Wall clock time and date at job start Fri Apr 10 2020 18:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42909 * 113.99666 * 2 1 4 4 C 1.53786 * 113.61177 * 150.00201 * 3 2 1 5 5 C 1.53776 * 87.08039 * 89.11075 * 4 3 2 6 6 C 1.50709 * 113.61390 * 139.97892 * 5 4 3 7 7 O 1.21284 * 119.99343 * 1.52713 * 6 5 4 8 8 N 1.34775 * 120.00175 * 181.52794 * 6 5 4 9 9 C 1.47485 * 125.66339 * 359.97438 * 8 6 5 10 10 C 1.55022 * 104.89927 * 156.00099 * 9 8 6 11 11 C 1.54526 * 101.52014 * 36.37721 * 10 9 8 12 12 C 1.47183 * 125.66335 * 179.97438 * 8 6 5 13 13 C 1.52520 * 110.04593 * 206.89562 * 11 10 9 14 14 N 1.47301 * 108.39885 * 287.92345 * 13 11 10 15 15 C 1.36942 * 121.06629 * 130.60794 * 14 13 11 16 16 H 1.08001 * 119.99861 * 205.76184 * 15 14 13 17 17 C 1.38806 * 119.99590 * 25.76170 * 15 14 13 18 18 N 1.31615 * 120.00496 * 16.75307 * 17 15 14 19 19 Si 1.86801 * 119.99795 * 196.75503 * 17 15 14 20 20 H 1.48501 * 109.47253 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47232 * 119.99636 * 19 17 15 22 22 H 1.48505 * 109.47239 * 239.99884 * 19 17 15 23 23 C 1.47164 * 117.87352 * 310.62291 * 14 13 11 24 24 C 1.53279 * 108.55261 * 51.12347 * 23 14 13 25 25 O 1.42066 * 110.32342 * 83.93182 * 11 10 9 26 26 C 1.53781 * 87.17605 * 25.38857 * 5 4 3 27 27 H 1.08999 * 109.46943 * 300.00453 * 1 2 3 28 28 H 1.08998 * 109.47213 * 59.99818 * 1 2 3 29 29 H 1.08996 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09000 * 112.85055 * 18.80308 * 3 2 1 31 31 H 1.08999 * 113.61308 * 334.56380 * 4 3 2 32 32 H 1.08999 * 113.60766 * 203.66092 * 4 3 2 33 33 H 1.08997 * 113.61938 * 270.79466 * 5 4 3 34 34 H 1.08996 * 110.35845 * 37.14471 * 9 8 6 35 35 H 1.09009 * 110.35608 * 274.85848 * 9 8 6 36 36 H 1.08995 * 111.01710 * 278.31996 * 10 9 8 37 37 H 1.09000 * 111.01558 * 154.43212 * 10 9 8 38 38 H 1.09003 * 109.90854 * 62.11012 * 12 8 6 39 39 H 1.09004 * 109.91027 * 300.85186 * 12 8 6 40 40 H 1.09005 * 109.67873 * 47.64801 * 13 11 10 41 41 H 1.09003 * 109.67700 * 168.19262 * 13 11 10 42 42 H 0.96996 * 120.00178 * 180.02562 * 18 17 15 43 43 H 1.08991 * 109.62610 * 291.39972 * 23 14 13 44 44 H 1.09005 * 109.77672 * 170.93166 * 23 14 13 45 45 H 1.08994 * 109.51773 * 187.17590 * 24 23 14 46 46 H 1.08996 * 109.51717 * 67.01634 * 24 23 14 47 47 H 1.09002 * 113.61566 * 89.15693 * 26 5 4 48 48 H 1.09000 * 113.61607 * 220.05690 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.3756 1.3720 0.7045 5 6 4.0061 1.0331 -0.6565 6 6 5.2717 1.7996 -0.9432 7 8 5.7114 2.5737 -0.1195 8 7 5.9146 1.6249 -2.1147 9 6 5.4933 0.7196 -3.2001 10 6 6.1351 1.3089 -4.4823 11 6 7.4892 1.8211 -3.9423 12 6 7.1538 2.3058 -2.5233 13 6 7.9897 2.9790 -4.7996 14 7 8.4319 2.4396 -6.0970 15 6 8.0111 2.9975 -7.2747 16 1 7.9766 2.3997 -8.1735 17 6 7.6290 4.3314 -7.3132 18 7 7.9708 5.1425 -6.3346 19 14 6.6295 4.9754 -8.7539 20 1 6.3778 3.8713 -9.7146 21 1 5.3340 5.5069 -8.2595 22 1 7.3827 6.0600 -9.4334 23 6 9.3402 1.2817 -6.0872 24 6 8.7391 0.1981 -5.1850 25 8 8.4376 0.7640 -3.9058 26 6 2.7538 1.6474 -1.3040 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.3137 2.0790 0.3238 31 1 3.5170 0.5959 1.4566 32 1 3.6311 2.3672 1.0684 33 1 4.1098 -0.0371 -0.8353 34 1 4.4070 0.7132 -3.2884 35 1 5.8656 -0.2888 -3.0188 36 1 5.5363 2.1294 -4.8775 37 1 6.2823 0.5358 -5.2365 38 1 7.9630 2.0449 -1.8412 39 1 7.0008 3.3850 -2.5260 40 1 7.1832 3.6956 -4.9557 41 1 8.8260 3.4697 -4.3017 42 1 7.7034 6.0745 -6.3614 43 1 10.3131 1.5829 -5.6991 44 1 9.4540 0.8937 -7.0994 45 1 9.4560 -0.6139 -5.0640 46 1 7.8251 -0.1866 -5.6374 47 1 2.8391 2.7180 -1.4902 48 1 2.3941 1.0933 -2.1710 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972424216.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:59 Heat of formation + Delta-G solvation = -82.881627 kcal Electronic energy + Delta-G solvation = -29115.953306 eV Core-core repulsion = 25172.246128 eV Total energy + Delta-G solvation = -3943.707178 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.83834 -40.83575 -39.37760 -37.53354 -36.50533 -36.26958 -33.27320 -32.88152 -30.88190 -29.31313 -28.38015 -27.40635 -26.75168 -26.12976 -25.20279 -23.97460 -23.01332 -21.25637 -20.50810 -19.89735 -18.96793 -18.63876 -17.57744 -17.27642 -17.00531 -16.76966 -16.44601 -16.15889 -15.97153 -15.81280 -15.77341 -15.29948 -15.20113 -14.74963 -14.56279 -14.21890 -13.97495 -13.72387 -13.64846 -13.45469 -13.13317 -13.08241 -12.87970 -12.84416 -12.65275 -12.48930 -12.36283 -12.28026 -12.10927 -11.85636 -11.81448 -11.69750 -11.43324 -11.15626 -10.88750 -10.73695 -10.47676 -10.44242 -9.74567 -8.73935 -7.89825 -5.36124 1.45846 1.48387 1.53466 1.58436 1.88894 2.47821 2.71070 2.75069 3.22572 3.33092 3.44469 3.54384 3.58572 3.66628 3.76252 3.94792 3.98073 4.20047 4.24416 4.30986 4.34679 4.38163 4.51606 4.53132 4.58225 4.62414 4.62602 4.69224 4.73758 4.77114 4.81621 4.90843 4.91394 4.98227 5.03285 5.06169 5.06694 5.11741 5.14871 5.25346 5.26503 5.49710 5.62005 6.28649 6.28762 6.37686 6.49920 7.05714 7.07779 7.75204 8.29899 9.16603 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.003345 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.349505 B = 8369.223077 C = 9135.267366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.386 6.386 3 C 0.074 3.926 4 C -0.119 4.119 5 C -0.121 4.121 6 C 0.531 3.469 7 O -0.587 6.587 8 N -0.612 5.612 9 C 0.111 3.889 10 C -0.137 4.137 11 C 0.095 3.905 12 C 0.129 3.871 13 C 0.176 3.824 14 N -0.608 5.608 15 C -0.255 4.255 16 H 0.077 0.923 17 C -0.051 4.051 18 N -0.938 5.938 19 Si 0.967 3.033 20 H -0.261 1.261 21 H -0.291 1.291 22 H -0.297 1.297 23 C 0.102 3.898 24 C 0.052 3.948 25 O -0.383 6.383 26 C -0.137 4.137 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.129 0.871 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.068 0.932 41 H -0.011 1.011 42 H 0.249 0.751 43 H 0.012 0.988 44 H 0.076 0.924 45 H 0.119 0.881 46 H 0.064 0.936 47 H 0.088 0.912 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.365 -13.327 9.128 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.305 6.305 3 C 0.016 3.984 4 C -0.157 4.157 5 C -0.141 4.141 6 C 0.322 3.678 7 O -0.468 6.468 8 N -0.344 5.344 9 C -0.011 4.011 10 C -0.175 4.175 11 C 0.054 3.946 12 C 0.005 3.995 13 C 0.049 3.951 14 N -0.333 5.333 15 C -0.385 4.385 16 H 0.095 0.905 17 C -0.247 4.247 18 N -0.585 5.585 19 Si 0.795 3.205 20 H -0.185 1.185 21 H -0.217 1.217 22 H -0.224 1.224 23 C -0.024 4.024 24 C -0.025 4.025 25 O -0.303 6.303 26 C -0.175 4.175 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.147 0.853 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.007 0.993 42 H 0.058 0.942 43 H 0.030 0.970 44 H 0.095 0.905 45 H 0.137 0.863 46 H 0.082 0.918 47 H 0.106 0.894 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.008 -13.011 9.773 21.472 hybrid contribution 0.128 1.453 -1.010 1.775 sum -13.880 -11.558 8.763 20.075 Atomic orbital electron populations 1.23019 0.79279 1.03943 1.00983 1.87857 1.21529 1.26559 1.94571 1.22990 0.94305 0.85765 0.95360 1.23102 0.93757 1.03403 0.95404 1.22755 0.89985 1.01105 1.00295 1.20950 0.85542 0.82129 0.79229 1.90655 1.68968 1.39918 1.47247 1.48688 1.25221 1.43296 1.17237 1.22507 1.00975 0.93325 0.84282 1.23081 0.95197 1.01784 0.97423 1.22283 0.89591 0.89178 0.93580 1.21520 0.87242 0.96526 0.94187 1.20900 0.97124 0.92387 0.84674 1.44341 1.52715 1.34310 1.01901 1.19557 1.37489 0.92456 0.88970 0.90549 1.25795 1.02513 0.95978 1.00375 1.70193 1.48543 1.04190 1.35549 0.85213 0.77975 0.78060 0.79248 1.18515 1.21733 1.22430 1.21809 0.92101 0.88877 0.99582 1.23202 1.00581 0.95261 0.83431 1.87679 1.61567 1.50462 1.30546 1.23419 0.93369 1.01542 0.99164 0.92954 0.93096 0.88391 0.88548 0.89768 0.88771 0.85305 0.87949 0.89620 0.91182 0.88378 0.91734 0.91873 0.91355 0.99310 0.94160 0.96999 0.90549 0.86278 0.91771 0.89372 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.85 113.37 1.23 1.48 16 2 O -0.39 -6.56 10.63 -148.98 -1.58 -8.14 16 3 C 0.07 1.22 4.38 31.18 0.14 1.35 16 4 C -0.12 -2.43 7.23 31.12 0.22 -2.20 16 5 C -0.12 -2.66 3.09 -11.01 -0.03 -2.70 16 6 C 0.53 16.58 7.38 87.66 0.65 17.22 16 7 O -0.59 -22.98 16.24 -3.04 -0.05 -23.03 16 8 N -0.61 -19.19 3.33 -812.30 -2.71 -21.89 16 9 C 0.11 2.78 6.68 86.88 0.58 3.36 16 10 C -0.14 -4.33 5.91 31.81 0.19 -4.15 16 11 C 0.10 3.62 0.83 -10.22 -0.01 3.61 16 12 C 0.13 4.83 6.24 86.47 0.54 5.37 16 13 C 0.18 8.48 3.95 86.07 0.34 8.82 16 14 N -0.61 -29.51 2.94 -698.64 -2.06 -31.56 16 15 C -0.26 -13.34 9.66 84.03 0.81 -12.53 16 16 H 0.08 3.82 7.88 -2.91 -0.02 3.80 16 17 C -0.05 -2.79 4.96 84.86 0.42 -2.37 16 18 N -0.94 -54.95 11.12 21.65 0.24 -54.71 16 19 Si 0.97 43.42 29.59 68.60 2.03 45.45 16 20 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 23 C 0.10 4.02 6.71 86.35 0.58 4.60 16 24 C 0.05 1.65 6.76 72.08 0.49 2.14 16 25 O -0.38 -13.99 10.22 -148.97 -1.52 -15.52 16 26 C -0.14 -2.50 6.96 31.18 0.22 -2.28 16 27 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.10 1.26 7.87 -2.39 -0.02 1.24 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 2.17 7.45 -2.39 -0.02 2.16 16 33 H 0.13 2.51 8.12 -2.39 -0.02 2.49 16 34 H 0.10 2.01 7.05 -2.39 -0.02 1.99 16 35 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.07 2.46 7.86 -2.39 -0.02 2.44 16 37 H 0.10 2.92 5.98 -2.39 -0.01 2.91 16 38 H 0.06 2.51 8.06 -2.39 -0.02 2.49 16 39 H 0.06 2.60 7.79 -2.38 -0.02 2.58 16 40 H 0.07 3.68 5.96 -2.38 -0.01 3.67 16 41 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 42 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 43 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.08 2.77 7.96 -2.38 -0.02 2.76 16 45 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 46 H 0.06 1.86 6.13 -2.39 -0.01 1.84 16 47 H 0.09 1.75 8.09 -2.39 -0.02 1.73 16 48 H 0.10 1.50 7.96 -2.39 -0.02 1.48 16 Total: -1.00 -69.78 374.62 1.65 -68.13 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.94 Total: 19.54 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 6.36 Total: 21.74 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -4.52 Total: -108.17 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -3.16 Total: -46.69 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -69.78 1.65 -68.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972424216.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.755 kcal (2) G-P(sol) polarization free energy of solvation -69.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds