Wall clock time and date at job start Fri Apr 10 2020 18:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47332 * 2 1 4 4 N 1.46501 * 109.47008 * 120.00605 * 2 1 3 5 5 C 1.34780 * 119.99941 * 274.99949 * 4 2 1 6 6 O 1.21281 * 119.99732 * 359.97438 * 5 4 2 7 7 C 1.50694 * 120.00246 * 180.02562 * 5 4 2 8 8 H 1.09007 * 110.37481 * 305.92026 * 7 5 4 9 9 O 1.43922 * 110.42569 * 183.54341 * 7 5 4 10 10 C 1.43764 * 109.64442 * 215.17195 * 9 7 5 11 11 C 1.53674 * 106.82451 * 1.33964 * 10 9 7 12 12 H 1.08991 * 109.73970 * 267.27635 * 11 10 9 13 13 C 1.51251 * 112.32570 * 144.99987 * 11 10 9 14 14 O 1.42696 * 111.49481 * 295.00097 * 13 11 10 15 15 C 1.43201 * 112.75874 * 299.56714 * 14 13 11 16 16 C 1.52756 * 108.43720 * 64.91002 * 15 14 13 17 17 C 1.53100 * 110.45384 * 300.07811 * 16 15 14 18 18 H 1.08998 * 113.39669 * 283.64855 * 17 16 15 19 19 C 1.53004 * 109.47124 * 240.00236 * 2 1 3 20 20 C 1.53950 * 113.74237 * 326.26275 * 19 2 1 21 21 N 1.47805 * 86.03824 * 90.88049 * 20 19 2 22 22 C 1.36942 * 134.45487 * 204.64668 * 21 20 19 23 23 H 1.08002 * 119.99602 * 179.86453 * 22 21 20 24 24 C 1.38807 * 120.00184 * 359.86555 * 22 21 20 25 25 N 1.31617 * 119.99858 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00250 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47116 * 59.99643 * 26 24 22 28 28 H 1.48494 * 109.47098 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.46650 * 300.00031 * 26 24 22 30 30 C 1.47582 * 91.05413 * 24.54887 * 21 20 19 31 31 H 1.09001 * 109.46769 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47126 * 299.99217 * 1 2 3 33 33 H 1.08997 * 109.47103 * 59.99610 * 1 2 3 34 34 H 0.97001 * 120.00239 * 95.00257 * 4 2 1 35 35 H 1.09006 * 109.99055 * 120.68487 * 10 9 7 36 36 H 1.09007 * 109.99009 * 241.99735 * 10 9 7 37 37 H 1.08994 * 109.07429 * 55.52598 * 13 11 10 38 38 H 1.09008 * 109.06735 * 174.48272 * 13 11 10 39 39 H 1.08994 * 109.64399 * 305.22277 * 15 14 13 40 40 H 1.09002 * 109.64099 * 184.58987 * 15 14 13 41 41 H 1.08994 * 109.30882 * 179.77204 * 16 15 14 42 42 H 1.09008 * 109.30935 * 60.37396 * 16 15 14 43 43 H 1.09002 * 112.94408 * 194.66692 * 19 2 1 44 44 H 1.08999 * 113.76704 * 205.14826 * 20 19 2 45 45 H 1.09002 * 113.76463 * 336.53620 * 20 19 2 46 46 H 0.97002 * 120.00155 * 180.02562 * 25 24 22 47 47 H 1.08999 * 113.77186 * 221.15323 * 30 21 20 48 48 H 1.09004 * 113.76624 * 89.74800 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0185 2.3572 6 8 1.8591 1.1584 2.4116 7 6 2.6499 -0.7288 3.5874 8 1 2.0488 -1.6163 3.7856 9 8 2.6283 0.1560 4.7223 10 6 3.7483 -0.1278 5.5778 11 6 4.5463 -1.2563 4.9061 12 1 4.2093 -2.2212 5.2847 13 6 6.0362 -1.1156 5.1251 14 8 6.5487 0.0579 4.4954 15 6 6.3477 0.0585 3.0776 16 6 4.8458 0.1051 2.8026 17 6 4.1511 -1.1123 3.4186 18 1 4.2983 -2.0293 2.8480 19 6 2.0400 -0.7212 -1.2493 20 6 1.1418 -1.8865 -1.7024 21 7 0.4435 -0.8880 -2.5390 22 6 -0.8147 -0.7945 -3.0716 23 1 -1.0874 0.0661 -3.6645 24 6 -1.7394 -1.8055 -2.8494 25 7 -1.4071 -2.8539 -2.1263 26 14 -3.4554 -1.6783 -3.5764 27 1 -3.3612 -1.5972 -5.0562 28 1 -4.2442 -2.8776 -3.1961 29 1 -4.1245 -0.4593 -3.0554 30 6 1.6450 -0.0315 -2.5678 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.2491 -1.6319 1.1525 35 1 4.3727 0.7598 5.6809 36 1 3.3965 -0.4521 6.5572 37 1 6.2354 -1.0615 6.1954 38 1 6.5408 -1.9899 4.7138 39 1 6.7711 -0.8489 2.6471 40 1 6.8276 0.9339 2.6399 41 1 4.6766 0.1102 1.7259 42 1 4.4284 1.0148 3.2344 43 1 3.0972 -0.9798 -1.1889 44 1 1.6680 -2.6494 -2.2761 45 1 0.5254 -2.3017 -0.9051 46 1 -2.0531 -3.5607 -1.9713 47 1 1.4295 1.0315 -2.4601 48 1 2.3194 -0.2485 -3.3962 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970205108.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:35 Heat of formation + Delta-G solvation = -84.301656 kcal Electronic energy + Delta-G solvation = -29331.272933 eV Core-core repulsion = 25387.504178 eV Total energy + Delta-G solvation = -3943.768755 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.16376 -40.80814 -39.62333 -38.38239 -35.85824 -34.28480 -33.96078 -32.89686 -31.50761 -29.64212 -29.30845 -26.58975 -26.44904 -25.95190 -24.73713 -24.15620 -22.85378 -21.16748 -20.59426 -19.98806 -18.69182 -18.25369 -17.78991 -17.28949 -17.12674 -16.85067 -16.80865 -16.40542 -16.17140 -16.04108 -15.68699 -15.29228 -15.11364 -14.47570 -14.42486 -14.09166 -13.87177 -13.58605 -13.47643 -13.32053 -13.14044 -12.94879 -12.88968 -12.78978 -12.60508 -12.53052 -12.41387 -12.09689 -12.01340 -11.69295 -11.64748 -11.36764 -11.20436 -11.10073 -10.93060 -10.74950 -10.51296 -10.40415 -10.03489 -8.75296 -7.83131 -5.12007 1.46750 1.47831 1.53036 1.57708 1.94647 2.51458 2.90319 3.00046 3.18797 3.37708 3.46830 3.57311 3.65805 3.78703 3.89728 3.97228 3.99820 4.05505 4.23015 4.30522 4.39264 4.40447 4.52545 4.55838 4.64164 4.68139 4.70987 4.73434 4.80176 4.86824 4.87348 4.90095 5.01725 5.04840 5.11027 5.12326 5.15083 5.28278 5.32576 5.52766 5.60272 5.69117 5.78367 5.84781 6.04086 6.23297 6.62577 7.01992 7.28756 7.69956 8.65970 9.32739 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.024957 B = 0.002940 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.680842 B = 9522.273715 C = 9902.748695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.186 3.814 3 H 0.071 0.929 4 N -0.703 5.703 5 C 0.515 3.485 6 O -0.577 6.577 7 C 0.062 3.938 8 H 0.117 0.883 9 O -0.389 6.389 10 C 0.050 3.950 11 C -0.145 4.145 12 H 0.124 0.876 13 C 0.067 3.933 14 O -0.398 6.398 15 C 0.064 3.936 16 C -0.155 4.155 17 C -0.097 4.097 18 H 0.143 0.857 19 C -0.119 4.119 20 C 0.163 3.837 21 N -0.632 5.632 22 C -0.222 4.222 23 H 0.074 0.926 24 C -0.056 4.056 25 N -0.943 5.943 26 Si 0.960 3.040 27 H -0.282 1.282 28 H -0.296 1.296 29 H -0.284 1.284 30 C 0.122 3.878 31 H 0.050 0.950 32 H 0.018 0.982 33 H 0.059 0.941 34 H 0.413 0.587 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.108 0.892 44 H 0.019 0.981 45 H 0.056 0.944 46 H 0.245 0.755 47 H 0.048 0.952 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.946 -1.744 14.597 23.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.081 3.919 3 H 0.089 0.911 4 N -0.355 5.355 5 C 0.302 3.698 6 O -0.455 6.455 7 C 0.001 3.999 8 H 0.135 0.865 9 O -0.308 6.308 10 C -0.026 4.026 11 C -0.164 4.164 12 H 0.142 0.858 13 C -0.009 4.009 14 O -0.317 6.317 15 C -0.012 4.012 16 C -0.193 4.193 17 C -0.115 4.115 18 H 0.161 0.839 19 C -0.139 4.139 20 C 0.038 3.962 21 N -0.359 5.359 22 C -0.351 4.351 23 H 0.091 0.909 24 C -0.250 4.250 25 N -0.592 5.592 26 Si 0.790 3.210 27 H -0.209 1.209 28 H -0.222 1.222 29 H -0.211 1.211 30 C -0.003 4.003 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.250 0.750 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.128 0.872 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.126 0.874 44 H 0.037 0.963 45 H 0.074 0.926 46 H 0.054 0.946 47 H 0.066 0.934 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 18.358 -0.668 14.719 23.540 hybrid contribution -1.638 -0.526 -0.915 1.948 sum 16.720 -1.194 13.804 21.715 Atomic orbital electron populations 1.21915 0.95936 1.01781 0.99289 1.20304 0.93104 0.95569 0.82881 0.91053 1.45861 1.66345 1.14590 1.08721 1.20838 0.76956 0.86993 0.85036 1.90689 1.51312 1.18230 1.85310 1.23269 0.99098 0.92655 0.84833 0.86542 1.88670 1.48252 1.59426 1.34422 1.23308 0.86838 0.98424 0.94004 1.22773 0.98148 1.01122 0.94339 0.85802 1.22161 0.90491 0.88560 0.99734 1.88093 1.79923 1.42881 1.20833 1.22620 0.93597 1.03527 0.81497 1.22148 0.97746 0.97780 1.01577 1.23033 0.90531 1.00330 0.97606 0.83887 1.23201 0.99725 0.97751 0.93214 1.22344 0.90145 0.90938 0.92760 1.46330 1.07103 1.21875 1.60569 1.19177 0.87387 1.03333 1.25225 0.90867 1.25303 1.00993 0.96853 1.01816 1.69920 1.34752 1.10224 1.44306 0.85425 0.81025 0.76390 0.78134 1.20875 1.22191 1.21073 1.22748 0.87621 0.95346 0.94586 0.93052 0.96306 0.92251 0.75019 0.91956 0.89191 0.87187 0.90297 0.90322 0.88634 0.90604 0.93488 0.87407 0.96297 0.92560 0.94568 0.93378 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.53 8.21 71.98 0.59 -4.94 16 2 C 0.19 6.25 2.69 44.99 0.12 6.38 16 3 H 0.07 2.55 7.58 -2.39 -0.02 2.53 16 4 N -0.70 -19.11 5.08 -442.52 -2.25 -21.36 16 5 C 0.52 15.60 5.46 87.65 0.48 16.08 16 6 O -0.58 -23.56 16.19 15.34 0.25 -23.31 16 7 C 0.06 1.39 3.52 30.84 0.11 1.50 16 8 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 9 O -0.39 -10.79 10.21 -130.60 -1.33 -12.12 16 10 C 0.05 0.93 6.78 72.21 0.49 1.42 16 11 C -0.15 -1.69 2.98 -10.60 -0.03 -1.72 16 12 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 13 C 0.07 0.69 6.12 71.41 0.44 1.12 16 14 O -0.40 -6.75 10.46 -148.98 -1.56 -8.31 16 15 C 0.06 0.94 6.82 71.90 0.49 1.43 16 16 C -0.15 -2.90 4.12 30.55 0.13 -2.78 16 17 C -0.10 -1.40 3.63 -9.23 -0.03 -1.43 16 18 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 19 C -0.12 -3.82 4.07 -10.13 -0.04 -3.86 16 20 C 0.16 6.85 6.53 86.44 0.56 7.41 16 21 N -0.63 -29.94 2.18 -716.10 -1.56 -31.51 16 22 C -0.22 -12.00 9.81 84.03 0.82 -11.18 16 23 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16 24 C -0.06 -3.09 5.50 84.86 0.47 -2.62 16 25 N -0.94 -53.93 11.39 21.65 0.25 -53.69 16 26 Si 0.96 45.49 29.55 68.60 2.03 47.52 16 27 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 28 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 29 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 30 C 0.12 4.52 8.14 86.49 0.70 5.23 16 31 H 0.05 2.41 6.18 -2.39 -0.01 2.40 16 32 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 2.79 6.15 -2.39 -0.01 2.77 16 34 H 0.41 8.68 8.60 -92.71 -0.80 7.88 16 35 H 0.06 1.32 7.62 -2.38 -0.02 1.31 16 36 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.08 0.49 8.13 -2.38 -0.02 0.47 16 39 H 0.08 0.79 8.12 -2.39 -0.02 0.77 16 40 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 1.46 7.77 -2.39 -0.02 1.44 16 42 H 0.05 1.27 6.93 -2.38 -0.02 1.26 16 43 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 44 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.06 2.64 5.49 -2.39 -0.01 2.63 16 46 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 47 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 48 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -74.72 368.98 1.28 -73.44 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.16 Total: 17.32 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 5.30 Total: 12.02 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -3.56 Total: -106.55 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -2.64 Total: -43.74 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -74.72 1.28 -73.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970205108.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.866 kcal (2) G-P(sol) polarization free energy of solvation -74.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds