Wall clock time and date at job start Fri Apr 10 2020 18:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99972 * 2 1 4 4 H 1.48500 * 109.47388 * 270.81440 * 3 2 1 5 5 H 1.48500 * 109.46928 * 30.81223 * 3 2 1 6 6 H 1.48504 * 109.47309 * 150.81416 * 3 2 1 7 7 C 1.38810 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00208 * 345.15793 * 7 2 1 9 9 N 1.36942 * 120.00423 * 165.15873 * 7 2 1 10 10 C 1.46928 * 120.62635 * 328.50741 * 9 7 2 11 11 C 1.53190 * 108.77638 * 233.58228 * 10 9 7 12 12 C 1.53039 * 109.31302 * 305.36833 * 11 10 9 13 13 N 1.46505 * 109.46054 * 181.38010 * 12 11 10 14 14 C 1.34773 * 119.99931 * 154.97117 * 13 12 11 15 15 O 1.21283 * 119.99848 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99942 * 180.02562 * 14 13 12 17 17 H 1.09004 * 109.49956 * 60.06956 * 16 14 13 18 18 C 1.53039 * 109.52618 * 180.14427 * 16 14 13 19 19 C 1.53035 * 109.54049 * 181.33349 * 18 16 14 20 20 C 1.53633 * 109.24338 * 298.51382 * 19 18 16 21 21 N 1.46921 * 108.54022 * 54.85412 * 20 19 18 22 22 C 1.34779 * 120.62714 * 126.37167 * 21 20 19 23 23 N 1.34777 * 120.00247 * 355.14394 * 22 21 20 24 24 O 1.21586 * 119.99764 * 174.87312 * 22 21 20 25 25 C 1.46924 * 118.73934 * 306.09480 * 21 20 19 26 26 C 1.53043 * 109.52781 * 61.37151 * 12 11 10 27 27 C 1.46917 * 120.63454 * 148.48291 * 9 7 2 28 28 H 0.96997 * 120.00296 * 359.97438 * 1 2 3 29 29 H 1.09009 * 109.58652 * 113.79969 * 10 9 7 30 30 H 1.09005 * 109.59011 * 353.37619 * 10 9 7 31 31 H 1.09004 * 109.50169 * 185.41461 * 11 10 9 32 32 H 1.09004 * 109.49653 * 65.31816 * 11 10 9 33 33 H 1.08997 * 109.46400 * 301.35746 * 12 11 10 34 34 H 0.96998 * 119.99491 * 334.97994 * 13 12 11 35 35 H 1.08997 * 109.46250 * 301.35622 * 18 16 14 36 36 H 1.09006 * 109.45562 * 61.31365 * 18 16 14 37 37 H 1.09001 * 109.50205 * 58.58809 * 19 18 16 38 38 H 1.08998 * 109.50012 * 178.65453 * 19 18 16 39 39 H 1.08998 * 109.73686 * 295.11536 * 20 19 18 40 40 H 1.08997 * 109.66126 * 174.55170 * 20 19 18 41 41 H 0.96997 * 119.99720 * 4.76191 * 23 22 21 42 42 H 0.96996 * 120.00098 * 184.75646 * 23 22 21 43 43 H 1.09007 * 109.58815 * 173.64728 * 25 21 20 44 44 H 1.08990 * 109.58906 * 293.92838 * 25 21 20 45 45 H 1.09003 * 109.49922 * 58.57369 * 26 12 11 46 46 H 1.08998 * 109.49869 * 178.67590 * 26 12 11 47 47 H 1.09004 * 109.59328 * 246.20497 * 27 9 7 48 48 H 1.09006 * 109.58540 * 6.48396 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4805 2.0564 -1.3999 5 1 1.4563 2.6476 0.7172 6 1 3.5563 1.4353 0.6827 7 6 2.0103 -1.2021 -0.0005 8 1 1.4974 -2.1219 0.2386 9 7 3.3454 -1.2218 -0.3043 10 6 3.9132 -0.2477 -1.2464 11 6 4.6703 -1.0048 -2.3419 12 6 5.7038 -1.9303 -1.6958 13 7 6.4525 -2.6317 -2.7417 14 6 7.6952 -3.0882 -2.4899 15 8 8.1937 -2.9188 -1.3973 16 6 8.4655 -3.8091 -3.5660 17 1 8.5976 -3.1490 -4.4233 18 6 9.8358 -4.2228 -3.0243 19 6 10.6312 -4.9255 -4.1268 20 6 9.8810 -6.1935 -4.5626 21 7 8.5147 -5.8178 -4.9506 22 6 8.0226 -6.1670 -6.1558 23 7 8.8161 -6.7813 -7.0555 24 8 6.8614 -5.9324 -6.4295 25 6 7.6929 -5.0595 -3.9976 26 6 4.9907 -2.9521 -0.8071 27 6 4.2375 -2.2169 0.3060 28 1 -0.4850 0.8400 0.0004 29 1 4.5998 0.4141 -0.7183 30 1 3.1104 0.3378 -1.6948 31 1 5.1768 -0.2923 -2.9932 32 1 3.9671 -1.5972 -2.9273 33 1 6.3917 -1.3401 -1.0905 34 1 6.0536 -2.7673 -3.6155 35 1 10.3781 -3.3370 -2.6936 36 1 9.7033 -4.9025 -2.1825 37 1 10.7427 -4.2550 -4.9788 38 1 11.6158 -5.1986 -3.7474 39 1 9.8442 -6.9021 -3.7352 40 1 10.3907 -6.6472 -5.4125 41 1 9.7203 -7.0341 -6.8118 42 1 8.4830 -6.9706 -7.9466 43 1 6.7581 -4.7647 -4.4747 44 1 7.4790 -5.6783 -3.1263 45 1 4.2843 -3.5259 -1.4071 46 1 5.7252 -3.6257 -0.3657 47 1 4.9505 -1.7159 0.9607 48 1 3.6489 -2.9294 0.8841 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003271577.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:36 Heat of formation + Delta-G solvation = -73.243477 kcal Electronic energy + Delta-G solvation = -28519.617145 eV Core-core repulsion = 24608.620660 eV Total energy + Delta-G solvation = -3910.996486 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.72869 -40.83370 -39.34595 -38.04870 -36.08476 -35.08242 -34.11278 -33.33148 -32.57306 -31.99783 -31.26685 -27.04357 -26.37094 -25.25228 -24.47642 -23.52571 -22.52791 -21.36948 -21.10333 -20.48092 -19.47126 -18.92934 -18.09062 -17.71295 -17.56619 -16.85582 -16.51054 -16.16855 -15.96285 -15.87381 -15.40075 -15.37807 -15.17790 -14.99146 -14.65323 -14.49019 -14.34319 -14.18662 -14.10475 -13.80618 -13.59724 -13.43367 -12.63144 -12.56576 -12.53545 -12.26699 -12.03450 -12.00838 -11.96730 -11.78581 -11.67082 -11.55744 -11.39608 -11.33186 -10.91268 -10.70647 -10.67318 -10.05156 -9.65192 -8.91502 -8.16971 -5.56214 1.28915 1.41312 1.48293 1.50466 1.81329 2.11125 2.18393 2.40429 3.08204 3.21249 3.29066 3.59819 3.69009 3.77757 3.80579 3.97447 4.02503 4.11966 4.20494 4.24505 4.30416 4.46855 4.50048 4.54851 4.61892 4.67628 4.74899 4.75496 4.85866 4.90095 4.91201 5.00413 5.05097 5.05964 5.14962 5.18186 5.38684 5.39500 5.42795 5.50914 5.82375 5.88338 6.01826 6.12728 6.54369 6.90269 6.90283 7.22503 7.58866 7.60535 8.00867 9.03021 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.022482 B = 0.002721 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.131485 B =10289.380682 C =10881.864137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.034 4.034 3 Si 0.953 3.047 4 H -0.268 1.268 5 H -0.312 1.312 6 H -0.261 1.261 7 C -0.250 4.250 8 H 0.049 0.951 9 N -0.620 5.620 10 C 0.120 3.880 11 C -0.129 4.129 12 C 0.160 3.840 13 N -0.714 5.714 14 C 0.519 3.481 15 O -0.573 6.573 16 C -0.109 4.109 17 H 0.112 0.888 18 C -0.099 4.099 19 C -0.125 4.125 20 C 0.103 3.897 21 N -0.624 5.624 22 C 0.702 3.298 23 N -0.847 5.847 24 O -0.643 6.643 25 C 0.142 3.858 26 C -0.128 4.128 27 C 0.148 3.852 28 H 0.262 0.738 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.410 0.590 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.110 0.890 41 H 0.412 0.588 42 H 0.420 0.580 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.030 0.970 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.609 -13.249 -15.065 34.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.229 4.229 3 Si 0.782 3.218 4 H -0.195 1.195 5 H -0.241 1.241 6 H -0.185 1.185 7 C -0.380 4.380 8 H 0.067 0.933 9 N -0.345 5.345 10 C -0.006 4.006 11 C -0.169 4.169 12 C 0.055 3.945 13 N -0.365 5.365 14 C 0.306 3.694 15 O -0.452 6.452 16 C -0.131 4.131 17 H 0.130 0.870 18 C -0.137 4.137 19 C -0.164 4.164 20 C -0.019 4.019 21 N -0.361 5.361 22 C 0.401 3.599 23 N -0.419 5.419 24 O -0.525 6.525 25 C 0.017 3.983 26 C -0.168 4.168 27 C 0.022 3.978 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.246 0.754 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.122 0.878 39 H 0.099 0.901 40 H 0.128 0.872 41 H 0.246 0.754 42 H 0.253 0.747 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.049 0.951 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 28.097 -12.853 -14.311 34.051 hybrid contribution -0.518 0.710 -0.206 0.903 sum 27.579 -12.143 -14.516 33.448 Atomic orbital electron populations 1.69920 1.07446 1.27313 1.56006 1.26041 0.95931 1.01227 0.99706 0.85838 0.78396 0.79615 0.77985 1.19471 1.24065 1.18535 1.18841 0.84221 0.92984 1.41938 0.93294 1.44477 1.04756 1.36655 1.48636 1.21423 0.96186 0.92186 0.90775 1.22171 0.97438 0.99030 0.98245 1.20676 0.92176 0.92721 0.88944 1.46175 1.15876 1.57863 1.16550 1.20913 0.81283 0.78283 0.88955 1.90696 1.69585 1.58685 1.26231 1.21677 0.96813 0.97208 0.97380 0.87003 1.21336 0.92687 1.01255 0.98457 1.21996 0.99451 0.96521 0.98385 1.22101 0.80049 0.97494 1.02207 1.47201 1.16233 1.58134 1.14543 1.16103 0.84241 0.78521 0.81006 1.42953 1.18010 1.65054 1.15847 1.90962 1.18268 1.63588 1.79692 1.21225 0.93822 0.91002 0.92222 1.22198 0.98703 0.98004 0.97875 1.21009 0.91964 0.91052 0.93752 0.92864 0.94744 0.92433 0.89273 0.91236 0.90973 0.75352 0.91517 0.91752 0.90795 0.87835 0.90088 0.87231 0.75407 0.74695 0.89743 0.91267 0.92188 0.91453 0.95149 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.25 13.97 21.65 0.30 -60.95 16 2 C -0.03 -2.04 5.31 84.86 0.45 -1.59 16 3 Si 0.95 47.08 24.29 68.60 1.67 48.74 16 4 H -0.27 -12.30 6.62 99.48 0.66 -11.64 16 5 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 6 H -0.26 -12.39 6.44 99.48 0.64 -11.75 16 7 C -0.25 -14.46 10.04 84.03 0.84 -13.62 16 8 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 9 N -0.62 -29.67 2.74 -699.08 -1.91 -31.59 16 10 C 0.12 5.01 4.16 86.36 0.36 5.37 16 11 C -0.13 -4.16 5.55 30.67 0.17 -3.99 16 12 C 0.16 4.88 2.42 45.02 0.11 4.99 16 13 N -0.71 -17.19 4.98 -442.40 -2.20 -19.39 16 14 C 0.52 12.55 7.12 87.66 0.62 13.17 16 15 O -0.57 -18.21 15.65 -3.04 -0.05 -18.26 16 16 C -0.11 -1.79 2.67 -11.46 -0.03 -1.82 16 17 H 0.11 1.61 8.14 -2.38 -0.02 1.60 16 18 C -0.10 -1.36 4.46 30.62 0.14 -1.22 16 19 C -0.13 -0.78 6.10 30.82 0.19 -0.59 16 20 C 0.10 0.60 6.46 86.51 0.56 1.15 16 21 N -0.62 -8.58 2.97 -836.07 -2.48 -11.06 16 22 C 0.70 12.50 8.57 179.05 1.53 14.03 16 23 N -0.85 -6.70 8.79 -184.75 -1.62 -8.32 16 24 O -0.64 -18.47 16.61 -3.99 -0.07 -18.54 16 25 C 0.14 2.46 5.55 86.36 0.48 2.94 16 26 C -0.13 -4.30 5.65 30.67 0.17 -4.13 16 27 C 0.15 6.00 6.52 86.36 0.56 6.56 16 28 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 29 H 0.03 1.41 6.86 -2.38 -0.02 1.40 16 30 H 0.06 2.63 4.60 -2.38 -0.01 2.62 16 31 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 32 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.07 2.43 7.58 -2.39 -0.02 2.41 16 34 H 0.41 8.22 8.14 -92.71 -0.75 7.46 16 35 H 0.07 1.06 8.07 -2.39 -0.02 1.04 16 36 H 0.06 1.02 8.13 -2.38 -0.02 1.01 16 37 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.11 -0.06 5.57 -2.39 -0.01 -0.07 16 41 H 0.41 0.33 6.29 -92.71 -0.58 -0.25 16 42 H 0.42 2.73 8.93 -92.71 -0.83 1.91 16 43 H 0.08 1.76 6.63 -2.38 -0.02 1.75 16 44 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 48 H 0.06 2.39 7.93 -2.38 -0.02 2.37 16 Total: -1.00 -81.27 367.24 -1.48 -82.75 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -1.28 Total: 15.35 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: 6.16 Total: 21.25 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -7.92 Total: -131.30 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -0.11 Total: -36.80 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.67 Total: 48.74 kcal Total: -81.27 -1.48 -82.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003271577.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.506 kcal (2) G-P(sol) polarization free energy of solvation -81.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds