Wall clock time and date at job start Fri Apr 10 2020 18:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47332 * 2 1 4 4 N 1.46501 * 109.47008 * 120.00605 * 2 1 3 5 5 C 1.34780 * 119.99941 * 274.99949 * 4 2 1 6 6 O 1.21281 * 119.99732 * 359.97438 * 5 4 2 7 7 C 1.50694 * 120.00246 * 180.02562 * 5 4 2 8 8 H 1.09007 * 110.37481 * 305.92026 * 7 5 4 9 9 O 1.43922 * 110.42569 * 183.54341 * 7 5 4 10 10 C 1.43764 * 109.64442 * 215.17195 * 9 7 5 11 11 C 1.53674 * 106.82451 * 1.33964 * 10 9 7 12 12 H 1.08991 * 109.73970 * 267.27635 * 11 10 9 13 13 C 1.51251 * 112.32570 * 144.99987 * 11 10 9 14 14 O 1.42696 * 111.49481 * 295.00097 * 13 11 10 15 15 C 1.43201 * 112.75874 * 299.56714 * 14 13 11 16 16 C 1.52756 * 108.43720 * 64.91002 * 15 14 13 17 17 C 1.53100 * 110.45384 * 300.07811 * 16 15 14 18 18 H 1.08998 * 113.39669 * 283.64855 * 17 16 15 19 19 C 1.53004 * 109.47124 * 240.00236 * 2 1 3 20 20 C 1.53950 * 113.74237 * 326.26275 * 19 2 1 21 21 N 1.47805 * 86.03824 * 90.88049 * 20 19 2 22 22 C 1.36942 * 134.45487 * 204.64668 * 21 20 19 23 23 H 1.08002 * 119.99602 * 179.86453 * 22 21 20 24 24 C 1.38807 * 120.00184 * 359.86555 * 22 21 20 25 25 N 1.31617 * 119.99858 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00250 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47116 * 59.99643 * 26 24 22 28 28 H 1.48494 * 109.47098 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.46650 * 300.00031 * 26 24 22 30 30 C 1.47582 * 91.05413 * 24.54887 * 21 20 19 31 31 H 1.09001 * 109.46769 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47126 * 299.99217 * 1 2 3 33 33 H 1.08997 * 109.47103 * 59.99610 * 1 2 3 34 34 H 0.97001 * 120.00239 * 95.00257 * 4 2 1 35 35 H 1.09006 * 109.99055 * 120.68487 * 10 9 7 36 36 H 1.09007 * 109.99009 * 241.99735 * 10 9 7 37 37 H 1.08994 * 109.07429 * 55.52598 * 13 11 10 38 38 H 1.09008 * 109.06735 * 174.48272 * 13 11 10 39 39 H 1.08994 * 109.64399 * 305.22277 * 15 14 13 40 40 H 1.09002 * 109.64099 * 184.58987 * 15 14 13 41 41 H 1.08994 * 109.30882 * 179.77204 * 16 15 14 42 42 H 1.09008 * 109.30935 * 60.37396 * 16 15 14 43 43 H 1.09002 * 112.94408 * 194.66692 * 19 2 1 44 44 H 1.08999 * 113.76704 * 205.14826 * 20 19 2 45 45 H 1.09002 * 113.76463 * 336.53620 * 20 19 2 46 46 H 0.97002 * 120.00155 * 180.02562 * 25 24 22 47 47 H 1.08999 * 113.77186 * 221.15323 * 30 21 20 48 48 H 1.09004 * 113.76624 * 89.74800 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0185 2.3572 6 8 1.8591 1.1584 2.4116 7 6 2.6499 -0.7288 3.5874 8 1 2.0488 -1.6163 3.7856 9 8 2.6283 0.1560 4.7223 10 6 3.7483 -0.1278 5.5778 11 6 4.5463 -1.2563 4.9061 12 1 4.2093 -2.2212 5.2847 13 6 6.0362 -1.1156 5.1251 14 8 6.5487 0.0579 4.4954 15 6 6.3477 0.0585 3.0776 16 6 4.8458 0.1051 2.8026 17 6 4.1511 -1.1123 3.4186 18 1 4.2983 -2.0293 2.8480 19 6 2.0400 -0.7212 -1.2493 20 6 1.1418 -1.8865 -1.7024 21 7 0.4435 -0.8880 -2.5390 22 6 -0.8147 -0.7945 -3.0716 23 1 -1.0874 0.0661 -3.6645 24 6 -1.7394 -1.8055 -2.8494 25 7 -1.4071 -2.8539 -2.1263 26 14 -3.4554 -1.6783 -3.5764 27 1 -3.3612 -1.5972 -5.0562 28 1 -4.2442 -2.8776 -3.1961 29 1 -4.1245 -0.4593 -3.0554 30 6 1.6450 -0.0315 -2.5678 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.2491 -1.6319 1.1525 35 1 4.3727 0.7598 5.6809 36 1 3.3965 -0.4521 6.5572 37 1 6.2354 -1.0615 6.1954 38 1 6.5408 -1.9899 4.7138 39 1 6.7711 -0.8489 2.6471 40 1 6.8276 0.9339 2.6399 41 1 4.6766 0.1102 1.7259 42 1 4.4284 1.0148 3.2344 43 1 3.0972 -0.9798 -1.1889 44 1 1.6680 -2.6494 -2.2761 45 1 0.5254 -2.3017 -0.9051 46 1 -2.0531 -3.5607 -1.9713 47 1 1.4295 1.0315 -2.4601 48 1 2.3194 -0.2485 -3.3962 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970205108.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:36 Heat of formation + Delta-G solvation = -62.207006 kcal Electronic energy + Delta-G solvation = -29330.314837 eV Core-core repulsion = 25387.504178 eV Total energy + Delta-G solvation = -3942.810659 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.30505 -39.47233 -38.32118 -37.46510 -34.40830 -33.33337 -32.26565 -32.08966 -30.16713 -28.47529 -27.56189 -25.79547 -24.92680 -24.41474 -23.78708 -23.17119 -21.30508 -19.98920 -19.85251 -18.51692 -17.29149 -16.97107 -16.77005 -16.49062 -16.14896 -15.72886 -15.58805 -15.27468 -14.89944 -14.72071 -14.23286 -13.88732 -13.75980 -13.61674 -13.26292 -12.84211 -12.61748 -12.56451 -12.52438 -12.24101 -11.94131 -11.67147 -11.32827 -11.18456 -11.08160 -10.97787 -10.94857 -10.75144 -10.60065 -10.57134 -10.35668 -10.11261 -9.86609 -9.77207 -9.62281 -9.42531 -9.25584 -8.73866 -8.65877 -6.83292 -5.77194 -3.08044 2.74920 3.06813 3.39868 3.44761 3.44929 3.55186 3.78937 3.87009 4.27565 4.44902 4.46962 4.61494 4.65549 4.87154 4.91497 4.96216 5.06637 5.17391 5.19841 5.22288 5.26639 5.31090 5.32575 5.39096 5.48473 5.51707 5.57719 5.69357 5.76610 5.91522 6.04161 6.09903 6.27700 6.41374 6.48552 6.62773 6.64760 6.72790 6.77061 6.78961 7.03333 7.23746 7.27030 7.47090 7.60572 7.80369 7.97936 8.47727 9.04927 9.71390 10.60270 11.39636 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.024957 B = 0.002940 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.680842 B = 9522.273715 C = 9902.748695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.175 3.825 3 H 0.076 0.924 4 N -0.716 5.716 5 C 0.516 3.484 6 O -0.525 6.525 7 C 0.063 3.937 8 H 0.095 0.905 9 O -0.350 6.350 10 C 0.057 3.943 11 C -0.156 4.156 12 H 0.095 0.905 13 C 0.072 3.928 14 O -0.376 6.376 15 C 0.062 3.938 16 C -0.158 4.158 17 C -0.105 4.105 18 H 0.109 0.891 19 C -0.153 4.153 20 C 0.164 3.836 21 N -0.605 5.605 22 C -0.219 4.219 23 H 0.077 0.923 24 C -0.004 4.004 25 N -0.920 5.920 26 Si 0.907 3.093 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.284 1.284 30 C 0.126 3.874 31 H 0.075 0.925 32 H 0.029 0.971 33 H 0.084 0.916 34 H 0.397 0.603 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.023 0.977 45 H 0.079 0.921 46 H 0.253 0.747 47 H 0.045 0.955 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.661 -0.240 14.048 21.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.072 3.928 3 H 0.094 0.906 4 N -0.368 5.368 5 C 0.300 3.700 6 O -0.400 6.400 7 C 0.002 3.998 8 H 0.112 0.888 9 O -0.268 6.268 10 C -0.019 4.019 11 C -0.175 4.175 12 H 0.113 0.887 13 C -0.005 4.005 14 O -0.294 6.294 15 C -0.015 4.015 16 C -0.196 4.196 17 C -0.124 4.124 18 H 0.127 0.873 19 C -0.173 4.173 20 C 0.038 3.962 21 N -0.332 5.332 22 C -0.347 4.347 23 H 0.095 0.905 24 C -0.201 4.201 25 N -0.568 5.568 26 Si 0.737 3.263 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.211 1.211 30 C 0.000 4.000 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.103 0.897 34 H 0.230 0.770 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.097 0.903 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 16.032 0.850 14.172 21.415 hybrid contribution -0.936 -1.090 -0.771 1.631 sum 15.096 -0.240 13.401 20.188 Atomic orbital electron populations 1.22149 0.93188 1.04145 1.01171 1.20625 0.95590 0.95222 0.81375 0.90629 1.46094 1.67054 1.13949 1.09726 1.20120 0.78240 0.87540 0.84074 1.90714 1.49043 1.15760 1.84476 1.23146 0.96543 0.93121 0.86976 0.88758 1.88707 1.46546 1.58149 1.33440 1.23137 0.87460 0.97850 0.93495 1.22752 0.97922 1.00967 0.95838 0.88701 1.21938 0.91097 0.88654 0.98830 1.88112 1.79675 1.41260 1.20349 1.22596 0.94978 1.02348 0.81579 1.22231 0.96381 0.98746 1.02214 1.22906 0.93532 0.99838 0.96153 0.87303 1.23504 0.98266 1.00869 0.94666 1.22397 0.89905 0.90181 0.93668 1.46029 1.06672 1.20124 1.60351 1.18922 0.85680 1.03820 1.26260 0.90496 1.24690 0.98123 0.96589 1.00682 1.69777 1.34320 1.09797 1.42889 0.86281 0.84367 0.76920 0.78695 1.21366 1.21665 1.21103 1.22527 0.89120 0.95507 0.92884 0.90641 0.95207 0.89678 0.76961 0.90285 0.90950 0.88554 0.92604 0.92738 0.88465 0.90097 0.89453 0.91798 0.95910 0.90272 0.93745 0.93692 0.94724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.21 37.16 0.30 -2.76 16 2 C 0.18 3.02 2.69 -67.93 -0.18 2.83 16 3 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 4 N -0.72 -10.27 5.08 -53.80 -0.27 -10.54 16 5 C 0.52 7.95 5.46 -10.99 -0.06 7.89 16 6 O -0.52 -10.45 16.19 -13.66 -0.22 -10.67 16 7 C 0.06 0.76 3.52 -26.36 -0.09 0.67 16 8 H 0.09 0.98 8.14 -51.92 -0.42 0.56 16 9 O -0.35 -4.91 10.21 -54.45 -0.56 -5.47 16 10 C 0.06 0.56 6.78 37.51 0.25 0.82 16 11 C -0.16 -1.18 2.98 -90.32 -0.27 -1.45 16 12 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 13 C 0.07 0.50 6.12 36.28 0.22 0.72 16 14 O -0.38 -3.58 10.46 -35.23 -0.37 -3.95 16 15 C 0.06 0.52 6.82 37.03 0.25 0.77 16 16 C -0.16 -1.60 4.12 -26.80 -0.11 -1.71 16 17 C -0.11 -0.93 3.63 -88.20 -0.32 -1.25 16 18 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 19 C -0.15 -2.62 4.07 -89.69 -0.36 -2.99 16 20 C 0.16 3.51 6.53 -2.84 -0.02 3.49 16 21 N -0.60 -14.41 2.18 -177.69 -0.39 -14.80 16 22 C -0.22 -5.86 9.81 -15.06 -0.15 -6.01 16 23 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 24 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 25 N -0.92 -25.90 11.39 55.49 0.63 -25.27 16 26 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 30 C 0.13 2.44 8.14 -2.96 -0.02 2.42 16 31 H 0.07 1.73 6.18 -51.93 -0.32 1.41 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.95 6.15 -51.93 -0.32 1.63 16 34 H 0.40 4.71 8.60 -40.82 -0.35 4.36 16 35 H 0.08 0.83 7.62 -51.93 -0.40 0.44 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.31 8.13 -51.92 -0.42 -0.11 16 39 H 0.05 0.38 8.12 -51.93 -0.42 -0.04 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.85 7.77 -51.93 -0.40 0.45 16 42 H 0.09 1.16 6.93 -51.92 -0.36 0.80 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 1.85 5.49 -51.93 -0.29 1.56 16 46 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 47 H 0.04 0.85 8.10 -51.93 -0.42 0.43 16 48 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 368.98 15.07 5.56 5.56 Total: -1.00 -32.69 368.98 -9.16 -41.85 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.87 Total: 3.27 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -0.65 Total: 3.23 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.03 Total: -50.61 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -1.15 Total: -20.09 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.69 -9.16 -41.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970205108.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.356 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds