Wall clock time and date at job start Fri Apr 10 2020 18:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42909 * 113.99666 * 2 1 4 4 C 1.53786 * 113.61177 * 150.00201 * 3 2 1 5 5 C 1.53776 * 87.08039 * 89.11075 * 4 3 2 6 6 C 1.50709 * 113.61390 * 139.97892 * 5 4 3 7 7 O 1.21284 * 119.99343 * 1.52713 * 6 5 4 8 8 N 1.34775 * 120.00175 * 181.52794 * 6 5 4 9 9 C 1.47485 * 125.66339 * 359.97438 * 8 6 5 10 10 C 1.55022 * 104.89927 * 156.00099 * 9 8 6 11 11 C 1.54526 * 101.52014 * 36.37721 * 10 9 8 12 12 C 1.47183 * 125.66335 * 179.97438 * 8 6 5 13 13 C 1.52520 * 110.04593 * 206.89562 * 11 10 9 14 14 N 1.47301 * 108.39885 * 287.92345 * 13 11 10 15 15 C 1.36942 * 121.06629 * 130.60794 * 14 13 11 16 16 H 1.08001 * 119.99861 * 205.76184 * 15 14 13 17 17 C 1.38806 * 119.99590 * 25.76170 * 15 14 13 18 18 N 1.31615 * 120.00496 * 16.75307 * 17 15 14 19 19 Si 1.86801 * 119.99795 * 196.75503 * 17 15 14 20 20 H 1.48501 * 109.47253 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47232 * 119.99636 * 19 17 15 22 22 H 1.48505 * 109.47239 * 239.99884 * 19 17 15 23 23 C 1.47164 * 117.87352 * 310.62291 * 14 13 11 24 24 C 1.53279 * 108.55261 * 51.12347 * 23 14 13 25 25 O 1.42066 * 110.32342 * 83.93182 * 11 10 9 26 26 C 1.53781 * 87.17605 * 25.38857 * 5 4 3 27 27 H 1.08999 * 109.46943 * 300.00453 * 1 2 3 28 28 H 1.08998 * 109.47213 * 59.99818 * 1 2 3 29 29 H 1.08996 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09000 * 112.85055 * 18.80308 * 3 2 1 31 31 H 1.08999 * 113.61308 * 334.56380 * 4 3 2 32 32 H 1.08999 * 113.60766 * 203.66092 * 4 3 2 33 33 H 1.08997 * 113.61938 * 270.79466 * 5 4 3 34 34 H 1.08996 * 110.35845 * 37.14471 * 9 8 6 35 35 H 1.09009 * 110.35608 * 274.85848 * 9 8 6 36 36 H 1.08995 * 111.01710 * 278.31996 * 10 9 8 37 37 H 1.09000 * 111.01558 * 154.43212 * 10 9 8 38 38 H 1.09003 * 109.90854 * 62.11012 * 12 8 6 39 39 H 1.09004 * 109.91027 * 300.85186 * 12 8 6 40 40 H 1.09005 * 109.67873 * 47.64801 * 13 11 10 41 41 H 1.09003 * 109.67700 * 168.19262 * 13 11 10 42 42 H 0.96996 * 120.00178 * 180.02562 * 18 17 15 43 43 H 1.08991 * 109.62610 * 291.39972 * 23 14 13 44 44 H 1.09005 * 109.77672 * 170.93166 * 23 14 13 45 45 H 1.08994 * 109.51773 * 187.17590 * 24 23 14 46 46 H 1.08996 * 109.51717 * 67.01634 * 24 23 14 47 47 H 1.09002 * 113.61566 * 89.15693 * 26 5 4 48 48 H 1.09000 * 113.61607 * 220.05690 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.3756 1.3720 0.7045 5 6 4.0061 1.0331 -0.6565 6 6 5.2717 1.7996 -0.9432 7 8 5.7114 2.5737 -0.1195 8 7 5.9146 1.6249 -2.1147 9 6 5.4933 0.7196 -3.2001 10 6 6.1351 1.3089 -4.4823 11 6 7.4892 1.8211 -3.9423 12 6 7.1538 2.3058 -2.5233 13 6 7.9897 2.9790 -4.7996 14 7 8.4319 2.4396 -6.0970 15 6 8.0111 2.9975 -7.2747 16 1 7.9766 2.3997 -8.1735 17 6 7.6290 4.3314 -7.3132 18 7 7.9708 5.1425 -6.3346 19 14 6.6295 4.9754 -8.7539 20 1 6.3778 3.8713 -9.7146 21 1 5.3340 5.5069 -8.2595 22 1 7.3827 6.0600 -9.4334 23 6 9.3402 1.2817 -6.0872 24 6 8.7391 0.1981 -5.1850 25 8 8.4376 0.7640 -3.9058 26 6 2.7538 1.6474 -1.3040 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.3137 2.0790 0.3238 31 1 3.5170 0.5959 1.4566 32 1 3.6311 2.3672 1.0684 33 1 4.1098 -0.0371 -0.8353 34 1 4.4070 0.7132 -3.2884 35 1 5.8656 -0.2888 -3.0188 36 1 5.5363 2.1294 -4.8775 37 1 6.2823 0.5358 -5.2365 38 1 7.9630 2.0449 -1.8412 39 1 7.0008 3.3850 -2.5260 40 1 7.1832 3.6956 -4.9557 41 1 8.8260 3.4697 -4.3017 42 1 7.7034 6.0745 -6.3614 43 1 10.3131 1.5829 -5.6991 44 1 9.4540 0.8937 -7.0994 45 1 9.4560 -0.6139 -5.0640 46 1 7.8251 -0.1866 -5.6374 47 1 2.8391 2.7180 -1.4902 48 1 2.3941 1.0933 -2.1710 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972424216.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:00 Heat of formation + Delta-G solvation = -62.331157 kcal Electronic energy + Delta-G solvation = -29115.062171 eV Core-core repulsion = 25172.246128 eV Total energy + Delta-G solvation = -3942.816043 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.63488 -39.59142 -38.25306 -36.16730 -35.62107 -34.48205 -31.53513 -31.22974 -29.50549 -27.89386 -27.18395 -26.34432 -25.91466 -24.85070 -23.58757 -22.61959 -21.41312 -20.25173 -19.09475 -18.68931 -17.51199 -17.11161 -16.35833 -16.11030 -15.88581 -15.49344 -15.21845 -15.02046 -14.79936 -14.40538 -14.30112 -13.98241 -13.62337 -13.44013 -12.89281 -12.78147 -12.73614 -12.64288 -12.53999 -12.19297 -12.05789 -11.98771 -11.57570 -11.35533 -11.11814 -10.99048 -10.92582 -10.87193 -10.69923 -10.62139 -10.28890 -10.27571 -9.98084 -9.85328 -9.56865 -9.51132 -9.06109 -8.56968 -8.41683 -6.78701 -5.87948 -3.30778 2.76493 3.14611 3.30581 3.37127 3.38892 3.40558 4.19918 4.28549 4.38837 4.40621 4.55675 4.61795 4.90181 4.91009 5.02022 5.07622 5.15373 5.17035 5.27894 5.34413 5.36742 5.44573 5.54901 5.58053 5.61187 5.72795 5.77761 5.82294 5.84344 5.87969 5.96952 6.02709 6.06960 6.16065 6.29122 6.34436 6.49865 6.51583 6.61844 6.76609 6.92066 7.03526 7.41834 7.68045 7.72719 7.90338 8.28368 8.33951 9.06900 9.70154 10.27482 11.20361 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.003345 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.349505 B = 8369.223077 C = 9135.267366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.062 3.938 4 C -0.116 4.116 5 C -0.124 4.124 6 C 0.535 3.465 7 O -0.547 6.547 8 N -0.610 5.610 9 C 0.102 3.898 10 C -0.144 4.144 11 C 0.086 3.914 12 C 0.125 3.875 13 C 0.164 3.836 14 N -0.593 5.593 15 C -0.252 4.252 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.902 3.098 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.377 6.377 26 C -0.141 4.141 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.029 0.971 42 H 0.255 0.745 43 H 0.026 0.974 44 H 0.062 0.938 45 H 0.083 0.917 46 H 0.048 0.952 47 H 0.095 0.905 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.144 -10.585 9.657 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C 0.004 3.996 4 C -0.154 4.154 5 C -0.145 4.145 6 C 0.324 3.676 7 O -0.425 6.425 8 N -0.344 5.344 9 C -0.021 4.021 10 C -0.182 4.182 11 C 0.044 3.956 12 C 0.002 3.998 13 C 0.037 3.963 14 N -0.316 5.316 15 C -0.381 4.381 16 H 0.087 0.913 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.216 1.216 23 C -0.018 4.018 24 C -0.032 4.032 25 O -0.296 6.296 26 C -0.179 4.179 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.115 0.885 41 H 0.047 0.953 42 H 0.065 0.935 43 H 0.044 0.956 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.066 0.934 47 H 0.113 0.887 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.777 -10.212 10.318 18.694 hybrid contribution -0.660 0.611 -1.172 1.478 sum -12.437 -9.600 9.146 18.180 Atomic orbital electron populations 1.22818 0.80884 1.02795 1.00096 1.87886 1.19750 1.26574 1.94564 1.23125 0.94694 0.85183 0.96625 1.23110 0.92584 1.03968 0.95700 1.22641 0.91820 1.00961 0.99078 1.20140 0.84860 0.82564 0.80083 1.90676 1.67755 1.38047 1.45998 1.48593 1.26116 1.43222 1.16443 1.22409 0.99331 0.93494 0.86848 1.23185 0.97078 1.02055 0.95880 1.22643 0.88329 0.90533 0.94108 1.21781 0.86082 0.97362 0.94552 1.21202 0.99593 0.91231 0.84233 1.44081 1.51761 1.33511 1.02297 1.19200 1.38516 0.92329 0.88090 0.91293 1.25032 1.01126 0.95573 0.97889 1.70019 1.46909 1.04269 1.33439 0.86226 0.79898 0.78711 0.81962 1.20228 1.21503 1.21648 1.21587 0.93127 0.89203 0.97844 1.23103 0.99170 0.95953 0.84945 1.87675 1.61508 1.51029 1.29417 1.23419 0.94448 1.01882 0.98166 0.93942 0.93871 0.89571 0.90317 0.90141 0.87519 0.86789 0.90951 0.91482 0.89564 0.89373 0.90760 0.89752 0.88451 0.95282 0.93486 0.95578 0.91912 0.89934 0.93382 0.88690 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.85 101.05 1.10 1.30 16 2 O -0.37 -3.69 10.63 -35.23 -0.37 -4.07 16 3 C 0.06 0.59 4.38 -25.83 -0.11 0.47 16 4 C -0.12 -1.26 7.23 -25.92 -0.19 -1.45 16 5 C -0.12 -1.49 3.09 -90.96 -0.28 -1.77 16 6 C 0.53 8.49 7.38 -10.98 -0.08 8.41 16 7 O -0.55 -10.46 16.24 5.55 0.09 -10.37 16 8 N -0.61 -9.79 3.33 -170.68 -0.57 -10.35 16 9 C 0.10 1.42 6.68 -2.43 -0.02 1.40 16 10 C -0.14 -2.38 5.91 -24.86 -0.15 -2.53 16 11 C 0.09 1.61 0.83 -89.73 -0.07 1.54 16 12 C 0.12 2.26 6.24 -3.33 -0.02 2.24 16 13 C 0.16 3.78 3.95 -3.85 -0.02 3.76 16 14 N -0.59 -14.20 2.94 -172.18 -0.51 -14.71 16 15 C -0.25 -6.58 9.66 -15.06 -0.15 -6.72 16 16 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 17 C 0.00 0.07 4.96 -17.43 -0.09 -0.02 16 18 N -0.90 -25.36 11.12 55.49 0.62 -24.74 16 19 Si 0.90 20.91 29.59 -169.99 -5.03 15.88 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.11 2.19 6.71 -3.54 -0.02 2.17 16 24 C 0.05 0.79 6.76 37.30 0.25 1.04 16 25 O -0.38 -7.13 10.22 -35.23 -0.36 -7.49 16 26 C -0.14 -1.46 6.96 -25.83 -0.18 -1.64 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.62 7.87 -51.93 -0.41 0.21 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.11 1.24 7.45 -51.93 -0.39 0.86 16 33 H 0.11 1.29 8.12 -51.93 -0.42 0.87 16 34 H 0.07 0.85 7.05 -51.93 -0.37 0.49 16 35 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 36 H 0.09 1.53 7.86 -51.93 -0.41 1.13 16 37 H 0.09 1.44 5.98 -51.93 -0.31 1.13 16 38 H 0.07 1.39 8.06 -51.93 -0.42 0.97 16 39 H 0.08 1.61 7.79 -51.93 -0.40 1.20 16 40 H 0.10 2.48 5.96 -51.93 -0.31 2.17 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 45 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.05 0.78 6.13 -51.93 -0.32 0.47 16 47 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 48 H 0.08 0.79 7.96 -51.93 -0.41 0.38 16 LS Contribution 374.62 15.07 5.65 5.65 Total: -1.00 -31.13 374.62 -8.44 -39.57 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.93 Total: 2.42 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -0.02 Total: 8.21 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: -0.46 Total: -49.80 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.64 Total: -21.93 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.13 -8.44 -39.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972424216.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.762 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds