Wall clock time and date at job start Fri Apr 10 2020 18:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99624 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 109.47228 * 325.27455 * 10 9 7 12 12 C 1.52999 * 109.47341 * 85.27615 * 10 9 7 13 13 C 1.52997 * 109.47188 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46860 * 299.99296 * 13 12 10 15 15 C 1.53003 * 109.46811 * 60.01012 * 14 13 12 16 16 H 1.08999 * 109.47531 * 59.99527 * 15 14 13 17 17 N 1.46503 * 109.46967 * 179.97438 * 15 14 13 18 18 C 1.34778 * 119.99436 * 274.98937 * 17 15 14 19 19 O 1.21274 * 120.00386 * 0.02562 * 18 17 15 20 20 C 1.50699 * 119.99678 * 180.02562 * 18 17 15 21 21 N 1.46899 * 109.47186 * 180.02562 * 20 18 17 22 22 C 1.47193 * 110.99822 * 169.99832 * 21 20 18 23 23 C 1.52976 * 108.72859 * 54.36930 * 22 21 20 24 24 N 1.46012 * 110.04388 * 50.29168 * 23 22 21 25 25 C 1.33715 * 122.92577 * 341.83944 * 24 23 22 26 26 O 1.21278 * 118.62548 * 181.69250 * 25 24 23 27 27 C 1.46895 * 110.99952 * 292.89262 * 21 20 18 28 28 C 1.53001 * 109.47193 * 205.27576 * 10 9 7 29 29 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46823 * 300.00095 * 12 10 9 32 32 H 1.08999 * 109.47091 * 59.99755 * 12 10 9 33 33 H 1.09002 * 109.46693 * 180.02562 * 13 12 10 34 34 H 1.08993 * 109.47585 * 60.00233 * 13 12 10 35 35 H 1.08999 * 109.47459 * 300.00495 * 14 13 12 36 36 H 1.09005 * 109.47227 * 180.02562 * 14 13 12 37 37 H 0.96995 * 120.00235 * 94.99920 * 17 15 14 38 38 H 1.09007 * 109.47350 * 300.00336 * 20 18 17 39 39 H 1.08997 * 109.47181 * 60.00135 * 20 18 17 40 40 H 1.09004 * 109.59057 * 174.14202 * 22 21 20 41 41 H 1.08998 * 109.59796 * 294.59028 * 22 21 20 42 42 H 1.09006 * 109.37533 * 170.46566 * 23 22 21 43 43 H 1.09000 * 109.38158 * 290.22832 * 23 22 21 44 44 H 0.97002 * 118.53318 * 161.85833 * 24 23 22 45 45 H 1.08993 * 109.38595 * 47.08467 * 27 21 20 46 46 H 1.08999 * 109.38577 * 166.77666 * 27 21 20 47 47 H 1.08999 * 109.46935 * 300.00059 * 28 10 9 48 48 H 1.09004 * 109.47138 * 59.99988 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 2.9688 -3.5479 -0.5938 12 6 2.4214 -4.0423 1.4302 13 6 3.1869 -5.3670 1.4242 14 6 2.3103 -6.4598 0.8092 15 6 1.9469 -6.0744 -0.6263 16 1 2.8578 -5.9650 -1.2148 17 7 1.1080 -7.1210 -1.2154 18 6 1.6788 -8.1999 -1.7870 19 8 2.8868 -8.3046 -1.8131 20 6 0.8160 -9.2763 -2.3935 21 7 1.6707 -10.3354 -2.9464 22 6 0.8719 -11.5098 -3.3329 23 6 -0.2364 -11.0580 -4.2857 24 7 0.3280 -10.2489 -5.3621 25 6 1.5344 -9.6772 -5.2857 26 8 1.9140 -8.9951 -6.2138 27 6 2.4393 -9.8442 -4.0978 28 6 1.1809 -4.7493 -0.6201 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 3.0462 -3.2640 1.8683 32 1 1.5105 -4.1512 2.0189 33 1 3.4454 -5.6418 2.4469 34 1 4.0978 -5.2577 0.8358 35 1 1.3994 -6.5691 1.3977 36 1 2.8554 -7.4037 0.8053 37 1 0.1419 -7.0374 -1.1943 38 1 0.1669 -9.6974 -1.6257 39 1 0.2067 -8.8480 -3.1894 40 1 1.5105 -12.2374 -3.8338 41 1 0.4291 -11.9594 -2.4441 42 1 -0.7271 -11.9337 -4.7107 43 1 -0.9673 -10.4655 -3.7354 44 1 -0.1956 -10.1201 -6.1684 45 1 2.8903 -8.8838 -3.8486 46 1 3.2254 -10.5595 -4.3397 47 1 0.2701 -4.8582 -0.0314 48 1 0.9220 -4.4747 -1.6427 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981269431.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:32 Heat of formation + Delta-G solvation = -85.759822 kcal Electronic energy + Delta-G solvation = -28089.651571 eV Core-core repulsion = 24178.112337 eV Total energy + Delta-G solvation = -3911.539235 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.93887 -40.80240 -39.33614 -38.22316 -36.22891 -35.13026 -34.79734 -32.94433 -31.21565 -30.85662 -29.79926 -28.92121 -26.02777 -25.69013 -24.03649 -23.26374 -22.73006 -21.46413 -20.93723 -20.13342 -19.16078 -18.46884 -18.27368 -17.43446 -17.40057 -16.85770 -16.48466 -16.20639 -15.89202 -15.78252 -15.62262 -15.33578 -15.14688 -14.98846 -14.88132 -14.38341 -14.19988 -14.02167 -13.59823 -13.48719 -13.38623 -12.91469 -12.81971 -12.74625 -12.67820 -12.30554 -12.27926 -12.15830 -12.04579 -11.96834 -11.67062 -11.61167 -11.46906 -11.35838 -10.87334 -10.71499 -10.19494 -9.99933 -9.37922 -9.00412 -7.94755 -5.22419 1.41570 1.46356 1.48767 1.54680 1.67865 1.99079 2.19684 2.55981 2.86491 3.38418 3.49750 3.63682 3.72267 3.86883 3.88642 4.01546 4.06460 4.21274 4.25856 4.28908 4.32992 4.40411 4.46818 4.53751 4.54355 4.58366 4.68765 4.70713 4.77175 4.77687 4.99194 5.03801 5.14695 5.19268 5.23300 5.36926 5.49824 5.50552 5.53151 5.55749 5.66946 5.75718 5.85853 6.16261 6.28295 6.63312 7.04586 7.32710 7.34472 8.10250 8.34175 9.28433 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.002468 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.964780 B =11341.940125 C =12099.527449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.968 3.032 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.736 5.736 10 C 0.176 3.824 11 H 0.031 0.969 12 C -0.125 4.125 13 C -0.108 4.108 14 C -0.112 4.112 15 C 0.160 3.840 16 H 0.062 0.938 17 N -0.715 5.715 18 C 0.506 3.494 19 O -0.564 6.564 20 C 0.033 3.967 21 N -0.515 5.515 22 C 0.035 3.965 23 C 0.066 3.934 24 N -0.714 5.714 25 C 0.483 3.517 26 O -0.607 6.607 27 C 0.043 3.957 28 C -0.115 4.115 29 H 0.251 0.749 30 H 0.374 0.626 31 H 0.039 0.961 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.414 0.586 38 H 0.151 0.849 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.133 0.867 42 H 0.116 0.884 43 H 0.088 0.912 44 H 0.403 0.597 45 H 0.095 0.905 46 H 0.121 0.879 47 H 0.078 0.922 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.390 -30.055 -3.225 30.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.798 3.202 4 H -0.208 1.208 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.067 3.933 11 H 0.049 0.951 12 C -0.166 4.166 13 C -0.146 4.146 14 C -0.151 4.151 15 C 0.054 3.946 16 H 0.080 0.920 17 N -0.367 5.367 18 C 0.293 3.707 19 O -0.443 6.443 20 C -0.098 4.098 21 N -0.238 5.238 22 C -0.092 4.092 23 C -0.059 4.059 24 N -0.366 5.366 25 C 0.269 3.731 26 O -0.488 6.488 27 C -0.088 4.088 28 C -0.153 4.153 29 H 0.060 0.940 30 H 0.206 0.794 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.250 0.750 38 H 0.168 0.832 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.151 0.849 42 H 0.134 0.866 43 H 0.106 0.894 44 H 0.239 0.761 45 H 0.113 0.887 46 H 0.139 0.861 47 H 0.097 0.903 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.742 -29.854 -3.141 30.144 hybrid contribution -0.988 1.906 -1.111 2.417 sum -3.730 -27.948 -4.252 28.515 Atomic orbital electron populations 1.69793 1.06402 1.26034 1.59656 1.25489 0.96384 1.00827 1.03946 0.85287 0.77289 0.79584 0.78087 1.20765 1.22029 1.20426 1.19542 0.91265 0.85391 1.40887 0.91152 1.42563 1.05443 1.00788 1.88755 1.20312 0.93747 0.84825 0.94372 0.95058 1.22081 0.99697 0.96416 0.98357 1.21423 0.98059 0.93861 1.01284 1.21776 1.00466 0.98183 0.94649 1.20698 0.93563 0.85890 0.94404 0.92013 1.45972 1.11056 1.20700 1.58994 1.21100 0.89042 0.82989 0.77616 1.90688 1.16443 1.78319 1.58808 1.22196 0.94487 0.91656 1.01462 1.62212 1.26210 1.06666 1.28759 1.22878 0.94140 0.91821 1.00405 1.22489 0.97503 0.96850 0.89022 1.45706 1.17471 1.51695 1.21717 1.21662 0.83579 0.78150 0.89675 1.90757 1.74775 1.41782 1.41436 1.22426 0.96296 1.04592 0.85483 1.21883 0.99234 0.93190 1.01024 0.94036 0.79396 0.94204 0.92560 0.90498 0.92718 0.90467 0.91836 0.74977 0.83188 0.90828 0.88686 0.84912 0.86639 0.89353 0.76074 0.88700 0.86092 0.90316 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.14 13.06 21.65 0.28 -58.85 16 2 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 3 Si 0.97 46.75 29.55 68.60 2.03 48.77 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 7 C -0.24 -13.41 9.93 84.03 0.83 -12.58 16 8 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 9 N -0.74 -36.94 5.12 -322.94 -1.65 -38.59 16 10 C 0.18 6.91 2.77 44.99 0.12 7.04 16 11 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 12 C -0.13 -4.34 5.50 30.59 0.17 -4.17 16 13 C -0.11 -2.93 5.92 30.59 0.18 -2.75 16 14 C -0.11 -2.72 5.49 30.60 0.17 -2.55 16 15 C 0.16 4.23 2.46 45.01 0.11 4.34 16 16 H 0.06 1.98 7.58 -2.39 -0.02 1.96 16 17 N -0.71 -14.28 5.08 -442.44 -2.25 -16.52 16 18 C 0.51 10.90 7.39 87.66 0.65 11.55 16 19 O -0.56 -17.21 14.18 -3.01 -0.04 -17.25 16 20 C 0.03 0.39 4.51 85.56 0.39 0.78 16 21 N -0.52 -6.91 4.75 -905.50 -4.30 -11.21 16 22 C 0.03 0.15 6.03 86.24 0.52 0.67 16 23 C 0.07 0.19 6.46 86.46 0.56 0.75 16 24 N -0.71 -8.48 5.33 -466.09 -2.48 -10.96 16 25 C 0.48 10.34 7.06 87.68 0.62 10.96 16 26 O -0.61 -19.70 17.82 -3.02 -0.05 -19.76 16 27 C 0.04 0.86 5.49 85.42 0.47 1.33 16 28 C -0.11 -3.53 4.86 30.61 0.15 -3.38 16 29 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 30 H 0.37 19.84 7.80 -92.71 -0.72 19.12 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 36 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.41 5.70 8.60 -92.71 -0.80 4.91 16 38 H 0.15 0.66 8.08 -2.38 -0.02 0.64 16 39 H 0.07 0.83 6.23 -2.39 -0.01 0.82 16 40 H 0.09 0.41 8.08 -2.38 -0.02 0.39 16 41 H 0.13 -0.12 8.14 -2.39 -0.02 -0.13 16 42 H 0.12 -0.25 8.14 -2.38 -0.02 -0.27 16 43 H 0.09 0.04 7.09 -2.39 -0.02 0.02 16 44 H 0.40 4.42 8.84 -92.71 -0.82 3.60 16 45 H 0.09 2.59 5.88 -2.39 -0.01 2.57 16 46 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -81.04 377.56 -4.42 -85.46 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: -1.35 Total: 30.75 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 5.40 Total: 8.16 kcal Atomic # 7 Polarization: -125.73 SS G_CDS: -10.40 Total: -136.14 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -0.10 Total: -37.00 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Total: -81.04 -4.42 -85.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981269431.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.303 kcal (2) G-P(sol) polarization free energy of solvation -81.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds