Wall clock time and date at job start Fri Apr 10 2020 18:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00151 * 2 1 4 4 H 1.48499 * 109.46971 * 270.00586 * 3 2 1 5 5 H 1.48505 * 109.46986 * 30.00285 * 3 2 1 6 6 H 1.48498 * 109.47158 * 150.00045 * 3 2 1 7 7 C 1.38813 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00044 * 190.18044 * 7 2 1 9 9 N 1.36941 * 119.99638 * 10.18561 * 7 2 1 10 10 C 1.46928 * 120.63326 * 31.61632 * 9 7 2 11 11 C 1.53195 * 108.77400 * 126.41165 * 10 9 7 12 12 C 1.53038 * 109.31433 * 54.63689 * 11 10 9 13 13 C 1.53045 * 109.53599 * 298.63326 * 12 11 10 14 14 H 1.09004 * 109.49286 * 301.37958 * 13 12 11 15 15 N 1.46498 * 109.49795 * 181.32207 * 13 12 11 16 16 C 1.34770 * 120.00191 * 155.27784 * 15 13 12 17 17 O 1.21273 * 120.00128 * 359.71470 * 16 15 13 18 18 C 1.50704 * 119.99965 * 179.72189 * 16 15 13 19 19 H 1.08997 * 109.49514 * 299.93185 * 18 16 15 20 20 C 1.53039 * 109.49912 * 179.83187 * 18 16 15 21 21 C 1.53032 * 109.53839 * 178.67884 * 20 18 16 22 22 C 1.53195 * 109.31210 * 61.37111 * 21 20 18 23 23 N 1.46925 * 108.77408 * 305.36194 * 22 21 20 24 24 C 1.34779 * 120.63212 * 233.58781 * 23 22 21 25 25 N 1.34772 * 120.00049 * 5.02142 * 24 23 22 26 26 O 1.21587 * 119.99913 * 185.02686 * 24 23 22 27 27 C 1.46930 * 118.73931 * 53.60782 * 23 22 21 28 28 C 1.46929 * 120.62761 * 211.63369 * 9 7 2 29 29 H 0.97003 * 120.00387 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.58646 * 6.62413 * 10 9 7 31 31 H 1.08993 * 109.70191 * 246.26891 * 10 9 7 32 32 H 1.08998 * 109.49672 * 294.67982 * 11 10 9 33 33 H 1.09002 * 109.52020 * 174.60482 * 11 10 9 34 34 H 1.08993 * 109.45620 * 178.61419 * 12 11 10 35 35 H 1.08998 * 109.45927 * 58.64795 * 12 11 10 36 36 H 0.97001 * 119.99505 * 334.99219 * 15 13 12 37 37 H 1.08993 * 109.46087 * 298.70830 * 20 18 16 38 38 H 1.09002 * 109.45688 * 58.66084 * 20 18 16 39 39 H 1.09000 * 109.50347 * 301.42140 * 21 20 18 40 40 H 1.09000 * 109.52364 * 181.33387 * 21 20 18 41 41 H 1.08998 * 109.58949 * 185.57236 * 22 21 20 42 42 H 1.09002 * 109.70295 * 65.21797 * 22 21 20 43 43 H 0.97002 * 119.99728 * 354.96956 * 25 24 23 44 44 H 0.96994 * 120.00524 * 174.97726 * 25 24 23 45 45 H 1.08999 * 109.59020 * 186.60472 * 27 23 22 46 46 H 1.09000 * 109.70155 * 66.24731 * 27 23 22 47 47 H 1.08999 * 109.58287 * 113.80257 * 28 9 7 48 48 H 1.09001 * 109.58473 * 353.37521 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0775 -1.2096 0.1648 9 7 1.3417 -2.3786 -0.2108 10 6 0.1527 -2.4203 -1.0730 11 6 0.3557 -3.4995 -2.1411 12 6 0.6853 -4.8299 -1.4602 13 6 1.9841 -4.6889 -0.6630 14 1 2.7913 -4.3914 -1.3324 15 7 2.3155 -5.9714 -0.0373 16 6 3.5939 -6.2558 0.2805 17 8 4.4707 -5.4521 0.0438 18 6 3.9339 -7.5726 0.9299 19 1 3.4028 -7.6586 1.8778 20 6 5.4420 -7.6444 1.1801 21 6 5.7839 -8.9673 1.8693 22 6 5.3896 -10.1316 0.9552 23 7 3.9731 -9.9890 0.5921 24 6 3.1072 -11.0020 0.7933 25 7 3.5144 -12.1213 1.4241 26 8 1.9588 -10.9062 0.4057 27 6 3.5185 -8.7211 0.0050 28 6 1.7995 -3.6232 0.4218 29 1 -0.4851 0.8400 0.0004 30 1 0.0157 -1.4516 -1.5536 31 1 -0.7267 -2.6590 -0.4749 32 1 1.1781 -3.2126 -2.7964 33 1 -0.5565 -3.6073 -2.7280 34 1 0.8060 -5.6049 -2.2170 35 1 -0.1265 -5.1038 -0.7863 36 1 1.6141 -6.6142 0.1520 37 1 5.9712 -7.5829 0.2293 38 1 5.7442 -6.8138 1.8180 39 1 5.2358 -9.0405 2.8087 40 1 6.8548 -9.0079 2.0688 41 1 5.5391 -11.0751 1.4801 42 1 6.0016 -10.1143 0.0533 43 1 4.4470 -12.2284 1.6682 44 1 2.8749 -12.8197 1.6338 45 1 2.4334 -8.7339 -0.0970 46 1 3.9761 -8.5849 -0.9749 47 1 1.0558 -3.9613 1.1434 48 1 2.7492 -3.4481 0.9274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007863249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:45 Heat of formation + Delta-G solvation = -49.875794 kcal Electronic energy + Delta-G solvation = -28514.947548 eV Core-core repulsion = 24604.964361 eV Total energy + Delta-G solvation = -3909.983187 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.86489 -39.65934 -37.75740 -36.93762 -34.34063 -34.28120 -32.65111 -32.49526 -31.44683 -30.40158 -28.50493 -25.71597 -25.24623 -24.53164 -22.44348 -22.05790 -21.39159 -20.18664 -19.78779 -19.19532 -18.79455 -17.36191 -16.78302 -16.71774 -15.77448 -15.69378 -15.25265 -15.14918 -14.81008 -14.60267 -14.19678 -13.90890 -13.75960 -13.63232 -13.41867 -13.34132 -13.01870 -12.83766 -12.35058 -12.31110 -11.83136 -11.75214 -11.36348 -11.24561 -11.02660 -10.92371 -10.84434 -10.78055 -10.51972 -10.23401 -10.16621 -10.04726 -9.91530 -9.86343 -9.61147 -9.43945 -8.97608 -8.74966 -8.39068 -6.57521 -5.74186 -3.22581 2.34251 2.80630 2.91239 3.37487 3.41570 3.47645 3.50519 3.70628 4.35477 4.42155 4.54082 4.54756 4.67402 4.83061 4.93951 5.09297 5.24181 5.34702 5.36290 5.44266 5.47110 5.49780 5.59977 5.61834 5.66999 5.79065 5.91050 6.00574 6.08588 6.13960 6.21694 6.30915 6.38454 6.55219 6.59042 6.66779 6.72392 6.75105 6.89844 7.04365 7.42358 7.47226 7.72969 7.77693 7.85683 8.26327 8.45131 8.53940 9.27191 9.87473 10.45068 11.33951 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.002727 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.663892 B =10265.408791 C =11158.746800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.588 5.588 10 C 0.168 3.832 11 C -0.140 4.140 12 C -0.115 4.115 13 C 0.125 3.875 14 H 0.085 0.915 15 N -0.721 5.721 16 C 0.517 3.483 17 O -0.533 6.533 18 C -0.123 4.123 19 H 0.100 0.900 20 C -0.100 4.100 21 C -0.135 4.135 22 C 0.109 3.891 23 N -0.626 5.626 24 C 0.709 3.291 25 N -0.869 5.869 26 O -0.590 6.590 27 C 0.140 3.860 28 C 0.143 3.857 29 H 0.254 0.746 30 H 0.090 0.910 31 H 0.019 0.981 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.395 0.605 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.395 0.605 44 H 0.414 0.586 45 H 0.099 0.901 46 H 0.073 0.927 47 H 0.017 0.983 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.315 -24.747 2.500 26.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.195 4.195 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.311 5.311 10 C 0.042 3.958 11 C -0.180 4.180 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.104 0.896 15 N -0.371 5.371 16 C 0.301 3.699 17 O -0.409 6.409 18 C -0.146 4.146 19 H 0.118 0.882 20 C -0.138 4.138 21 C -0.173 4.173 22 C -0.014 4.014 23 N -0.364 5.364 24 C 0.409 3.591 25 N -0.439 5.439 26 O -0.468 6.468 27 C 0.016 3.984 28 C 0.015 3.985 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.229 0.771 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.226 0.774 44 H 0.246 0.754 45 H 0.117 0.883 46 H 0.091 0.909 47 H 0.035 0.965 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.115 -23.763 2.012 25.531 hybrid contribution 0.263 0.147 0.441 0.534 sum 9.379 -23.617 2.453 25.529 Atomic orbital electron populations 1.69976 1.05233 1.25424 1.54484 1.25164 0.95438 0.98377 1.00506 0.86233 0.79069 0.83431 0.77704 1.21388 1.21709 1.20367 1.19222 0.90864 0.83734 1.44121 0.91723 1.43959 1.31422 1.03320 1.52385 1.20848 0.88084 0.97210 0.89628 1.22192 1.00220 0.95782 0.99770 1.21677 0.96456 0.98547 0.98646 1.21757 0.97442 0.82520 0.96295 0.89648 1.46222 1.08223 1.20148 1.62514 1.20254 0.82884 0.87989 0.78757 1.90734 1.47243 1.49725 1.53150 1.21755 0.99289 0.92858 1.00652 0.88213 1.21319 0.93203 0.97157 1.02112 1.21959 1.02008 0.94546 0.98834 1.21717 0.81564 0.98836 0.99283 1.47212 1.08563 1.14089 1.66578 1.15843 0.84321 0.80355 0.78569 1.43162 1.14142 1.20919 1.65696 1.90983 1.17926 1.81326 1.56572 1.21395 1.01869 0.80052 0.95076 1.21188 0.97970 0.86915 0.92407 0.93642 0.89202 0.96330 0.92517 0.92776 0.93072 0.92235 0.77094 0.90786 0.90374 0.91258 0.90101 0.90472 0.90867 0.77403 0.75438 0.88255 0.90881 0.96545 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.65 11.04 55.49 0.61 -26.03 16 2 C 0.00 0.10 5.06 -17.43 -0.09 0.01 16 3 Si 0.91 22.29 29.57 -169.99 -5.03 17.26 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.25 -7.11 9.58 -15.06 -0.14 -7.25 16 8 H 0.07 1.85 7.85 -52.49 -0.41 1.44 16 9 N -0.59 -15.21 2.99 -172.32 -0.51 -15.73 16 10 C 0.17 4.05 5.25 -3.71 -0.02 4.03 16 11 C -0.14 -2.68 6.08 -26.61 -0.16 -2.84 16 12 C -0.12 -1.92 5.35 -26.69 -0.14 -2.06 16 13 C 0.13 2.28 2.60 -67.81 -0.18 2.10 16 14 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 15 N -0.72 -10.43 4.99 -53.69 -0.27 -10.70 16 16 C 0.52 7.58 7.12 -10.99 -0.08 7.50 16 17 O -0.53 -10.08 15.64 5.56 0.09 -9.99 16 18 C -0.12 -1.29 2.68 -91.65 -0.25 -1.53 16 19 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 20 C -0.10 -0.93 4.46 -26.69 -0.12 -1.05 16 21 C -0.14 -0.80 6.08 -26.61 -0.16 -0.96 16 22 C 0.11 0.58 6.43 -3.71 -0.02 0.55 16 23 N -0.63 -5.29 2.97 -178.49 -0.53 -5.82 16 24 C 0.71 7.12 8.57 -86.92 -0.75 6.37 16 25 N -0.87 -4.84 8.79 27.63 0.24 -4.60 16 26 O -0.59 -8.60 16.61 5.29 0.09 -8.52 16 27 C 0.14 1.38 5.56 -3.71 -0.02 1.36 16 28 C 0.14 3.17 6.09 -3.71 -0.02 3.15 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.09 2.42 6.11 -51.93 -0.32 2.11 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.40 4.72 8.14 -40.82 -0.33 4.38 16 37 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 38 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.20 5.57 -51.93 -0.29 -0.09 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.40 1.06 6.29 -40.82 -0.26 0.80 16 44 H 0.41 1.90 8.93 -40.82 -0.36 1.53 16 45 H 0.10 1.09 6.63 -51.93 -0.34 0.74 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 1.35 7.93 -51.93 -0.41 0.94 16 LS Contribution 373.93 15.07 5.63 5.63 Total: -1.00 -35.65 373.93 -9.57 -45.23 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.75 Total: 3.88 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: -2.15 Total: 9.39 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.46 Total: -62.89 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.17 Total: -18.50 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.65 -9.57 -45.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007863249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.651 kcal (2) G-P(sol) polarization free energy of solvation -35.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds