Wall clock time and date at job start Fri Apr 10 2020 18:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99887 * 2 1 4 4 H 1.48500 * 109.47117 * 240.00328 * 3 2 1 5 5 H 1.48504 * 109.47037 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47155 * 120.00001 * 3 2 1 7 7 C 1.38807 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00003 * 168.42250 * 7 2 1 9 9 N 1.36936 * 120.00389 * 348.43084 * 7 2 1 10 10 C 1.46934 * 120.62792 * 323.13657 * 9 7 2 11 11 C 1.53191 * 108.77354 * 233.58749 * 10 9 7 12 12 C 1.53041 * 109.30982 * 305.36288 * 11 10 9 13 13 N 1.46501 * 109.45897 * 181.38950 * 12 11 10 14 14 C 1.34780 * 120.00225 * 154.97472 * 13 12 11 15 15 O 1.21289 * 119.99718 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00345 * 179.97438 * 14 13 12 17 17 C 1.53043 * 109.46306 * 179.97438 * 16 14 13 18 18 C 1.53193 * 109.31237 * 178.62526 * 17 16 14 19 19 N 1.46932 * 108.89158 * 54.56522 * 18 17 16 20 20 C 1.34776 * 120.62867 * 126.45918 * 19 18 17 21 21 N 1.34778 * 119.99732 * 184.71127 * 20 19 18 22 22 O 1.21588 * 119.99923 * 4.71865 * 20 19 18 23 23 C 1.46959 * 118.71191 * 306.63597 * 19 18 17 24 24 C 1.53043 * 109.45116 * 59.93229 * 16 14 13 25 25 C 1.53037 * 109.52916 * 61.37427 * 12 11 10 26 26 C 1.46917 * 120.63498 * 143.10830 * 9 7 2 27 27 H 0.97004 * 119.99921 * 359.97438 * 1 2 3 28 28 H 1.08992 * 109.58594 * 113.79896 * 10 9 7 29 29 H 1.09000 * 109.69902 * 353.43859 * 10 9 7 30 30 H 1.08999 * 109.50034 * 185.41239 * 11 10 9 31 31 H 1.09001 * 109.50117 * 65.30527 * 11 10 9 32 32 H 1.09000 * 109.46324 * 301.35551 * 12 11 10 33 33 H 0.96997 * 120.00274 * 334.96448 * 13 12 11 34 34 H 1.09005 * 109.45944 * 299.97076 * 16 14 13 35 35 H 1.08999 * 109.49260 * 58.67551 * 17 16 14 36 36 H 1.08994 * 109.51914 * 298.59438 * 17 16 14 37 37 H 1.08996 * 109.58648 * 174.42081 * 18 17 16 38 38 H 1.09003 * 109.58650 * 294.70585 * 18 17 16 39 39 H 0.97001 * 119.99822 * 355.23745 * 21 20 19 40 40 H 0.96999 * 119.99872 * 175.23777 * 21 20 19 41 41 H 1.08994 * 109.46864 * 293.57021 * 23 19 18 42 42 H 1.09008 * 109.70636 * 173.28712 * 23 19 18 43 43 H 1.08997 * 109.49655 * 301.33662 * 24 16 14 44 44 H 1.08996 * 109.49573 * 61.42806 * 24 16 14 45 45 H 1.08994 * 109.49878 * 58.57919 * 25 12 11 46 46 H 1.09003 * 109.49741 * 178.67986 * 25 12 11 47 47 H 1.09001 * 109.59120 * 246.20179 * 26 9 7 48 48 H 1.09005 * 109.58962 * 6.48399 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0738 -1.2117 -0.1872 9 7 1.3466 -2.3759 0.2389 10 6 0.2483 -2.4303 1.2135 11 6 0.5383 -3.5469 2.2213 12 6 0.7767 -4.8582 1.4691 13 7 1.0216 -5.9353 2.4314 14 6 0.7626 -7.2138 2.0924 15 8 0.3262 -7.4725 0.9907 16 6 1.0151 -8.3218 3.0821 17 6 0.6401 -9.6646 2.4508 18 6 0.9303 -10.7914 3.4472 19 7 0.2341 -10.5023 4.7084 20 6 -0.5901 -11.4135 5.2623 21 7 -1.2951 -11.1006 6.3676 22 8 -0.6975 -12.5178 4.7651 23 6 0.4511 -9.1990 5.3519 24 6 0.1658 -8.0903 4.3340 25 6 1.9923 -4.7080 0.5516 26 6 1.7186 -3.6047 -0.4754 27 1 -0.4850 0.8401 0.0004 28 1 -0.6886 -2.6385 0.6969 29 1 0.1733 -1.4767 1.7362 30 1 -0.3132 -3.6619 2.8920 31 1 1.4264 -3.2930 2.8001 32 1 -0.1022 -5.0987 0.8710 33 1 1.3704 -5.7284 3.3126 34 1 2.0702 -8.3308 3.3557 35 1 1.2285 -9.8183 1.5463 36 1 -0.4205 -9.6653 2.1995 37 1 0.5738 -11.7384 3.0419 38 1 2.0035 -10.8521 3.6278 39 1 -1.1582 -10.2453 6.8042 40 1 -1.9395 -11.7306 6.7263 41 1 1.4849 -9.1282 5.6897 42 1 -0.2200 -9.0937 6.2044 43 1 0.4165 -7.1232 4.7699 44 1 -0.8903 -8.1057 4.0650 45 1 2.8664 -4.4430 1.1463 46 1 2.1757 -5.6494 0.0337 47 1 0.9015 -3.9087 -1.1297 48 1 2.6148 -3.4250 -1.0694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004116739.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:40 Heat of formation + Delta-G solvation = -80.503240 kcal Electronic energy + Delta-G solvation = -28110.918603 eV Core-core repulsion = 24199.607310 eV Total energy + Delta-G solvation = -3911.311292 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.62962 -40.81330 -39.12851 -37.97252 -35.98104 -35.02389 -34.10520 -33.35136 -31.91602 -31.70820 -31.09173 -27.54437 -26.44871 -24.31282 -24.04558 -23.72240 -22.71729 -21.32334 -20.96545 -20.39244 -19.43808 -18.79736 -17.96566 -17.76474 -17.20559 -16.74337 -16.44629 -16.21347 -15.84855 -15.53646 -15.36150 -15.33506 -15.17329 -14.81962 -14.59070 -14.42999 -14.23946 -14.05771 -13.77363 -13.37760 -13.19332 -12.98754 -12.85622 -12.63480 -12.54977 -12.27178 -12.20020 -12.04890 -11.90377 -11.81118 -11.64405 -11.56829 -11.34484 -11.27481 -10.73258 -10.66594 -10.57059 -9.96719 -9.58654 -8.58443 -7.88718 -5.45389 1.48674 1.49948 1.57252 1.69550 1.82622 2.12741 2.26457 2.50625 3.25634 3.28024 3.59006 3.67590 3.72809 3.81425 3.92976 4.05587 4.08559 4.32309 4.32986 4.34760 4.44764 4.47344 4.61248 4.65886 4.74186 4.82208 4.83389 4.85942 4.87049 4.98464 5.06732 5.08608 5.14460 5.17157 5.30915 5.31754 5.43361 5.51415 5.60196 5.65756 5.68069 5.87509 6.03065 6.42813 6.67758 6.93455 7.15878 7.36739 7.62842 7.81407 8.39668 9.17323 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.034679 B = 0.002213 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.214222 B =12648.339774 C =13023.391098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.042 4.042 3 Si 0.970 3.030 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.272 1.272 7 C -0.271 4.271 8 H 0.063 0.937 9 N -0.607 5.607 10 C 0.183 3.817 11 C -0.126 4.126 12 C 0.162 3.838 13 N -0.707 5.707 14 C 0.511 3.489 15 O -0.590 6.590 16 C -0.095 4.095 17 C -0.108 4.108 18 C 0.134 3.866 19 N -0.628 5.628 20 C 0.700 3.300 21 N -0.850 5.850 22 O -0.648 6.648 23 C 0.112 3.888 24 C -0.123 4.123 25 C -0.122 4.122 26 C 0.144 3.856 27 H 0.252 0.748 28 H -0.008 1.008 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.415 0.585 34 H 0.132 0.868 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.412 0.588 40 H 0.419 0.581 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.001 0.999 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.886 -17.826 18.476 25.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.239 4.239 3 Si 0.798 3.202 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.197 1.197 7 C -0.401 4.401 8 H 0.081 0.919 9 N -0.331 5.331 10 C 0.056 3.944 11 C -0.166 4.166 12 C 0.057 3.943 13 N -0.359 5.359 14 C 0.299 3.701 15 O -0.470 6.470 16 C -0.117 4.117 17 C -0.147 4.147 18 C 0.010 3.990 19 N -0.365 5.365 20 C 0.399 3.601 21 N -0.421 5.421 22 O -0.530 6.530 23 C -0.010 4.010 24 C -0.162 4.162 25 C -0.162 4.162 26 C 0.018 3.982 27 H 0.061 0.939 28 H 0.010 0.990 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.253 0.747 34 H 0.149 0.851 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.245 0.755 40 H 0.251 0.749 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.129 0.871 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.019 0.981 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.514 -18.504 17.276 25.440 hybrid contribution -0.243 1.344 -0.156 1.374 sum 2.271 -17.161 17.120 24.346 Atomic orbital electron populations 1.70149 1.06869 1.26191 1.54626 1.26088 0.96101 1.01875 0.99800 0.85320 0.77562 0.78839 0.78528 1.20272 1.22055 1.19717 1.19383 0.91195 0.85000 1.44530 0.91947 1.44228 1.39376 1.05442 1.44070 1.20469 0.88484 0.96187 0.89227 1.22233 1.02336 0.93679 0.98334 1.20582 0.97000 0.86430 0.90311 1.46034 1.66144 1.05484 1.18206 1.21304 0.76157 0.84392 0.88264 1.90710 1.46914 1.84013 1.25374 1.21339 1.04130 0.91648 0.94538 1.21649 1.01626 0.93147 0.98302 1.21447 0.97381 0.97824 0.82305 1.47361 1.47416 1.16413 1.25327 1.16151 0.79100 0.83544 0.81281 1.42982 1.45308 1.24427 1.29409 1.90927 1.71700 1.23648 1.66762 1.21935 1.04314 0.79778 0.94974 1.21957 0.99537 1.00859 0.93814 1.22149 0.98243 0.97810 0.98019 1.20974 0.97280 0.86826 0.93161 0.93936 0.99017 0.92944 0.90287 0.90715 0.93121 0.74739 0.85066 0.90576 0.93602 0.90863 0.89015 0.75467 0.74855 0.88028 0.87528 0.87121 0.92519 0.91185 0.92488 0.98142 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.77 11.54 21.65 0.25 -54.52 16 2 C -0.04 -2.32 5.00 84.86 0.42 -1.90 16 3 Si 0.97 43.75 29.57 68.60 2.03 45.78 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.27 -14.70 9.50 84.03 0.80 -13.90 16 8 H 0.06 3.30 7.86 -2.91 -0.02 3.28 16 9 N -0.61 -30.32 2.95 -699.10 -2.06 -32.38 16 10 C 0.18 8.48 5.23 86.36 0.45 8.93 16 11 C -0.13 -4.15 5.55 30.67 0.17 -3.98 16 12 C 0.16 5.15 2.42 45.02 0.11 5.26 16 13 N -0.71 -15.60 4.96 -442.40 -2.20 -17.79 16 14 C 0.51 12.27 7.12 87.65 0.62 12.90 16 15 O -0.59 -20.74 15.64 -3.06 -0.05 -20.79 16 16 C -0.10 -1.34 2.49 -11.51 -0.03 -1.37 16 17 C -0.11 -1.97 4.65 30.67 0.14 -1.82 16 18 C 0.13 2.09 6.41 86.36 0.55 2.64 16 19 N -0.63 -8.57 2.98 -836.80 -2.49 -11.07 16 20 C 0.70 12.99 8.57 179.05 1.54 14.52 16 21 N -0.85 -7.76 8.79 -184.74 -1.62 -9.39 16 22 O -0.65 -18.88 16.61 -3.99 -0.07 -18.95 16 23 C 0.11 0.58 6.42 86.36 0.55 1.14 16 24 C -0.12 -1.06 5.27 30.67 0.16 -0.90 16 25 C -0.12 -4.20 5.65 30.67 0.17 -4.03 16 26 C 0.14 6.24 6.52 86.37 0.56 6.80 16 27 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 28 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 29 H 0.05 2.70 6.59 -2.39 -0.02 2.69 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.05 1.96 7.58 -2.39 -0.02 1.94 16 33 H 0.42 5.86 8.00 -92.71 -0.74 5.12 16 34 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.08 1.52 8.07 -2.39 -0.02 1.50 16 36 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 37 H 0.07 1.53 7.03 -2.39 -0.02 1.51 16 38 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.41 0.94 6.29 -92.71 -0.58 0.35 16 40 H 0.42 3.22 8.93 -92.71 -0.83 2.40 16 41 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 42 H 0.11 0.02 5.58 -2.38 -0.01 0.01 16 43 H 0.11 0.42 7.52 -2.39 -0.02 0.40 16 44 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 48 H 0.06 2.36 7.93 -2.38 -0.02 2.34 16 Total: -1.00 -81.58 374.39 -1.13 -82.71 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -1.16 Total: 12.10 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: 6.23 Total: 24.30 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -8.12 Total: -125.15 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -0.11 Total: -39.74 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -81.58 -1.13 -82.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004116739.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.208 kcal (2) G-P(sol) polarization free energy of solvation -81.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds