3 2 35 35 H 1.09000 * 109.47614 * 300.00379 * 6 5 4 36 36 H 1.09007 * 109.47260 * 60.00680 * 6 5 4 37 37 H 1.09007 * 109.46914 * 185.00165 * 7 6 5 38 38 H 1.08995 * 109.47553 * 305.00153 * 7 6 5 39 39 H 0.96997 * 119.99986 * 359.97438 * 8 7 6 40 40 H 0.96995 * 120.00113 * 179.97438 * 12 11 9 41 41 H 1.07992 * 126.49521 * 0.02562 * 20 19 17 42 42 H 0.96991 * 120.00018 * 0.02562 * 23 22 21 43 43 H 0.97002 * 119.99779 * 179.97438 * 23 22 21 44 44 H 1.08005 * 125.80420 * 179.78478 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 8 3.3208 0.7725 2.0816 6 6 3.6247 1.0940 3.4403 7 6 4.5566 0.0282 4.0204 8 7 5.8408 0.0669 3.3166 9 6 6.8398 -0.8019 3.6663 10 1 6.6808 -1.5160 4.4607 11 6 8.0565 -0.7655 2.9990 12 7 8.2501 0.1044 2.0304 13 14 9.4190 -1.9512 3.4756 14 1 8.9485 -3.3471 3.2880 15 1 10.6077 -1.7095 2.6189 16 1 9.7842 -1.7391 4.8994 17 6 2.1389 -1.1673 0.0005 18 8 3.3503 -1.1703 0.1146 19 6 1.4113 -2.4349 -0.1367 20 6 1.9472 -3.6817 -0.0035 21 6 0.8990 -4.6064 -0.2108 22 6 1.0048 -6.0757 -0.1623 23 7 -0.0840 -6.8376 -0.3873 24 8 2.0746 -6.6006 0.0808 25 6 -0.2427 -3.8734 -0.4738 26 7 0.0713 -2.5688 -0.4279 27 1 -0.5474 -1.8365 -0.5759 28 1 -0.3633 -0.1037 -1.0225 29 1 -0.3633 -0.8335 0.6010 30 1 -0.3633 0.9373 0.4213 31 1 3.1500 1.1383 -0.5138 32 1 1.6085 2.0284 -0.5138 33 1 2.9180 2.6960 1.4438 34 1 1.5060 1.7549 1.9816 35 1 4.1148 2.0667 3.4827 36 1 2.7027 1.1260 4.0210 37 1 4.7172 0.2242 5.0806 38 1 4.1043 -0.9559 3.8973 39 1 5.9835 0.7080 2.6028 40 1 9.1004 0.1301 1.5644 41 1 2.9769 -3.9176 0.2209 42 1 -0.9371 -6.4190 -0.5815 43 1 -0.0142 -7.8046 -0.3558 44 1 -1.2215 -4.2807 -0.6804 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755877642.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:43 Heat of formation + Delta-G solvation = -30.683170 kcal Electronic energy + Delta-G solvation = -27633.210463 eV Core-core repulsion = 23588.226436 eV Total energy + Delta-G solvation = -4044.984027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.86434 -39.47740 -38.72232 -37.46438 -35.72866 -34.21052 -33.80391 -31.82374 -31.24218 -30.35861 -29.06768 -27.49089 -26.91726 -24.02983 -23.33245 -23.20886 -21.42633 -20.96397 -20.36515 -19.76274 -18.23653 -17.01790 -16.95666 -16.73306 -16.41965 -16.22533 -15.93116 -15.55503 -15.09813 -14.87137 -14.28936 -14.08421 -13.98023 -13.69230 -13.64338 -13.38459 -13.12069 -13.02072 -12.79428 -12.68327 -12.49978 -12.35322 -11.77878 -11.50902 -11.27392 -10.73708 -10.59932 -10.34677 -10.17611 -9.85406 -9.83006 -9.82468 -9.49460 -9.26409 -9.08954 -8.76419 -8.63873 -8.50807 -6.64810 -5.50963 -2.77902 1.30355 1.77940 2.68466 2.87508 3.31460 3.48355 3.57857 3.61626 3.65738 3.67822 4.08590 4.42285 4.49725 4.54530 4.74112 4.78899 4.81645 5.02573 5.07911 5.20025 5.23359 5.35408 5.51403 5.62308 5.65131 5.81125 5.84139 5.91558 5.95496 6.10694 6.24439 6.41835 6.55433 6.61207 6.66647 6.77099 6.95433 6.96103 7.23040 7.32387 7.76807 7.91490 8.24048 8.32813 8.67554 9.78923 10.38666 10.74702 11.72165 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.009365 B = 0.003782 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.008866 B = 7402.550445 C = 9696.793265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.621 5.621 3 C 0.122 3.878 4 C 0.042 3.958 5 O -0.350 6.350 6 C 0.058 3.942 7 C 0.157 3.843 8 N -0.722 5.722 9 C -0.235 4.235 10 H 0.067 0.933 11 C -0.014 4.014 12 N -0.932 5.932 13 Si 0.905 3.095 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.288 1.288 17 C 0.578 3.422 18 O -0.464 6.464 19 C -0.047 4.047 20 C -0.044 4.044 21 C -0.235 4.235 22 C 0.592 3.408 23 N -0.858 5.858 24 O -0.539 6.539 25 C 0.057 3.943 26 N -0.532 5.532 27 H 0.422 0.578 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.046 0.954 36 H 0.037 0.963 37 H 0.028 0.972 38 H 0.024 0.976 39 H 0.387 0.613 40 H 0.253 0.747 41 H 0.161 0.839 42 H 0.396 0.604 43 H 0.402 0.598 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.097 -1.096 -8.244 31.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.358 5.358 3 C 0.000 4.000 4 C -0.037 4.037 5 O -0.268 6.268 6 C -0.019 4.019 7 C 0.029 3.971 8 N -0.367 5.367 9 C -0.366 4.366 10 H 0.085 0.915 11 C -0.209 4.209 12 N -0.581 5.581 13 Si 0.736 3.264 14 H -0.212 1.212 15 H -0.218 1.218 16 H -0.215 1.215 17 C 0.364 3.636 18 O -0.333 6.333 19 C -0.158 4.158 20 C -0.070 4.070 21 C -0.246 4.246 22 C 0.378 3.622 23 N -0.422 5.422 24 O -0.415 6.415 25 C -0.085 4.085 26 N -0.135 5.135 27 H 0.268 0.732 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.042 0.958 39 H 0.221 0.779 40 H 0.063 0.937 41 H 0.179 0.821 42 H 0.224 0.776 43 H 0.233 0.767 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -28.490 -1.357 -8.041 29.634 hybrid contribution -0.381 -0.045 0.022 0.384 sum -28.871 -1.402 -8.020 29.997 Atomic orbital electron populations 1.22031 0.81462 1.03885 1.00671 1.47596 1.05603 1.06328 1.76275 1.21539 0.98392 0.84070 0.96011 1.22843 0.93577 0.93383 0.93897 1.88271 1.66221 1.47277 1.25030 1.22774 0.97129 0.99249 0.82789 1.20629 0.86882 0.95414 0.94156 1.42214 1.09327 1.42985 1.42166 1.19176 0.92067 1.11254 1.14104 0.91486 1.24694 0.98037 0.99536 0.98680 1.69671 1.24446 1.38260 1.25719 0.86296 0.81808 0.81042 0.77253 1.21233 1.21788 1.21502 1.17075 0.87097 0.81508 0.77876 1.91092 1.12051 1.85243 1.44943 1.20277 0.83203 0.95824 1.16519 1.21216 0.99915 0.88795 0.97026 1.19599 0.94483 0.92820 1.17677 1.17451 0.83542 0.85865 0.75315 1.43674 1.11741 1.10536 1.76216 1.90868 1.27881 1.74403 1.48366 1.22364 0.99275 0.83454 1.03384 1.42825 1.09610 1.07990 1.53029 0.73235 0.92700 0.91242 0.89815 0.88405 0.89361 0.92769 0.94345 0.93622 0.94478 0.95426 0.95839 0.77912 0.93740 0.82094 0.77633 0.76701 0.80528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 8.79 59.85 0.53 0.90 16 2 N -0.62 -7.24 2.86 -183.08 -0.52 -7.76 16 3 C 0.12 1.45 5.82 -4.04 -0.02 1.42 16 4 C 0.04 0.56 6.28 37.16 0.23 0.79 16 5 O -0.35 -6.83 8.82 -49.15 -0.43 -7.26 16 6 C 0.06 1.08 6.07 37.16 0.23 1.30 16 7 C 0.16 3.64 6.65 -4.04 -0.03 3.62 16 8 N -0.72 -20.80 5.55 -59.91 -0.33 -21.14 16 9 C -0.23 -7.31 9.99 -15.06 -0.15 -7.47 16 10 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 11 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 12 N -0.93 -30.79 13.06 55.49 0.72 -30.06 16 13 Si 0.90 24.50 29.55 -169.99 -5.02 19.48 16 14 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 15 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 16 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 17 C 0.58 9.28 7.33 -12.80 -0.09 9.19 16 18 O -0.46 -10.34 15.40 -8.71 -0.13 -10.48 16 19 C -0.05 -0.63 6.57 -82.41 -0.54 -1.18 16 20 C -0.04 -0.68 10.38 -39.09 -0.41 -1.09 16 21 C -0.24 -2.77 6.13 -105.02 -0.64 -3.41 16 22 C 0.59 7.39 8.09 -12.53 -0.10 7.29 16 23 N -0.86 -5.79 8.86 30.43 0.27 -5.52 16 24 O -0.54 -9.64 17.76 5.27 0.09 -9.55 16 25 C 0.06 0.39 11.43 -16.50 -0.19 0.20 16 26 N -0.53 -4.10 4.98 -9.30 -0.05 -4.14 16 27 H 0.42 1.77 4.87 -40.82 -0.20 1.58 16 28 H 0.05 0.18 7.42 -51.93 -0.39 -0.20 16 29 H 0.07 0.38 5.69 -51.93 -0.30 0.08 16 30 H 0.08 0.34 8.03 -51.93 -0.42 -0.08 16 31 H 0.10 1.47 7.51 -51.93 -0.39 1.08 16 32 H 0.09 0.66 8.07 -51.93 -0.42 0.24 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.04 0.43 8.14 -51.92 -0.42 0.01 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.39 11.79 7.67 -40.82 -0.31 11.48 16 40 H 0.25 8.04 8.31 -40.82 -0.34 7.71 16 41 H 0.16 2.95 8.06 -52.49 -0.42 2.52 16 42 H 0.40 1.13 7.74 -40.82 -0.32 0.81 16 43 H 0.40 2.33 8.93 -40.82 -0.36 1.97 16 44 H 0.18 0.28 7.44 -52.48 -0.39 -0.11 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -44.77 373.59 -7.06 -51.83 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.99 Total: 7.93 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: -1.29 Total: 11.04 kcal Atomic # 7 Polarization: -68.72 SS G_CDS: 0.09 Total: -68.62 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.47 Total: -27.28 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.02 Total: 19.48 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -44.77 -7.06 -51.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755877642.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.146 kcal (2) G-P(sol) polarization free energy of solvation -44.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds