Wall clock time and date at job start Fri Apr 10 2020 18:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99624 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 109.47228 * 325.27455 * 10 9 7 12 12 C 1.52999 * 109.47341 * 85.27615 * 10 9 7 13 13 C 1.52997 * 109.47188 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46860 * 299.99296 * 13 12 10 15 15 C 1.53003 * 109.46811 * 60.01012 * 14 13 12 16 16 H 1.08999 * 109.47531 * 59.99527 * 15 14 13 17 17 N 1.46503 * 109.46967 * 179.97438 * 15 14 13 18 18 C 1.34778 * 119.99436 * 274.98937 * 17 15 14 19 19 O 1.21274 * 120.00386 * 0.02562 * 18 17 15 20 20 C 1.50699 * 119.99678 * 180.02562 * 18 17 15 21 21 N 1.46899 * 109.47186 * 180.02562 * 20 18 17 22 22 C 1.47193 * 110.99822 * 169.99832 * 21 20 18 23 23 C 1.52976 * 108.72859 * 54.36930 * 22 21 20 24 24 N 1.46012 * 110.04388 * 50.29168 * 23 22 21 25 25 C 1.33715 * 122.92577 * 341.83944 * 24 23 22 26 26 O 1.21278 * 118.62548 * 181.69250 * 25 24 23 27 27 C 1.46895 * 110.99952 * 292.89262 * 21 20 18 28 28 C 1.53001 * 109.47193 * 205.27576 * 10 9 7 29 29 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46823 * 300.00095 * 12 10 9 32 32 H 1.08999 * 109.47091 * 59.99755 * 12 10 9 33 33 H 1.09002 * 109.46693 * 180.02562 * 13 12 10 34 34 H 1.08993 * 109.47585 * 60.00233 * 13 12 10 35 35 H 1.08999 * 109.47459 * 300.00495 * 14 13 12 36 36 H 1.09005 * 109.47227 * 180.02562 * 14 13 12 37 37 H 0.96995 * 120.00235 * 94.99920 * 17 15 14 38 38 H 1.09007 * 109.47350 * 300.00336 * 20 18 17 39 39 H 1.08997 * 109.47181 * 60.00135 * 20 18 17 40 40 H 1.09004 * 109.59057 * 174.14202 * 22 21 20 41 41 H 1.08998 * 109.59796 * 294.59028 * 22 21 20 42 42 H 1.09006 * 109.37533 * 170.46566 * 23 22 21 43 43 H 1.09000 * 109.38158 * 290.22832 * 23 22 21 44 44 H 0.97002 * 118.53318 * 161.85833 * 24 23 22 45 45 H 1.08993 * 109.38595 * 47.08467 * 27 21 20 46 46 H 1.08999 * 109.38577 * 166.77666 * 27 21 20 47 47 H 1.08999 * 109.46935 * 300.00059 * 28 10 9 48 48 H 1.09004 * 109.47138 * 59.99988 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 2.9688 -3.5479 -0.5938 12 6 2.4214 -4.0423 1.4302 13 6 3.1869 -5.3670 1.4242 14 6 2.3103 -6.4598 0.8092 15 6 1.9469 -6.0744 -0.6263 16 1 2.8578 -5.9650 -1.2148 17 7 1.1080 -7.1210 -1.2154 18 6 1.6788 -8.1999 -1.7870 19 8 2.8868 -8.3046 -1.8131 20 6 0.8160 -9.2763 -2.3935 21 7 1.6707 -10.3354 -2.9464 22 6 0.8719 -11.5098 -3.3329 23 6 -0.2364 -11.0580 -4.2857 24 7 0.3280 -10.2489 -5.3621 25 6 1.5344 -9.6772 -5.2857 26 8 1.9140 -8.9951 -6.2138 27 6 2.4393 -9.8442 -4.0978 28 6 1.1809 -4.7493 -0.6201 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 3.0462 -3.2640 1.8683 32 1 1.5105 -4.1512 2.0189 33 1 3.4454 -5.6418 2.4469 34 1 4.0978 -5.2577 0.8358 35 1 1.3994 -6.5691 1.3977 36 1 2.8554 -7.4037 0.8053 37 1 0.1419 -7.0374 -1.1943 38 1 0.1669 -9.6974 -1.6257 39 1 0.2067 -8.8480 -3.1894 40 1 1.5105 -12.2374 -3.8338 41 1 0.4291 -11.9594 -2.4441 42 1 -0.7271 -11.9337 -4.7107 43 1 -0.9673 -10.4655 -3.7354 44 1 -0.1956 -10.1201 -6.1684 45 1 2.8903 -8.8838 -3.8486 46 1 3.2254 -10.5595 -4.3397 47 1 0.2701 -4.8582 -0.0314 48 1 0.9220 -4.4747 -1.6427 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981269431.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:33 Heat of formation + Delta-G solvation = -55.776425 kcal Electronic energy + Delta-G solvation = -28088.351394 eV Core-core repulsion = 24178.112337 eV Total energy + Delta-G solvation = -3910.239057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.23172 -39.80285 -38.15767 -37.36671 -34.79076 -34.41882 -33.35395 -31.13418 -30.30191 -30.16824 -28.52706 -27.65212 -25.42972 -23.76891 -23.35971 -22.07366 -21.49673 -20.41374 -19.80374 -19.21596 -17.81757 -17.63871 -17.03499 -16.63374 -16.32983 -16.04728 -15.56717 -15.21695 -14.86038 -14.66603 -14.40329 -14.19386 -13.87636 -13.61443 -13.50578 -13.48932 -13.16936 -12.97797 -12.71605 -12.26349 -12.13241 -12.05885 -11.96916 -11.82366 -10.98943 -10.93400 -10.85692 -10.79986 -10.71995 -10.34176 -10.29355 -10.16857 -10.06096 -9.69605 -9.60437 -9.56866 -9.00069 -8.85590 -8.76289 -6.95994 -5.76525 -3.05070 2.22605 2.53917 2.65496 2.93046 3.45078 3.49369 3.50001 3.51333 4.03091 4.29570 4.35470 4.46863 4.58661 4.70563 4.76468 4.88548 4.96540 4.99492 5.10248 5.11073 5.21974 5.33061 5.44523 5.51003 5.60854 5.69245 5.74828 5.87760 5.97802 6.02878 6.10525 6.14863 6.26987 6.31021 6.34152 6.39478 6.52567 6.54556 6.62901 6.73417 6.81230 6.97307 7.12871 7.47393 7.71053 7.77343 8.18150 8.42407 9.53470 10.10602 10.45347 11.46215 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.002468 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.964780 B =11341.940125 C =12099.527449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.183 3.817 11 H 0.048 0.952 12 C -0.136 4.136 13 C -0.115 4.115 14 C -0.122 4.122 15 C 0.150 3.850 16 H 0.087 0.913 17 N -0.724 5.724 18 C 0.512 3.488 19 O -0.522 6.522 20 C 0.025 3.975 21 N -0.505 5.505 22 C 0.036 3.964 23 C 0.070 3.930 24 N -0.727 5.727 25 C 0.484 3.516 26 O -0.545 6.545 27 C 0.036 3.964 28 C -0.129 4.129 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.398 0.602 38 H 0.111 0.889 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.399 0.601 45 H 0.130 0.870 46 H 0.116 0.884 47 H 0.064 0.936 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.062 -27.382 -4.148 27.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.066 0.934 12 C -0.177 4.177 13 C -0.154 4.154 14 C -0.161 4.161 15 C 0.046 3.954 16 H 0.106 0.894 17 N -0.375 5.375 18 C 0.297 3.703 19 O -0.398 6.398 20 C -0.106 4.106 21 N -0.229 5.229 22 C -0.092 4.092 23 C -0.056 4.056 24 N -0.382 5.382 25 C 0.270 3.730 26 O -0.421 6.421 27 C -0.094 4.094 28 C -0.168 4.168 29 H 0.065 0.935 30 H 0.216 0.784 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.232 0.768 38 H 0.129 0.871 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.121 0.879 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.235 0.765 45 H 0.147 0.853 46 H 0.134 0.866 47 H 0.083 0.917 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.376 -27.098 -4.091 27.440 hybrid contribution -1.400 1.186 -0.830 2.014 sum -2.776 -25.912 -4.921 26.521 Atomic orbital electron populations 1.69651 1.05106 1.25735 1.57830 1.24733 0.95516 0.97675 1.03064 0.86276 0.78533 0.83560 0.77887 1.21260 1.21734 1.21258 1.19206 0.91002 0.84076 1.42561 0.91190 1.42393 1.05722 0.99716 1.88634 1.20096 0.94115 0.85521 0.92980 0.93370 1.22285 0.99693 0.95265 1.00438 1.21487 0.98554 0.95379 0.99935 1.21869 1.00056 0.98859 0.95328 1.21045 0.94452 0.86009 0.93940 0.89447 1.46143 1.10487 1.21491 1.59344 1.20320 0.89082 0.82499 0.78415 1.90697 1.14335 1.77393 1.57345 1.22152 0.95222 0.92716 1.00549 1.62197 1.25073 1.05785 1.29795 1.22678 0.94249 0.93416 0.98904 1.22169 0.97591 0.95975 0.89892 1.45682 1.18903 1.52860 1.20705 1.21502 0.82552 0.78640 0.90309 1.90790 1.73143 1.38772 1.39426 1.22653 0.95839 1.06069 0.84849 1.22105 0.99336 0.93427 1.01958 0.93509 0.78360 0.91910 0.92688 0.92515 0.92162 0.92137 0.92098 0.76835 0.87140 0.91483 0.88994 0.87906 0.89706 0.91185 0.76500 0.85264 0.86611 0.91731 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -17.84 5.12 -53.43 -0.27 -18.11 16 10 C 0.18 3.55 2.77 -67.93 -0.19 3.36 16 11 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 12 C -0.14 -2.38 5.50 -26.73 -0.15 -2.53 16 13 C -0.11 -1.63 5.92 -26.73 -0.16 -1.79 16 14 C -0.12 -1.60 5.49 -26.73 -0.15 -1.75 16 15 C 0.15 2.03 2.46 -67.90 -0.17 1.87 16 16 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 17 N -0.72 -7.83 5.08 -53.78 -0.27 -8.10 16 18 C 0.51 5.86 7.39 -10.99 -0.08 5.78 16 19 O -0.52 -7.94 14.18 5.56 0.08 -7.86 16 20 C 0.02 0.19 4.51 -4.98 -0.02 0.16 16 21 N -0.51 -3.97 4.75 -237.56 -1.13 -5.10 16 22 C 0.04 0.15 6.03 -3.68 -0.02 0.13 16 23 C 0.07 0.25 6.46 -4.32 -0.03 0.22 16 24 N -0.73 -5.04 5.33 -61.06 -0.33 -5.37 16 25 C 0.48 5.21 7.06 -11.67 -0.08 5.13 16 26 O -0.55 -8.46 17.82 5.56 0.10 -8.36 16 27 C 0.04 0.36 5.49 -5.19 -0.03 0.33 16 28 C -0.13 -2.01 4.86 -26.70 -0.13 -2.14 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.40 3.28 8.60 -40.82 -0.35 2.93 16 38 H 0.11 0.53 8.08 -51.93 -0.42 0.11 16 39 H 0.07 0.48 6.23 -51.93 -0.32 0.16 16 40 H 0.09 0.36 8.08 -51.93 -0.42 -0.06 16 41 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 43 H 0.07 0.20 7.09 -51.93 -0.37 -0.17 16 44 H 0.40 2.53 8.84 -40.82 -0.36 2.17 16 45 H 0.13 1.66 5.88 -51.93 -0.31 1.35 16 46 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 48 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 377.56 15.07 5.69 5.69 Total: -1.00 -35.46 377.56 -9.76 -45.21 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -7.88 Total: 10.35 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -1.45 Total: 1.56 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -1.28 Total: -64.04 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.18 Total: -16.22 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.46 -9.76 -45.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981269431.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.566 kcal (2) G-P(sol) polarization free energy of solvation -35.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds