Wall clock time and date at job start Fri Apr 10 2020 18:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 110.91615 * 2 1 4 4 C 1.55128 * 111.19729 * 236.08536 * 2 1 3 5 5 N 1.47423 * 104.72179 * 279.19386 * 4 2 1 6 6 C 1.34784 * 125.64606 * 155.81556 * 5 4 2 7 7 O 1.21283 * 120.00111 * 359.71595 * 6 5 4 8 8 C 1.50698 * 119.99619 * 179.71635 * 6 5 4 9 9 N 1.46904 * 109.46656 * 173.80707 * 8 6 5 10 10 C 1.47192 * 110.99816 * 293.67624 * 9 8 6 11 11 C 1.52988 * 108.85233 * 167.71524 * 10 9 8 12 12 N 1.46004 * 110.04242 * 50.21743 * 11 10 9 13 13 C 1.33715 * 122.92827 * 341.83780 * 12 11 10 14 14 O 1.21287 * 118.62418 * 181.68839 * 13 12 11 15 15 C 1.46864 * 111.09837 * 170.69692 * 9 8 6 16 16 C 1.47016 * 108.70343 * 335.55200 * 5 4 2 17 17 C 1.54326 * 107.27236 * 1.28535 * 16 5 4 18 18 H 1.08998 * 110.71984 * 140.73441 * 17 16 5 19 19 N 1.46492 * 110.72230 * 263.83110 * 17 16 5 20 20 C 1.36941 * 120.00307 * 273.54780 * 19 17 16 21 21 H 1.08004 * 119.99658 * 359.97438 * 20 19 17 22 22 C 1.38803 * 120.00229 * 179.97438 * 20 19 17 23 23 N 1.31621 * 120.00385 * 179.97438 * 22 20 19 24 24 Si 1.86806 * 120.00239 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46799 * 89.99677 * 24 22 20 26 26 H 1.48496 * 109.47445 * 209.99777 * 24 22 20 27 27 H 1.48501 * 109.46734 * 330.00368 * 24 22 20 28 28 H 1.08995 * 109.47435 * 296.10203 * 1 2 3 29 29 H 1.09003 * 109.46667 * 56.10238 * 1 2 3 30 30 H 1.09001 * 109.47144 * 176.09264 * 1 2 3 31 31 H 1.09000 * 109.47244 * 183.89914 * 3 2 1 32 32 H 1.09001 * 109.47124 * 303.89762 * 3 2 1 33 33 H 1.09006 * 109.47021 * 63.89771 * 3 2 1 34 34 H 1.08994 * 110.49696 * 160.34617 * 4 2 1 35 35 H 1.09003 * 110.33937 * 37.95421 * 4 2 1 36 36 H 1.08994 * 109.47257 * 53.80965 * 8 6 5 37 37 H 1.09003 * 109.47085 * 293.80028 * 8 6 5 38 38 H 1.08993 * 109.59567 * 47.86470 * 10 9 8 39 39 H 1.08998 * 109.59723 * 287.56403 * 10 9 8 40 40 H 1.09001 * 109.37311 * 170.39832 * 11 10 9 41 41 H 1.09002 * 109.37238 * 290.15522 * 11 10 9 42 42 H 0.96999 * 118.53149 * 161.86111 * 12 11 10 43 43 H 1.08999 * 109.26570 * 53.39312 * 15 9 8 44 44 H 1.09003 * 109.32594 * 293.71194 * 15 9 8 45 45 H 1.09001 * 109.88351 * 120.71003 * 16 5 4 46 46 H 1.08998 * 109.88355 * 241.86966 * 16 5 4 47 47 H 0.97004 * 120.00110 * 93.54476 * 19 17 16 48 48 H 0.97000 * 120.00601 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0909 -0.8070 -1.2003 5 7 2.0140 -2.2159 -0.7731 6 6 1.9472 -3.2830 -1.5939 7 8 1.9422 -3.1239 -2.7962 8 6 1.8789 -4.6737 -1.0175 9 7 1.6648 -5.6426 -2.1007 10 6 0.3410 -5.4600 -2.7177 11 6 0.2854 -6.2668 -4.0164 12 7 0.7268 -7.6371 -3.7734 13 6 1.4349 -7.9925 -2.6962 14 8 1.7876 -9.1479 -2.5880 15 6 1.8116 -7.0205 -1.6141 16 6 2.0285 -2.2646 0.6961 17 6 2.0861 -0.8078 1.2023 18 1 1.4547 -0.6798 2.0815 19 7 3.4665 -0.4155 1.4964 20 6 4.0064 -0.6803 2.7266 21 1 3.4143 -1.1782 3.4803 22 6 5.3146 -0.3091 3.0051 23 7 5.8334 -0.5632 4.1877 24 14 6.3390 0.5514 1.7012 25 1 6.1591 2.0206 1.8204 26 1 7.7716 0.2109 1.8929 27 1 5.9003 0.1067 0.3540 28 1 -0.3634 0.4521 0.9228 29 1 -0.3633 0.5732 -0.8530 30 1 -0.3633 -1.0253 -0.0700 31 1 3.1636 1.4026 -0.0699 32 1 1.6705 1.9732 -0.8530 33 1 1.7835 1.9300 0.9229 34 1 3.1253 -0.5266 -1.3986 35 1 1.4765 -0.6450 -2.0860 36 1 1.0532 -4.7330 -0.3085 37 1 2.8142 -4.9013 -0.5060 38 1 0.1821 -4.4041 -2.9363 39 1 -0.4322 -5.8123 -2.0351 40 1 -0.7379 -6.2776 -4.3918 41 1 0.9375 -5.8046 -4.7575 42 1 0.4965 -8.3201 -4.4226 43 1 1.1610 -7.1687 -0.7522 44 1 2.8471 -7.1906 -1.3193 45 1 1.1218 -2.7480 1.0600 46 1 2.9062 -2.8115 1.0403 47 1 3.9983 0.0320 0.8195 48 1 6.7474 -0.3034 4.3824 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996139776.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:06 Heat of formation + Delta-G solvation = -34.274924 kcal Electronic energy + Delta-G solvation = -28804.104190 eV Core-core repulsion = 24894.797507 eV Total energy + Delta-G solvation = -3909.306682 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.72294 -40.03913 -38.40619 -36.98187 -34.82789 -34.13200 -33.35689 -31.16948 -30.03615 -29.39957 -28.35950 -26.99256 -26.41543 -24.59701 -23.77609 -23.12934 -21.47935 -19.56599 -19.26072 -18.90461 -17.76685 -17.62689 -17.15785 -16.54919 -16.13971 -15.93682 -15.33090 -14.94031 -14.77689 -14.73018 -14.46645 -14.18727 -13.90256 -13.74207 -13.46771 -13.08561 -12.84915 -12.70811 -12.60504 -12.25662 -12.20927 -12.13556 -11.91719 -11.82593 -11.74129 -11.52435 -11.35780 -11.05544 -10.73929 -10.62643 -10.35692 -10.25873 -10.00898 -9.71748 -9.66434 -9.37085 -9.10050 -8.77108 -8.40192 -7.44249 -5.89991 -3.27515 2.33913 2.72171 2.88785 2.99490 3.28835 3.31361 3.38331 3.58794 4.25432 4.39023 4.47555 4.50273 4.68180 4.81813 4.86823 4.89844 4.98810 5.03430 5.08886 5.16538 5.19715 5.28183 5.41600 5.43613 5.47710 5.56355 5.61316 5.71658 5.75470 5.86916 5.95997 6.01881 6.05611 6.13529 6.16824 6.30778 6.34920 6.38389 6.49314 6.58009 6.60024 6.61137 6.98582 7.70688 7.84029 7.92055 8.28551 8.29515 9.05546 9.78129 9.96224 11.27600 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.003266 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.852800 B = 8570.610791 C = 9617.542413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.092 4.092 3 C -0.128 4.128 4 C 0.121 3.879 5 N -0.607 5.607 6 C 0.528 3.472 7 O -0.536 6.536 8 C 0.039 3.961 9 N -0.515 5.515 10 C 0.032 3.968 11 C 0.118 3.882 12 N -0.718 5.718 13 C 0.529 3.471 14 O -0.555 6.555 15 C 0.038 3.962 16 C 0.069 3.931 17 C 0.185 3.815 18 H 0.079 0.921 19 N -0.737 5.737 20 C -0.252 4.252 21 H 0.092 0.908 22 C 0.012 3.988 23 N -0.928 5.928 24 Si 0.879 3.121 25 H -0.282 1.282 26 H -0.290 1.290 27 H -0.277 1.277 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.042 0.958 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.400 0.600 43 H 0.075 0.925 44 H 0.118 0.882 45 H 0.058 0.942 46 H 0.081 0.919 47 H 0.364 0.636 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.157 -5.329 -12.985 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.093 4.093 3 C -0.186 4.186 4 C -0.001 4.001 5 N -0.341 5.341 6 C 0.316 3.684 7 O -0.413 6.413 8 C -0.091 4.091 9 N -0.241 5.241 10 C -0.096 4.096 11 C -0.006 4.006 12 N -0.371 5.371 13 C 0.315 3.685 14 O -0.433 6.433 15 C -0.092 4.092 16 C -0.057 4.057 17 C 0.074 3.926 18 H 0.097 0.903 19 N -0.379 5.379 20 C -0.381 4.381 21 H 0.110 0.890 22 C -0.185 4.185 23 N -0.575 5.575 24 Si 0.709 3.291 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.203 1.203 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.060 0.940 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.235 0.765 43 H 0.093 0.907 44 H 0.136 0.864 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.198 0.802 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.481 -5.726 -13.543 20.637 hybrid contribution 0.308 0.245 -0.366 0.538 sum -14.173 -5.481 -13.909 20.601 Atomic orbital electron populations 1.21654 0.93502 1.01578 1.01813 1.22086 0.95729 0.95869 0.95649 1.21604 1.01205 0.94034 1.01708 1.22293 1.00759 0.80013 0.97066 1.48448 1.71853 1.05974 1.07855 1.19922 0.76859 0.85304 0.86328 1.90667 1.50432 1.85924 1.14312 1.21992 1.04083 0.90350 0.92724 1.62083 1.30475 1.01680 1.29843 1.22603 0.88962 1.02874 0.95153 1.21486 1.00200 0.80926 0.98006 1.45568 1.55683 1.11457 1.24367 1.20021 0.76929 0.88690 0.82823 1.90781 1.54602 1.19829 1.78103 1.22316 1.04807 0.86612 0.95508 1.23264 1.01250 1.02710 0.78449 1.21172 0.87668 0.89136 0.94660 0.90328 1.42817 1.09551 1.71150 1.14422 1.19022 0.96345 1.33390 0.89365 0.88973 1.24646 0.96925 1.00608 0.96283 1.69685 1.15351 1.51840 1.20622 0.86657 0.80542 0.80083 0.81857 1.20851 1.21599 1.20341 0.92072 0.92716 0.92777 0.92272 0.93133 0.91564 0.91674 0.90953 0.91466 0.86947 0.87388 0.94008 0.90146 0.90258 0.76466 0.90711 0.86409 0.92364 0.90095 0.80170 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 8.59 37.16 0.32 -1.06 16 2 C -0.09 -1.22 0.83 -152.24 -0.13 -1.35 16 3 C -0.13 -1.71 8.22 37.16 0.31 -1.41 16 4 C 0.12 1.73 5.82 -2.41 -0.01 1.71 16 5 N -0.61 -8.63 3.31 -170.39 -0.56 -9.19 16 6 C 0.53 7.47 7.31 -10.98 -0.08 7.39 16 7 O -0.54 -8.95 15.04 5.55 0.08 -8.86 16 8 C 0.04 0.43 4.63 -4.97 -0.02 0.41 16 9 N -0.51 -5.64 4.42 -237.58 -1.05 -6.69 16 10 C 0.03 0.30 5.20 -3.67 -0.02 0.28 16 11 C 0.12 0.91 7.39 -4.32 -0.03 0.88 16 12 N -0.72 -6.53 5.52 -61.06 -0.34 -6.86 16 13 C 0.53 6.22 7.81 -11.68 -0.09 6.13 16 14 O -0.56 -8.54 17.83 5.55 0.10 -8.44 16 15 C 0.04 0.39 5.57 -5.21 -0.03 0.36 16 16 C 0.07 0.99 5.89 -3.07 -0.02 0.98 16 17 C 0.19 2.98 2.86 -66.10 -0.19 2.79 16 18 H 0.08 1.27 8.03 -51.93 -0.42 0.86 16 19 N -0.74 -15.29 4.41 -51.66 -0.23 -15.51 16 20 C -0.25 -6.40 10.46 -15.06 -0.16 -6.56 16 21 H 0.09 2.50 8.06 -52.48 -0.42 2.08 16 22 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 23 N -0.93 -27.62 13.97 55.49 0.78 -26.85 16 24 Si 0.88 21.00 27.74 -169.99 -4.71 16.29 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.57 7.91 -51.93 -0.41 0.16 16 31 H 0.06 0.90 6.37 -51.93 -0.33 0.57 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.03 7.99 -51.93 -0.41 0.62 16 35 H 0.07 0.99 7.95 -51.93 -0.41 0.57 16 36 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.11 1.22 8.09 -51.93 -0.42 0.80 16 38 H 0.11 1.13 6.05 -51.93 -0.31 0.82 16 39 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.40 3.05 8.84 -40.82 -0.36 2.69 16 43 H 0.08 0.64 8.11 -51.93 -0.42 0.22 16 44 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 47 H 0.36 7.66 3.96 -40.82 -0.16 7.50 16 48 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 378.09 15.07 5.70 5.70 Total: -1.00 -32.95 378.09 -8.39 -41.33 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.90 Total: 8.31 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: -0.25 Total: 10.78 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: -1.40 Total: -65.11 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.18 Total: -17.31 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.71 Total: 16.29 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.95 -8.39 -41.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996139776.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.058 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds