Wall clock time and date at job start Fri Apr 10 2020 18:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00016 * 2 1 4 4 H 1.48492 * 109.47666 * 270.00611 * 3 2 1 5 5 H 1.48504 * 109.46903 * 30.00970 * 3 2 1 6 6 H 1.48507 * 109.47135 * 150.00109 * 3 2 1 7 7 C 1.38812 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00493 * 190.42579 * 7 2 1 9 9 N 1.36940 * 120.00198 * 10.42713 * 7 2 1 10 10 C 1.46928 * 120.62912 * 30.99737 * 9 7 2 11 11 C 1.53187 * 108.77864 * 126.37144 * 10 9 7 12 12 C 1.53038 * 109.31144 * 54.63328 * 11 10 9 13 13 C 1.53045 * 109.54046 * 298.63543 * 12 11 10 14 14 H 1.08998 * 109.49577 * 301.41377 * 13 12 11 15 15 N 1.46500 * 109.52531 * 181.33495 * 13 12 11 16 16 C 1.34771 * 119.99839 * 155.08186 * 15 13 12 17 17 O 1.21286 * 120.00341 * 0.02562 * 16 15 13 18 18 C 1.50703 * 120.00024 * 179.97438 * 16 15 13 19 19 H 1.09003 * 109.49465 * 60.06532 * 18 16 15 20 20 C 1.53031 * 109.50051 * 180.16363 * 18 16 15 21 21 C 1.53045 * 109.54054 * 181.32084 * 20 18 16 22 22 C 1.53198 * 109.30908 * 298.63331 * 21 20 18 23 23 N 1.46921 * 108.77396 * 54.63440 * 22 21 20 24 24 C 1.34772 * 120.63022 * 126.41277 * 23 22 21 25 25 N 1.34775 * 120.00337 * 5.16097 * 24 23 22 26 26 O 1.21592 * 120.00454 * 185.16507 * 24 23 22 27 27 C 1.46925 * 118.74048 * 306.39140 * 23 22 21 28 28 C 1.46924 * 120.63209 * 210.97698 * 9 7 2 29 29 H 0.96991 * 120.00301 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.58342 * 246.16087 * 10 9 7 31 31 H 1.09001 * 109.58736 * 6.58254 * 10 9 7 32 32 H 1.08992 * 109.50110 * 174.59053 * 11 10 9 33 33 H 1.09005 * 109.49831 * 294.65005 * 11 10 9 34 34 H 1.09007 * 109.46018 * 178.62036 * 12 11 10 35 35 H 1.08991 * 109.46235 * 58.66016 * 12 11 10 36 36 H 0.97002 * 119.99629 * 335.07532 * 15 13 12 37 37 H 1.08999 * 109.46159 * 301.33937 * 20 18 16 38 38 H 1.09004 * 109.46171 * 61.29971 * 20 18 16 39 39 H 1.08993 * 109.49880 * 178.68490 * 21 20 18 40 40 H 1.09000 * 109.49885 * 58.58458 * 21 20 18 41 41 H 1.08999 * 109.58664 * 294.84594 * 22 21 20 42 42 H 1.08998 * 109.58093 * 174.42168 * 22 21 20 43 43 H 0.97004 * 120.00002 * 354.81746 * 25 24 23 44 44 H 0.96998 * 120.00691 * 174.81611 * 25 24 23 45 45 H 1.09002 * 109.58839 * 293.81677 * 27 23 22 46 46 H 1.09005 * 109.59184 * 173.39877 * 27 23 22 47 47 H 1.08998 * 109.58668 * 113.84249 * 28 9 7 48 48 H 1.08996 * 109.58749 * 353.41074 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0466 -1.3999 5 1 1.4476 2.6526 0.7003 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0769 -1.2100 0.1687 9 7 1.3425 -2.3782 -0.2157 10 6 0.1488 -2.4156 -1.0715 11 6 0.3480 -3.4857 -2.1493 12 6 0.6842 -4.8207 -1.4809 13 6 1.9872 -4.6834 -0.6900 14 1 2.7899 -4.3783 -1.3613 15 7 2.3255 -5.9700 -0.0764 16 6 3.6070 -6.2551 0.2281 17 8 4.4802 -5.4463 -0.0054 18 6 3.9550 -7.5784 0.8597 19 1 3.6572 -8.3886 0.1942 20 6 5.4641 -7.6463 1.1048 21 6 5.8228 -9.0028 1.7160 22 6 5.1070 -9.1574 3.0616 23 7 3.6670 -8.9492 2.8578 24 6 2.7747 -9.8709 3.2709 25 7 3.1906 -10.9461 3.9691 26 8 1.5943 -9.7326 3.0137 27 6 3.2181 -7.7169 2.1956 28 6 1.8065 -3.6267 0.4044 29 1 -0.4850 0.8399 0.0004 30 1 -0.7253 -2.6622 -0.4687 31 1 0.0071 -1.4434 -1.5436 32 1 -0.5675 -3.5906 -2.7314 33 1 1.1657 -3.1916 -2.8073 34 1 0.8024 -5.5896 -2.2446 35 1 -0.1231 -5.1018 -0.8048 36 1 1.6271 -6.6166 0.1107 37 1 5.9915 -7.5234 0.1589 38 1 5.7569 -6.8505 1.7898 39 1 6.9005 -9.0594 1.8687 40 1 5.5078 -9.8000 1.0427 41 1 5.4873 -8.4167 3.7651 42 1 5.2794 -10.1595 3.4541 43 1 4.1386 -11.0960 4.1097 44 1 2.5420 -11.5700 4.3310 45 1 3.4443 -6.8587 2.8284 46 1 2.1440 -7.7684 2.0167 47 1 1.0676 -3.9722 1.1275 48 1 2.7586 -3.4538 0.9060 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007863253.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:53 Heat of formation + Delta-G solvation = -49.853418 kcal Electronic energy + Delta-G solvation = -28619.304439 eV Core-core repulsion = 24709.322222 eV Total energy + Delta-G solvation = -3909.982216 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.83486 -39.64239 -37.73976 -36.92305 -34.31991 -34.27004 -32.62159 -32.48978 -31.42110 -30.40153 -28.49962 -25.69105 -25.24006 -24.50315 -22.43607 -22.05219 -21.37541 -20.19615 -19.72305 -19.22417 -18.73629 -17.32819 -16.76923 -16.73364 -15.84967 -15.60593 -15.20393 -15.08842 -14.75054 -14.58996 -14.22358 -13.94670 -13.69759 -13.68597 -13.32497 -13.25887 -13.15387 -12.76094 -12.35991 -12.30086 -11.79843 -11.75345 -11.35422 -11.23003 -11.02911 -10.89642 -10.84225 -10.77965 -10.48049 -10.22652 -10.16455 -10.01649 -9.90923 -9.85282 -9.60637 -9.43631 -8.93120 -8.75125 -8.38413 -6.57702 -5.73359 -3.21243 2.37811 2.82272 2.94036 3.38047 3.42046 3.48150 3.50952 3.74347 4.37078 4.44437 4.54637 4.56128 4.70264 4.85284 4.96652 5.11865 5.25991 5.36301 5.38332 5.44324 5.49341 5.53053 5.60387 5.64080 5.67221 5.78997 5.90361 6.03968 6.10019 6.13958 6.22077 6.30806 6.42136 6.58474 6.59088 6.66999 6.72971 6.75363 6.90248 7.05015 7.43242 7.50840 7.73884 7.78255 7.86075 8.30010 8.45619 8.54276 9.27757 9.88277 10.45446 11.34722 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017927 B = 0.002849 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.535350 B = 9825.573387 C =10198.790171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.115 4.115 13 C 0.125 3.875 14 H 0.085 0.915 15 N -0.721 5.721 16 C 0.516 3.484 17 O -0.533 6.533 18 C -0.122 4.122 19 H 0.098 0.902 20 C -0.100 4.100 21 C -0.135 4.135 22 C 0.109 3.891 23 N -0.626 5.626 24 C 0.709 3.291 25 N -0.869 5.869 26 O -0.590 6.590 27 C 0.138 3.862 28 C 0.143 3.857 29 H 0.253 0.747 30 H 0.019 0.981 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.396 0.604 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.395 0.605 44 H 0.413 0.587 45 H 0.076 0.924 46 H 0.100 0.900 47 H 0.018 0.982 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.080 -23.629 4.706 25.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.195 4.195 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.311 5.311 10 C 0.042 3.958 11 C -0.180 4.180 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.103 0.897 15 N -0.371 5.371 16 C 0.301 3.699 17 O -0.409 6.409 18 C -0.144 4.144 19 H 0.116 0.884 20 C -0.138 4.138 21 C -0.173 4.173 22 C -0.014 4.014 23 N -0.364 5.364 24 C 0.409 3.591 25 N -0.439 5.439 26 O -0.468 6.468 27 C 0.014 3.986 28 C 0.015 3.985 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.229 0.771 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.226 0.774 44 H 0.245 0.755 45 H 0.094 0.906 46 H 0.119 0.881 47 H 0.036 0.964 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.854 -22.614 4.306 24.665 hybrid contribution 0.292 0.092 0.310 0.436 sum 9.146 -22.522 4.616 24.743 Atomic orbital electron populations 1.69972 1.05218 1.25405 1.54551 1.25143 0.95435 0.98351 1.00600 0.86232 0.79063 0.83451 0.77687 1.21417 1.21719 1.20373 1.19230 0.90927 0.83774 1.43946 0.91695 1.43967 1.31005 1.03080 1.53057 1.20870 0.88001 0.97381 0.89576 1.22191 1.00168 0.95744 0.99862 1.21679 0.96470 0.98525 0.98656 1.21758 0.97321 0.82455 0.96503 0.89690 1.46222 1.08083 1.19721 1.63085 1.20274 0.82873 0.88032 0.78742 1.90736 1.47577 1.49325 1.53255 1.21735 0.98247 0.96667 0.97789 0.88383 1.21326 0.93192 0.96798 1.02502 1.21957 1.00581 0.98378 0.96380 1.21715 0.80184 1.01543 0.97999 1.47214 1.05868 1.20640 1.62706 1.15845 0.84766 0.79897 0.78600 1.43160 1.11873 1.28083 1.60818 1.90985 1.15492 1.78106 1.62185 1.21432 1.00381 0.85306 0.91457 1.21184 0.97985 0.86874 0.92416 0.93649 0.96329 0.89062 0.92795 0.92537 0.93185 0.92191 0.77066 0.90549 0.90626 0.90104 0.91386 0.90789 0.90475 0.77437 0.75454 0.90585 0.88124 0.96449 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.66 11.01 55.49 0.61 -26.05 16 2 C 0.00 0.08 5.06 -17.43 -0.09 -0.01 16 3 Si 0.91 22.30 29.57 -169.99 -5.03 17.27 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.25 -7.09 9.59 -15.06 -0.14 -7.23 16 8 H 0.07 1.86 7.85 -52.48 -0.41 1.45 16 9 N -0.59 -15.22 2.99 -172.32 -0.51 -15.74 16 10 C 0.17 4.04 5.26 -3.71 -0.02 4.02 16 11 C -0.14 -2.68 6.08 -26.62 -0.16 -2.84 16 12 C -0.12 -1.92 5.36 -26.69 -0.14 -2.07 16 13 C 0.12 2.28 2.60 -67.81 -0.18 2.11 16 14 H 0.08 1.77 7.58 -51.93 -0.39 1.38 16 15 N -0.72 -10.49 4.99 -53.69 -0.27 -10.75 16 16 C 0.52 7.61 7.12 -10.99 -0.08 7.53 16 17 O -0.53 -10.11 15.64 5.55 0.09 -10.02 16 18 C -0.12 -1.29 2.68 -91.66 -0.25 -1.54 16 19 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 20 C -0.10 -0.94 4.46 -26.69 -0.12 -1.06 16 21 C -0.13 -0.82 6.08 -26.61 -0.16 -0.98 16 22 C 0.11 0.62 6.39 -3.71 -0.02 0.60 16 23 N -0.63 -5.62 2.97 -178.50 -0.53 -6.15 16 24 C 0.71 7.45 8.57 -86.92 -0.74 6.70 16 25 N -0.87 -5.17 8.78 27.63 0.24 -4.93 16 26 O -0.59 -8.89 16.60 5.28 0.09 -8.80 16 27 C 0.14 1.46 5.58 -3.71 -0.02 1.44 16 28 C 0.14 3.17 6.09 -3.71 -0.02 3.15 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 2.47 6.06 -51.93 -0.31 2.15 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.40 4.76 8.14 -40.82 -0.33 4.43 16 37 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 38 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.23 5.64 -51.93 -0.29 -0.06 16 43 H 0.40 1.19 6.32 -40.82 -0.26 0.93 16 44 H 0.41 2.04 8.93 -40.82 -0.36 1.68 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.10 1.19 6.59 -51.93 -0.34 0.85 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 1.35 7.93 -51.93 -0.41 0.93 16 LS Contribution 373.90 15.07 5.63 5.63 Total: -1.00 -35.64 373.90 -9.57 -45.22 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -7.75 Total: 4.48 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: -2.15 Total: 9.83 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: -0.46 Total: -63.61 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.17 Total: -18.83 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.64 -9.57 -45.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007863253.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.638 kcal (2) G-P(sol) polarization free energy of solvation -35.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds