Wall clock time and date at job start Fri Apr 10 2020 18:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00151 * 2 1 4 4 H 1.48499 * 109.46971 * 270.00586 * 3 2 1 5 5 H 1.48505 * 109.46986 * 30.00285 * 3 2 1 6 6 H 1.48498 * 109.47158 * 150.00045 * 3 2 1 7 7 C 1.38813 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00044 * 190.18044 * 7 2 1 9 9 N 1.36941 * 119.99638 * 10.18561 * 7 2 1 10 10 C 1.46928 * 120.63326 * 31.61632 * 9 7 2 11 11 C 1.53195 * 108.77400 * 126.41165 * 10 9 7 12 12 C 1.53038 * 109.31433 * 54.63689 * 11 10 9 13 13 C 1.53045 * 109.53599 * 298.63326 * 12 11 10 14 14 H 1.09004 * 109.49286 * 301.37958 * 13 12 11 15 15 N 1.46498 * 109.49795 * 181.32207 * 13 12 11 16 16 C 1.34770 * 120.00191 * 155.27784 * 15 13 12 17 17 O 1.21273 * 120.00128 * 359.71470 * 16 15 13 18 18 C 1.50704 * 119.99965 * 179.72189 * 16 15 13 19 19 H 1.08997 * 109.49514 * 299.93185 * 18 16 15 20 20 C 1.53039 * 109.49912 * 179.83187 * 18 16 15 21 21 C 1.53032 * 109.53839 * 178.67884 * 20 18 16 22 22 C 1.53195 * 109.31210 * 61.37111 * 21 20 18 23 23 N 1.46925 * 108.77408 * 305.36194 * 22 21 20 24 24 C 1.34779 * 120.63212 * 233.58781 * 23 22 21 25 25 N 1.34772 * 120.00049 * 5.02142 * 24 23 22 26 26 O 1.21587 * 119.99913 * 185.02686 * 24 23 22 27 27 C 1.46930 * 118.73931 * 53.60782 * 23 22 21 28 28 C 1.46929 * 120.62761 * 211.63369 * 9 7 2 29 29 H 0.97003 * 120.00387 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.58646 * 6.62413 * 10 9 7 31 31 H 1.08993 * 109.70191 * 246.26891 * 10 9 7 32 32 H 1.08998 * 109.49672 * 294.67982 * 11 10 9 33 33 H 1.09002 * 109.52020 * 174.60482 * 11 10 9 34 34 H 1.08993 * 109.45620 * 178.61419 * 12 11 10 35 35 H 1.08998 * 109.45927 * 58.64795 * 12 11 10 36 36 H 0.97001 * 119.99505 * 334.99219 * 15 13 12 37 37 H 1.08993 * 109.46087 * 298.70830 * 20 18 16 38 38 H 1.09002 * 109.45688 * 58.66084 * 20 18 16 39 39 H 1.09000 * 109.50347 * 301.42140 * 21 20 18 40 40 H 1.09000 * 109.52364 * 181.33387 * 21 20 18 41 41 H 1.08998 * 109.58949 * 185.57236 * 22 21 20 42 42 H 1.09002 * 109.70295 * 65.21797 * 22 21 20 43 43 H 0.97002 * 119.99728 * 354.96956 * 25 24 23 44 44 H 0.96994 * 120.00524 * 174.97726 * 25 24 23 45 45 H 1.08999 * 109.59020 * 186.60472 * 27 23 22 46 46 H 1.09000 * 109.70155 * 66.24731 * 27 23 22 47 47 H 1.08999 * 109.58287 * 113.80257 * 28 9 7 48 48 H 1.09001 * 109.58473 * 353.37521 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0775 -1.2096 0.1648 9 7 1.3417 -2.3786 -0.2108 10 6 0.1527 -2.4203 -1.0730 11 6 0.3557 -3.4995 -2.1411 12 6 0.6853 -4.8299 -1.4602 13 6 1.9841 -4.6889 -0.6630 14 1 2.7913 -4.3914 -1.3324 15 7 2.3155 -5.9714 -0.0373 16 6 3.5939 -6.2558 0.2805 17 8 4.4707 -5.4521 0.0438 18 6 3.9339 -7.5726 0.9299 19 1 3.4028 -7.6586 1.8778 20 6 5.4420 -7.6444 1.1801 21 6 5.7839 -8.9673 1.8693 22 6 5.3896 -10.1316 0.9552 23 7 3.9731 -9.9890 0.5921 24 6 3.1072 -11.0020 0.7933 25 7 3.5144 -12.1213 1.4241 26 8 1.9588 -10.9062 0.4057 27 6 3.5185 -8.7211 0.0050 28 6 1.7995 -3.6232 0.4218 29 1 -0.4851 0.8400 0.0004 30 1 0.0157 -1.4516 -1.5536 31 1 -0.7267 -2.6590 -0.4749 32 1 1.1781 -3.2126 -2.7964 33 1 -0.5565 -3.6073 -2.7280 34 1 0.8060 -5.6049 -2.2170 35 1 -0.1265 -5.1038 -0.7863 36 1 1.6141 -6.6142 0.1520 37 1 5.9712 -7.5829 0.2293 38 1 5.7442 -6.8138 1.8180 39 1 5.2358 -9.0405 2.8087 40 1 6.8548 -9.0079 2.0688 41 1 5.5391 -11.0751 1.4801 42 1 6.0016 -10.1143 0.0533 43 1 4.4470 -12.2284 1.6682 44 1 2.8749 -12.8197 1.6338 45 1 2.4334 -8.7339 -0.0970 46 1 3.9761 -8.5849 -0.9749 47 1 1.0558 -3.9613 1.1434 48 1 2.7492 -3.4481 0.9274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007863249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:44 Heat of formation + Delta-G solvation = -77.163000 kcal Electronic energy + Delta-G solvation = -28516.130810 eV Core-core repulsion = 24604.964361 eV Total energy + Delta-G solvation = -3911.166449 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.71132 -40.78611 -39.15603 -38.01231 -35.94993 -35.05953 -34.17619 -33.32524 -32.34459 -32.31251 -30.05273 -27.27632 -26.40101 -25.46617 -23.89904 -23.61251 -22.44340 -21.38361 -20.92063 -20.42241 -19.43472 -18.73017 -18.14931 -17.73092 -17.22184 -16.73807 -16.54963 -16.20488 -15.91413 -15.66307 -15.45665 -15.34024 -15.10400 -14.89123 -14.56075 -14.34548 -14.20889 -14.09329 -13.97568 -13.60485 -13.38871 -13.00638 -12.78865 -12.62682 -12.47576 -12.13754 -12.01564 -11.98802 -11.96975 -11.75266 -11.67432 -11.56534 -11.33769 -11.30881 -10.79625 -10.67931 -10.61962 -10.13039 -9.63742 -8.65345 -7.90673 -5.43176 1.43508 1.44546 1.51067 1.54333 1.80764 2.12979 2.19506 2.49217 3.22613 3.24114 3.58031 3.67963 3.77077 3.81100 3.88603 4.02925 4.10805 4.12852 4.23654 4.27755 4.47258 4.51033 4.55690 4.57681 4.74439 4.75679 4.79896 4.89988 4.91140 5.00990 5.04735 5.11791 5.16330 5.18934 5.26482 5.38997 5.42782 5.47513 5.56851 5.61412 5.76713 5.84379 6.04027 6.37988 6.57257 6.91791 7.12407 7.27183 7.62263 7.80245 8.32006 9.14320 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.002727 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.663892 B =10265.408791 C =11158.746800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.044 4.044 3 Si 0.970 3.030 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.268 4.268 8 H 0.053 0.947 9 N -0.608 5.608 10 C 0.172 3.828 11 C -0.130 4.130 12 C -0.106 4.106 13 C 0.141 3.859 14 H 0.059 0.941 15 N -0.710 5.710 16 C 0.515 3.485 17 O -0.578 6.578 18 C -0.108 4.108 19 H 0.109 0.891 20 C -0.101 4.101 21 C -0.126 4.126 22 C 0.105 3.895 23 N -0.624 5.624 24 C 0.703 3.297 25 N -0.847 5.847 26 O -0.641 6.641 27 C 0.145 3.855 28 C 0.146 3.854 29 H 0.253 0.747 30 H 0.056 0.944 31 H 0.003 0.997 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.412 0.588 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.412 0.588 44 H 0.420 0.580 45 H 0.089 0.911 46 H 0.072 0.928 47 H 0.018 0.982 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.271 -27.421 2.695 29.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.240 4.240 3 Si 0.797 3.203 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.399 4.399 8 H 0.071 0.929 9 N -0.332 5.332 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.144 4.144 13 C 0.035 3.965 14 H 0.078 0.922 15 N -0.361 5.361 16 C 0.301 3.699 17 O -0.457 6.457 18 C -0.130 4.130 19 H 0.127 0.873 20 C -0.139 4.139 21 C -0.164 4.164 22 C -0.017 4.017 23 N -0.361 5.361 24 C 0.403 3.597 25 N -0.419 5.419 26 O -0.523 6.523 27 C 0.020 3.980 28 C 0.019 3.981 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.021 0.979 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.249 0.751 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.129 0.871 42 H 0.100 0.900 43 H 0.246 0.754 44 H 0.253 0.747 45 H 0.107 0.893 46 H 0.090 0.910 47 H 0.036 0.964 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 10.108 -26.521 2.236 28.470 hybrid contribution 0.010 0.958 0.433 1.051 sum 10.118 -25.563 2.668 27.622 Atomic orbital electron populations 1.70124 1.06429 1.26002 1.55143 1.25891 0.96305 1.01385 1.00392 0.85237 0.77902 0.79306 0.77804 1.20751 1.21381 1.19896 1.19399 0.90717 0.85341 1.44413 0.92942 1.44189 1.31778 1.03769 1.53423 1.20709 0.86967 0.97363 0.90226 1.22023 1.01349 0.95270 0.98266 1.21612 0.95490 0.97964 0.99298 1.21249 0.97695 0.82959 0.94606 0.92239 1.46045 1.08999 1.19009 1.62073 1.21037 0.82132 0.88981 0.77706 1.90717 1.48493 1.51556 1.54929 1.21681 1.00394 0.90414 1.00539 0.87258 1.21335 0.91989 0.98792 1.01762 1.21918 1.03493 0.92446 0.98504 1.21987 0.79575 1.00105 1.00005 1.47198 1.09703 1.13083 1.66120 1.16074 0.83741 0.81306 0.78626 1.42955 1.15277 1.19583 1.64071 1.90949 1.20203 1.82424 1.58743 1.21215 1.01317 0.80561 0.94881 1.21208 0.96348 0.86960 0.93556 0.93822 0.92582 0.97884 0.93340 0.89890 0.89629 0.90948 0.75138 0.91659 0.92225 0.90924 0.87859 0.87114 0.89951 0.75444 0.74664 0.89258 0.90967 0.96431 0.95096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.22 11.04 21.65 0.24 -55.98 16 2 C -0.04 -2.56 5.06 84.86 0.43 -2.13 16 3 Si 0.97 46.79 29.57 68.60 2.03 48.81 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.27 -15.85 9.58 84.03 0.81 -15.05 16 8 H 0.05 3.15 7.85 -2.91 -0.02 3.13 16 9 N -0.61 -32.54 2.99 -699.09 -2.09 -34.63 16 10 C 0.17 8.52 5.25 86.36 0.45 8.97 16 11 C -0.13 -4.85 6.08 30.67 0.19 -4.66 16 12 C -0.11 -3.33 5.35 30.62 0.16 -3.17 16 13 C 0.14 5.16 2.60 45.07 0.12 5.28 16 14 H 0.06 2.52 7.58 -2.38 -0.02 2.50 16 15 N -0.71 -20.18 4.99 -442.17 -2.20 -22.39 16 16 C 0.51 15.14 7.12 87.66 0.62 15.77 16 17 O -0.58 -22.58 15.64 -3.01 -0.05 -22.62 16 18 C -0.11 -2.16 2.68 -11.46 -0.03 -2.19 16 19 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 20 C -0.10 -1.77 4.46 30.62 0.14 -1.63 16 21 C -0.13 -1.11 6.08 30.67 0.19 -0.93 16 22 C 0.11 0.74 6.43 86.36 0.56 1.30 16 23 N -0.62 -9.04 2.97 -836.89 -2.49 -11.52 16 24 C 0.70 12.57 8.57 179.06 1.53 14.10 16 25 N -0.85 -6.85 8.79 -184.75 -1.62 -8.48 16 26 O -0.64 -18.00 16.61 -3.99 -0.07 -18.07 16 27 C 0.14 2.65 5.56 86.36 0.48 3.13 16 28 C 0.15 6.70 6.09 86.36 0.53 7.23 16 29 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 30 H 0.06 3.13 6.11 -2.39 -0.01 3.12 16 31 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.41 9.21 8.14 -92.71 -0.75 8.45 16 37 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 38 H 0.06 1.27 8.07 -2.39 -0.02 1.25 16 39 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.11 0.05 5.57 -2.39 -0.01 0.03 16 42 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.41 0.52 6.29 -92.71 -0.58 -0.07 16 44 H 0.42 2.73 8.93 -92.71 -0.83 1.90 16 45 H 0.09 1.85 6.63 -2.39 -0.02 1.84 16 46 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.03 1.53 7.93 -2.39 -0.02 1.52 16 Total: -1.00 -81.79 373.93 -1.25 -83.04 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -1.17 Total: 15.81 kcal Atomic # 6 Polarization: 19.87 SS G_CDS: 6.17 Total: 26.03 kcal Atomic # 7 Polarization: -124.84 SS G_CDS: -8.16 Total: -133.00 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -0.11 Total: -40.69 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -81.79 -1.25 -83.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007863249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.875 kcal (2) G-P(sol) polarization free energy of solvation -81.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds