Wall clock time and date at job start Fri Apr 10 2020 18:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99972 * 2 1 4 4 H 1.48500 * 109.47388 * 270.81440 * 3 2 1 5 5 H 1.48500 * 109.46928 * 30.81223 * 3 2 1 6 6 H 1.48504 * 109.47309 * 150.81416 * 3 2 1 7 7 C 1.38810 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00208 * 345.15793 * 7 2 1 9 9 N 1.36942 * 120.00423 * 165.15873 * 7 2 1 10 10 C 1.46928 * 120.62635 * 328.50741 * 9 7 2 11 11 C 1.53190 * 108.77638 * 233.58228 * 10 9 7 12 12 C 1.53039 * 109.31302 * 305.36833 * 11 10 9 13 13 N 1.46505 * 109.46054 * 181.38010 * 12 11 10 14 14 C 1.34773 * 119.99931 * 154.97117 * 13 12 11 15 15 O 1.21283 * 119.99848 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99942 * 180.02562 * 14 13 12 17 17 H 1.09004 * 109.49956 * 60.06956 * 16 14 13 18 18 C 1.53039 * 109.52618 * 180.14427 * 16 14 13 19 19 C 1.53035 * 109.54049 * 181.33349 * 18 16 14 20 20 C 1.53633 * 109.24338 * 298.51382 * 19 18 16 21 21 N 1.46921 * 108.54022 * 54.85412 * 20 19 18 22 22 C 1.34779 * 120.62714 * 126.37167 * 21 20 19 23 23 N 1.34777 * 120.00247 * 355.14394 * 22 21 20 24 24 O 1.21586 * 119.99764 * 174.87312 * 22 21 20 25 25 C 1.46924 * 118.73934 * 306.09480 * 21 20 19 26 26 C 1.53043 * 109.52781 * 61.37151 * 12 11 10 27 27 C 1.46917 * 120.63454 * 148.48291 * 9 7 2 28 28 H 0.96997 * 120.00296 * 359.97438 * 1 2 3 29 29 H 1.09009 * 109.58652 * 113.79969 * 10 9 7 30 30 H 1.09005 * 109.59011 * 353.37619 * 10 9 7 31 31 H 1.09004 * 109.50169 * 185.41461 * 11 10 9 32 32 H 1.09004 * 109.49653 * 65.31816 * 11 10 9 33 33 H 1.08997 * 109.46400 * 301.35746 * 12 11 10 34 34 H 0.96998 * 119.99491 * 334.97994 * 13 12 11 35 35 H 1.08997 * 109.46250 * 301.35622 * 18 16 14 36 36 H 1.09006 * 109.45562 * 61.31365 * 18 16 14 37 37 H 1.09001 * 109.50205 * 58.58809 * 19 18 16 38 38 H 1.08998 * 109.50012 * 178.65453 * 19 18 16 39 39 H 1.08998 * 109.73686 * 295.11536 * 20 19 18 40 40 H 1.08997 * 109.66126 * 174.55170 * 20 19 18 41 41 H 0.96997 * 119.99720 * 4.76191 * 23 22 21 42 42 H 0.96996 * 120.00098 * 184.75646 * 23 22 21 43 43 H 1.09007 * 109.58815 * 173.64728 * 25 21 20 44 44 H 1.08990 * 109.58906 * 293.92838 * 25 21 20 45 45 H 1.09003 * 109.49922 * 58.57369 * 26 12 11 46 46 H 1.08998 * 109.49869 * 178.67590 * 26 12 11 47 47 H 1.09004 * 109.59328 * 246.20497 * 27 9 7 48 48 H 1.09006 * 109.58540 * 6.48396 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4805 2.0564 -1.3999 5 1 1.4563 2.6476 0.7172 6 1 3.5563 1.4353 0.6827 7 6 2.0103 -1.2021 -0.0005 8 1 1.4974 -2.1219 0.2386 9 7 3.3454 -1.2218 -0.3043 10 6 3.9132 -0.2477 -1.2464 11 6 4.6703 -1.0048 -2.3419 12 6 5.7038 -1.9303 -1.6958 13 7 6.4525 -2.6317 -2.7417 14 6 7.6952 -3.0882 -2.4899 15 8 8.1937 -2.9188 -1.3973 16 6 8.4655 -3.8091 -3.5660 17 1 8.5976 -3.1490 -4.4233 18 6 9.8358 -4.2228 -3.0243 19 6 10.6312 -4.9255 -4.1268 20 6 9.8810 -6.1935 -4.5626 21 7 8.5147 -5.8178 -4.9506 22 6 8.0226 -6.1670 -6.1558 23 7 8.8161 -6.7813 -7.0555 24 8 6.8614 -5.9324 -6.4295 25 6 7.6929 -5.0595 -3.9976 26 6 4.9907 -2.9521 -0.8071 27 6 4.2375 -2.2169 0.3060 28 1 -0.4850 0.8400 0.0004 29 1 4.5998 0.4141 -0.7183 30 1 3.1104 0.3378 -1.6948 31 1 5.1768 -0.2923 -2.9932 32 1 3.9671 -1.5972 -2.9273 33 1 6.3917 -1.3401 -1.0905 34 1 6.0536 -2.7673 -3.6155 35 1 10.3781 -3.3370 -2.6936 36 1 9.7033 -4.9025 -2.1825 37 1 10.7427 -4.2550 -4.9788 38 1 11.6158 -5.1986 -3.7474 39 1 9.8442 -6.9021 -3.7352 40 1 10.3907 -6.6472 -5.4125 41 1 9.7203 -7.0341 -6.8118 42 1 8.4830 -6.9706 -7.9466 43 1 6.7581 -4.7647 -4.4747 44 1 7.4790 -5.6783 -3.1263 45 1 4.2843 -3.5259 -1.4071 46 1 5.7252 -3.6257 -0.3657 47 1 4.9505 -1.7159 0.9607 48 1 3.6489 -2.9294 0.8841 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003271577.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:37 Heat of formation + Delta-G solvation = -44.477165 kcal Electronic energy + Delta-G solvation = -28518.369745 eV Core-core repulsion = 24608.620660 eV Total energy + Delta-G solvation = -3909.749085 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.94524 -39.82626 -37.98324 -37.13057 -34.60011 -34.37815 -32.72677 -32.37340 -31.50135 -30.41093 -29.84286 -25.86461 -25.32323 -24.17472 -22.92705 -22.24199 -21.50924 -20.37007 -19.83958 -19.53943 -18.85607 -17.48039 -17.11344 -16.59158 -16.13760 -15.77874 -15.33695 -15.29783 -15.01908 -14.71498 -14.16080 -14.10723 -13.97594 -13.77446 -13.69415 -13.45795 -13.11434 -13.01120 -12.81413 -12.35000 -12.01174 -11.88872 -11.76568 -11.46742 -11.35329 -11.03076 -10.95652 -10.84298 -10.55946 -10.52383 -10.27168 -10.11791 -10.07866 -9.87358 -9.62833 -9.47824 -9.03532 -8.81774 -8.62566 -6.91410 -5.92523 -3.34779 2.27310 2.66699 2.84422 3.21842 3.31807 3.49002 3.51898 3.66098 4.26655 4.32662 4.44983 4.53411 4.56627 4.71127 4.85516 4.97595 5.00503 5.13119 5.23196 5.26768 5.33570 5.38509 5.41554 5.43195 5.52839 5.68229 5.77814 5.84228 5.93417 5.97489 6.05955 6.11579 6.18867 6.33283 6.34432 6.41587 6.51924 6.58237 6.66785 6.67926 6.74954 6.94052 7.43130 7.59034 8.01874 8.22927 8.26359 8.36430 8.95762 9.72826 10.11858 11.23619 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.022482 B = 0.002721 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.131485 B =10289.380682 C =10881.864137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.023 3.977 3 Si 0.889 3.111 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.269 1.269 7 C -0.260 4.260 8 H 0.085 0.915 9 N -0.607 5.607 10 C 0.127 3.873 11 C -0.141 4.141 12 C 0.150 3.850 13 N -0.722 5.722 14 C 0.518 3.482 15 O -0.538 6.538 16 C -0.123 4.123 17 H 0.099 0.901 18 C -0.099 4.099 19 C -0.135 4.135 20 C 0.109 3.891 21 N -0.627 5.627 22 C 0.709 3.291 23 N -0.869 5.869 24 O -0.588 6.588 25 C 0.139 3.861 26 C -0.141 4.141 27 C 0.151 3.849 28 H 0.263 0.737 29 H 0.028 0.972 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.398 0.602 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.395 0.605 42 H 0.414 0.586 43 H 0.100 0.900 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.025 0.975 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.860 -12.844 -13.226 30.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.176 4.176 3 Si 0.720 3.280 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.194 1.194 7 C -0.388 4.388 8 H 0.103 0.897 9 N -0.331 5.331 10 C 0.001 3.999 11 C -0.181 4.181 12 C 0.047 3.953 13 N -0.372 5.372 14 C 0.303 3.697 15 O -0.414 6.414 16 C -0.146 4.146 17 H 0.117 0.883 18 C -0.137 4.137 19 C -0.173 4.173 20 C -0.015 4.015 21 N -0.365 5.365 22 C 0.409 3.591 23 N -0.439 5.439 24 O -0.466 6.466 25 C 0.015 3.985 26 C -0.181 4.181 27 C 0.025 3.975 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.232 0.768 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.226 0.774 42 H 0.246 0.754 43 H 0.118 0.882 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.043 0.957 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 24.240 -12.401 -12.427 29.930 hybrid contribution 0.602 0.713 -0.810 1.236 sum 24.843 -11.688 -13.237 30.479 Atomic orbital electron populations 1.69780 1.05710 1.26545 1.53564 1.25388 0.95298 0.97732 0.99141 0.86877 0.79803 0.84240 0.77090 1.21580 1.23212 1.19381 1.18929 0.82322 0.94231 1.43319 0.89747 1.44374 1.05830 1.35499 1.47405 1.21361 0.96368 0.92163 0.90013 1.22350 0.97535 0.98678 0.99534 1.21004 0.92579 0.93211 0.88542 1.46360 1.15857 1.58249 1.16749 1.20306 0.81655 0.79028 0.88701 1.90708 1.68869 1.57362 1.24502 1.21752 0.96791 0.97594 0.98424 0.88269 1.21321 0.93298 1.01527 0.97598 1.22034 0.99041 0.96823 0.99423 1.21809 0.81833 0.97256 1.00556 1.47204 1.15186 1.58787 1.15338 1.15853 0.84597 0.78403 0.80293 1.43164 1.17738 1.66610 1.16397 1.90998 1.15705 1.61319 1.78552 1.21392 0.94010 0.90823 0.92233 1.22379 0.98976 0.98026 0.98726 1.20900 0.92317 0.91659 0.92646 0.92743 0.95383 0.90591 0.92291 0.91078 0.89918 0.76760 0.90552 0.90717 0.91284 0.90112 0.90782 0.90386 0.77422 0.75392 0.88169 0.90763 0.91775 0.92302 0.95748 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.22 13.97 55.49 0.78 -27.45 16 2 C 0.02 0.68 5.31 -17.43 -0.09 0.58 16 3 Si 0.89 22.60 24.29 -169.99 -4.13 18.48 16 4 H -0.29 -7.01 6.62 56.52 0.37 -6.63 16 5 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 6 H -0.27 -6.72 6.44 56.52 0.36 -6.35 16 7 C -0.26 -7.30 10.04 -15.06 -0.15 -7.46 16 8 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 9 N -0.61 -14.51 2.74 -172.32 -0.47 -14.98 16 10 C 0.13 2.75 4.16 -3.71 -0.02 2.74 16 11 C -0.14 -2.41 5.55 -26.61 -0.15 -2.56 16 12 C 0.15 2.42 2.42 -67.89 -0.16 2.26 16 13 N -0.72 -9.33 4.98 -53.76 -0.27 -9.60 16 14 C 0.52 6.67 7.12 -10.99 -0.08 6.59 16 15 O -0.54 -8.86 15.65 5.55 0.09 -8.77 16 16 C -0.12 -1.13 2.67 -91.66 -0.25 -1.38 16 17 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 18 C -0.10 -0.79 4.46 -26.69 -0.12 -0.91 16 19 C -0.13 -0.67 6.10 -26.38 -0.16 -0.83 16 20 C 0.11 0.51 6.46 -3.48 -0.02 0.49 16 21 N -0.63 -5.03 2.97 -178.24 -0.53 -5.56 16 22 C 0.71 6.97 8.57 -86.92 -0.75 6.22 16 23 N -0.87 -4.65 8.79 27.63 0.24 -4.41 16 24 O -0.59 -8.60 16.61 5.29 0.09 -8.51 16 25 C 0.14 1.30 5.55 -3.71 -0.02 1.28 16 26 C -0.14 -2.43 5.65 -26.61 -0.15 -2.58 16 27 C 0.15 3.08 6.52 -3.71 -0.02 3.05 16 28 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.03 0.61 6.86 -51.92 -0.36 0.25 16 30 H 0.08 1.79 4.60 -51.93 -0.24 1.55 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 34 H 0.40 4.37 8.14 -40.82 -0.33 4.04 16 35 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 36 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.16 5.57 -51.93 -0.29 -0.12 16 41 H 0.40 0.93 6.29 -40.82 -0.26 0.68 16 42 H 0.41 1.85 8.93 -40.82 -0.36 1.48 16 43 H 0.10 1.08 6.63 -51.93 -0.34 0.73 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -36.14 367.24 -8.49 -44.62 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.68 Total: 3.14 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -2.14 Total: 7.50 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.25 Total: -61.99 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.17 Total: -17.28 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.13 Total: 18.48 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.14 -8.49 -44.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003271577.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.144 kcal (2) G-P(sol) polarization free energy of solvation -36.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds