Wall clock time and date at job start Fri Apr 10 2020 18:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 110.91732 * 2 1 4 4 C 1.55128 * 111.19512 * 236.08080 * 2 1 3 5 5 N 1.47420 * 104.72176 * 279.19431 * 4 2 1 6 6 C 1.34780 * 125.64341 * 155.81783 * 5 4 2 7 7 O 1.21272 * 120.00424 * 359.71575 * 6 5 4 8 8 C 1.50706 * 119.99612 * 179.71654 * 6 5 4 9 9 H 1.08994 * 109.87406 * 40.43512 * 8 6 5 10 10 C 1.54328 * 110.00784 * 279.33562 * 8 6 5 11 11 C 1.55160 * 102.94326 * 262.70469 * 10 8 6 12 12 C 1.55131 * 101.48645 * 324.33272 * 11 10 8 13 13 N 1.47023 * 109.88322 * 161.45414 * 8 6 5 14 14 C 1.34775 * 125.64494 * 300.59454 * 13 8 6 15 15 N 1.34777 * 119.99585 * 179.97438 * 14 13 8 16 16 O 1.21583 * 120.00144 * 359.97438 * 14 13 8 17 17 C 1.47020 * 108.70744 * 335.55152 * 5 4 2 18 18 C 1.54322 * 107.26949 * 1.28654 * 17 5 4 19 19 H 1.09006 * 110.72248 * 140.55551 * 18 17 5 20 20 N 1.46502 * 110.72533 * 263.65430 * 18 17 5 21 21 C 1.36936 * 119.99838 * 273.54950 * 20 18 17 22 22 H 1.07997 * 120.00033 * 359.97438 * 21 20 18 23 23 C 1.38814 * 119.99867 * 179.97438 * 21 20 18 24 24 N 1.31616 * 119.99940 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47352 * 89.99484 * 25 23 21 27 27 H 1.48496 * 109.47257 * 209.99726 * 25 23 21 28 28 H 1.48502 * 109.46915 * 330.00073 * 25 23 21 29 29 H 1.09000 * 109.47510 * 296.10309 * 1 2 3 30 30 H 1.08999 * 109.47094 * 56.10234 * 1 2 3 31 31 H 1.09001 * 109.46923 * 176.10614 * 1 2 3 32 32 H 1.08995 * 109.47512 * 183.90106 * 3 2 1 33 33 H 1.09013 * 109.46614 * 303.89732 * 3 2 1 34 34 H 1.08995 * 109.47697 * 63.89233 * 3 2 1 35 35 H 1.09003 * 110.49428 * 160.34903 * 4 2 1 36 36 H 1.08997 * 110.34005 * 37.95907 * 4 2 1 37 37 H 1.08998 * 110.72418 * 21.07178 * 10 8 6 38 38 H 1.08999 * 110.72049 * 144.16452 * 10 8 6 39 39 H 1.08995 * 110.99892 * 82.57542 * 11 10 8 40 40 H 1.09002 * 111.00104 * 206.38948 * 11 10 8 41 41 H 1.08997 * 110.49832 * 278.45354 * 12 11 10 42 42 H 1.08995 * 110.33972 * 156.05601 * 12 11 10 43 43 H 0.97001 * 120.00485 * 0.02562 * 15 14 13 44 44 H 0.97005 * 119.99790 * 179.72200 * 15 14 13 45 45 H 1.08992 * 109.88350 * 120.70374 * 17 5 4 46 46 H 1.09001 * 109.88392 * 241.71801 * 17 5 4 47 47 H 0.96998 * 119.99691 * 93.54361 * 20 18 17 48 48 H 0.97000 * 119.99955 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 6 2.0909 -0.8071 -1.2002 5 7 2.0139 -2.2159 -0.7730 6 6 1.9472 -3.2830 -1.5937 7 8 1.9421 -3.1240 -2.7959 8 6 1.8788 -4.6737 -1.0172 9 1 1.2223 -4.6824 -0.1471 10 6 3.2909 -5.1482 -0.6140 11 6 3.7327 -5.9998 -1.8335 12 6 2.3918 -6.6572 -2.2533 13 7 1.3764 -5.6115 -2.0319 14 6 0.1828 -5.5316 -2.6528 15 7 -0.1632 -6.4572 -3.5694 16 8 -0.5817 -4.6247 -2.3861 17 6 2.0285 -2.2646 0.6963 18 6 2.0861 -0.8079 1.2024 19 1 1.4522 -0.6790 2.0798 20 7 3.4662 -0.4168 1.5004 21 6 4.0021 -0.6820 2.7323 22 1 3.4074 -1.1791 3.4842 23 6 5.3099 -0.3119 3.0144 24 7 6.0349 0.2934 2.0978 25 14 6.0409 -0.6731 4.6951 26 1 6.6858 -2.0106 4.6774 27 1 7.0541 0.3606 5.0268 28 1 4.9638 -0.6566 5.7173 29 1 -0.3634 0.4521 0.9228 30 1 -0.3633 0.5731 -0.8530 31 1 -0.3633 -1.0253 -0.0698 32 1 3.1636 1.4026 -0.0699 33 1 1.6705 1.9731 -0.8531 34 1 1.7836 1.9301 0.9227 35 1 3.1254 -0.5267 -1.3986 36 1 1.4765 -0.6451 -2.0859 37 1 3.9585 -4.2979 -0.4752 38 1 3.2501 -5.7561 0.2898 39 1 4.1277 -5.3677 -2.6287 40 1 4.4615 -6.7551 -1.5391 41 1 2.1821 -7.5273 -1.6312 42 1 2.4217 -6.9403 -3.3054 43 1 0.4466 -7.1810 -3.7819 44 1 -1.0239 -6.4020 -4.0133 45 1 1.1218 -2.7478 1.0602 46 1 2.9048 -2.8139 1.0404 47 1 4.0002 0.0300 0.8250 48 1 6.9489 0.5517 2.2948 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996724378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:13 Heat of formation + Delta-G solvation = -68.012864 kcal Electronic energy + Delta-G solvation = -29674.054196 eV Core-core repulsion = 25763.284527 eV Total energy + Delta-G solvation = -3910.769669 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.95257 -40.79793 -39.28565 -38.02133 -35.70268 -34.87087 -34.53749 -32.58627 -32.18263 -30.68721 -29.43941 -28.05411 -27.38253 -25.71490 -24.96145 -23.32857 -22.47694 -21.64682 -20.37350 -20.02574 -19.10436 -19.00645 -18.35171 -17.77118 -17.29969 -16.71712 -16.44645 -16.16958 -15.76814 -15.69885 -15.51910 -15.31504 -14.86830 -14.55385 -14.35101 -14.05956 -14.02362 -13.82561 -13.71801 -13.39089 -13.24551 -13.04579 -12.84150 -12.75515 -12.70651 -12.36913 -12.26556 -12.14391 -12.08404 -12.04259 -11.80915 -11.47580 -11.45138 -11.29122 -11.00142 -10.86376 -10.72909 -9.68404 -9.60942 -8.98049 -7.88100 -5.16733 1.46029 1.53169 1.54093 1.62066 1.67680 2.01387 2.25526 2.60828 3.26704 3.34824 3.42824 3.52705 3.58275 3.71897 3.79759 3.87461 3.98615 4.05069 4.22027 4.30169 4.42329 4.44185 4.57471 4.61674 4.65272 4.76003 4.77561 4.81518 4.85908 4.88114 4.98956 5.00000 5.04318 5.08346 5.11492 5.23231 5.27848 5.33047 5.36923 5.54649 5.61500 5.87099 5.96851 6.32258 6.56715 6.90581 7.13248 7.40419 7.59853 8.12793 8.37850 9.35087 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.004069 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.556357 B = 6879.317053 C = 8168.479897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.077 4.077 3 C -0.118 4.118 4 C 0.123 3.877 5 N -0.605 5.605 6 C 0.517 3.483 7 O -0.581 6.581 8 C 0.143 3.857 9 H 0.096 0.904 10 C -0.117 4.117 11 C -0.126 4.126 12 C 0.098 3.902 13 N -0.621 5.621 14 C 0.718 3.282 15 N -0.842 5.842 16 O -0.641 6.641 17 C 0.081 3.919 18 C 0.173 3.827 19 H 0.079 0.921 20 N -0.721 5.721 21 C -0.234 4.234 22 H 0.083 0.917 23 C -0.069 4.069 24 N -0.968 5.968 25 Si 0.967 3.033 26 H -0.288 1.288 27 H -0.304 1.304 28 H -0.268 1.268 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.120 0.880 39 H 0.056 0.944 40 H 0.124 0.876 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.413 0.587 44 H 0.421 0.579 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.375 0.625 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.365 -15.962 -7.125 19.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.078 4.078 3 C -0.175 4.175 4 C 0.000 4.000 5 N -0.337 5.337 6 C 0.305 3.695 7 O -0.462 6.462 8 C 0.034 3.966 9 H 0.114 0.886 10 C -0.155 4.155 11 C -0.164 4.164 12 C -0.023 4.023 13 N -0.359 5.359 14 C 0.418 3.582 15 N -0.412 5.412 16 O -0.522 6.522 17 C -0.044 4.044 18 C 0.063 3.937 19 H 0.096 0.904 20 N -0.360 5.360 21 C -0.366 4.366 22 H 0.101 0.899 23 C -0.262 4.262 24 N -0.619 5.619 25 Si 0.797 3.203 26 H -0.216 1.216 27 H -0.231 1.231 28 H -0.193 1.193 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.138 0.862 39 H 0.074 0.926 40 H 0.142 0.858 41 H 0.124 0.876 42 H 0.111 0.889 43 H 0.244 0.756 44 H 0.254 0.746 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.209 0.791 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.815 -15.375 -7.379 19.677 hybrid contribution 0.913 0.219 0.107 0.945 sum -8.902 -15.156 -7.272 19.022 Atomic orbital electron populations 1.21612 0.91813 1.01602 1.02879 1.21992 0.96718 0.95443 0.93673 1.21491 1.00192 0.93880 1.01978 1.22215 0.99465 0.80767 0.97556 1.48440 1.71439 1.05900 1.07959 1.21105 0.75137 0.87148 0.86075 1.90598 1.52478 1.86725 1.16351 1.21363 0.98982 0.85446 0.90818 0.88648 1.22661 0.90778 1.01127 1.00984 1.22842 0.97339 0.99675 0.96495 1.22706 0.86033 0.90327 1.03188 1.47357 1.16553 1.28833 1.43140 1.15691 0.80749 0.82203 0.79592 1.42663 1.24341 1.30331 1.43877 1.90930 1.53528 1.38059 1.69676 1.23104 1.01297 1.01704 0.78310 1.21409 0.86630 0.90206 0.95494 0.90358 1.42576 1.09777 1.70030 1.13642 1.19623 0.95347 1.30296 0.91319 0.89946 1.25445 0.97659 1.02124 1.00944 1.69820 1.09289 1.47696 1.35106 0.85235 0.77968 0.76615 0.80489 1.21568 1.23088 1.19301 0.90683 0.91723 0.93509 0.94039 0.91446 0.92096 0.93450 0.92026 0.91433 0.86185 0.92556 0.85783 0.87579 0.88920 0.75593 0.74584 0.90593 0.91393 0.79135 0.94293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.39 8.59 71.98 0.62 -2.77 16 2 C -0.08 -2.52 0.84 -50.71 -0.04 -2.57 16 3 C -0.12 -3.87 8.22 71.98 0.59 -3.28 16 4 C 0.12 4.55 5.83 86.93 0.51 5.06 16 5 N -0.60 -22.10 3.31 -811.38 -2.69 -24.79 16 6 C 0.52 19.42 6.21 87.66 0.54 19.97 16 7 O -0.58 -25.97 16.21 -3.01 -0.05 -26.02 16 8 C 0.14 4.06 2.68 44.60 0.12 4.18 16 9 H 0.10 2.66 7.51 -2.39 -0.02 2.64 16 10 C -0.12 -2.56 6.43 31.79 0.20 -2.35 16 11 C -0.13 -2.09 7.10 32.07 0.23 -1.86 16 12 C 0.10 1.42 6.59 86.93 0.57 1.99 16 13 N -0.62 -15.64 2.79 -809.58 -2.26 -17.90 16 14 C 0.72 20.95 8.10 179.05 1.45 22.40 16 15 N -0.84 -14.69 8.83 -184.75 -1.63 -16.33 16 16 O -0.64 -25.71 16.80 -3.98 -0.07 -25.78 16 17 C 0.08 2.76 5.72 86.73 0.50 3.26 16 18 C 0.17 6.35 2.86 46.18 0.13 6.48 16 19 H 0.08 2.77 8.02 -2.38 -0.02 2.75 16 20 N -0.72 -33.34 4.62 -317.31 -1.47 -34.80 16 21 C -0.23 -11.90 9.98 84.03 0.84 -11.06 16 22 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 23 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 24 N -0.97 -56.92 13.06 21.65 0.28 -56.63 16 25 Si 0.97 43.81 29.55 68.60 2.03 45.84 16 26 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 27 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 1.39 7.91 -2.39 -0.02 1.37 16 32 H 0.04 1.59 6.39 -2.39 -0.02 1.58 16 33 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.05 1.92 7.99 -2.39 -0.02 1.90 16 36 H 0.06 2.33 7.95 -2.39 -0.02 2.32 16 37 H 0.07 1.86 7.71 -2.39 -0.02 1.84 16 38 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 40 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.09 0.98 7.29 -2.39 -0.02 0.96 16 43 H 0.41 4.04 7.30 -92.71 -0.68 3.37 16 44 H 0.42 6.32 8.93 -92.70 -0.83 5.49 16 45 H 0.08 2.26 7.87 -2.39 -0.02 2.24 16 46 H 0.07 2.46 7.87 -2.39 -0.02 2.44 16 47 H 0.37 19.18 6.11 -92.71 -0.57 18.62 16 48 H 0.25 14.35 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -78.96 381.24 -0.20 -79.16 By element: Atomic # 1 Polarization: 42.17 SS G_CDS: -1.08 Total: 41.09 kcal Atomic # 6 Polarization: 29.43 SS G_CDS: 6.73 Total: 36.16 kcal Atomic # 7 Polarization: -142.69 SS G_CDS: -7.76 Total: -150.45 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -0.12 Total: -51.79 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -78.96 -0.20 -79.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996724378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.152 kcal (2) G-P(sol) polarization free energy of solvation -78.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds