Wall clock time and date at job start Fri Apr 10 2020 18:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00016 * 2 1 4 4 H 1.48492 * 109.47666 * 270.00611 * 3 2 1 5 5 H 1.48504 * 109.46903 * 30.00970 * 3 2 1 6 6 H 1.48507 * 109.47135 * 150.00109 * 3 2 1 7 7 C 1.38812 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00493 * 190.42579 * 7 2 1 9 9 N 1.36940 * 120.00198 * 10.42713 * 7 2 1 10 10 C 1.46928 * 120.62912 * 30.99737 * 9 7 2 11 11 C 1.53187 * 108.77864 * 126.37144 * 10 9 7 12 12 C 1.53038 * 109.31144 * 54.63328 * 11 10 9 13 13 C 1.53045 * 109.54046 * 298.63543 * 12 11 10 14 14 H 1.08998 * 109.49577 * 301.41377 * 13 12 11 15 15 N 1.46500 * 109.52531 * 181.33495 * 13 12 11 16 16 C 1.34771 * 119.99839 * 155.08186 * 15 13 12 17 17 O 1.21286 * 120.00341 * 0.02562 * 16 15 13 18 18 C 1.50703 * 120.00024 * 179.97438 * 16 15 13 19 19 H 1.09003 * 109.49465 * 60.06532 * 18 16 15 20 20 C 1.53031 * 109.50051 * 180.16363 * 18 16 15 21 21 C 1.53045 * 109.54054 * 181.32084 * 20 18 16 22 22 C 1.53198 * 109.30908 * 298.63331 * 21 20 18 23 23 N 1.46921 * 108.77396 * 54.63440 * 22 21 20 24 24 C 1.34772 * 120.63022 * 126.41277 * 23 22 21 25 25 N 1.34775 * 120.00337 * 5.16097 * 24 23 22 26 26 O 1.21592 * 120.00454 * 185.16507 * 24 23 22 27 27 C 1.46925 * 118.74048 * 306.39140 * 23 22 21 28 28 C 1.46924 * 120.63209 * 210.97698 * 9 7 2 29 29 H 0.96991 * 120.00301 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.58342 * 246.16087 * 10 9 7 31 31 H 1.09001 * 109.58736 * 6.58254 * 10 9 7 32 32 H 1.08992 * 109.50110 * 174.59053 * 11 10 9 33 33 H 1.09005 * 109.49831 * 294.65005 * 11 10 9 34 34 H 1.09007 * 109.46018 * 178.62036 * 12 11 10 35 35 H 1.08991 * 109.46235 * 58.66016 * 12 11 10 36 36 H 0.97002 * 119.99629 * 335.07532 * 15 13 12 37 37 H 1.08999 * 109.46159 * 301.33937 * 20 18 16 38 38 H 1.09004 * 109.46171 * 61.29971 * 20 18 16 39 39 H 1.08993 * 109.49880 * 178.68490 * 21 20 18 40 40 H 1.09000 * 109.49885 * 58.58458 * 21 20 18 41 41 H 1.08999 * 109.58664 * 294.84594 * 22 21 20 42 42 H 1.08998 * 109.58093 * 174.42168 * 22 21 20 43 43 H 0.97004 * 120.00002 * 354.81746 * 25 24 23 44 44 H 0.96998 * 120.00691 * 174.81611 * 25 24 23 45 45 H 1.09002 * 109.58839 * 293.81677 * 27 23 22 46 46 H 1.09005 * 109.59184 * 173.39877 * 27 23 22 47 47 H 1.08998 * 109.58668 * 113.84249 * 28 9 7 48 48 H 1.08996 * 109.58749 * 353.41074 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0466 -1.3999 5 1 1.4476 2.6526 0.7003 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0769 -1.2100 0.1687 9 7 1.3425 -2.3782 -0.2157 10 6 0.1488 -2.4156 -1.0715 11 6 0.3480 -3.4857 -2.1493 12 6 0.6842 -4.8207 -1.4809 13 6 1.9872 -4.6834 -0.6900 14 1 2.7899 -4.3783 -1.3613 15 7 2.3255 -5.9700 -0.0764 16 6 3.6070 -6.2551 0.2281 17 8 4.4802 -5.4463 -0.0054 18 6 3.9550 -7.5784 0.8597 19 1 3.6572 -8.3886 0.1942 20 6 5.4641 -7.6463 1.1048 21 6 5.8228 -9.0028 1.7160 22 6 5.1070 -9.1574 3.0616 23 7 3.6670 -8.9492 2.8578 24 6 2.7747 -9.8709 3.2709 25 7 3.1906 -10.9461 3.9691 26 8 1.5943 -9.7326 3.0137 27 6 3.2181 -7.7169 2.1956 28 6 1.8065 -3.6267 0.4044 29 1 -0.4850 0.8399 0.0004 30 1 -0.7253 -2.6622 -0.4687 31 1 0.0071 -1.4434 -1.5436 32 1 -0.5675 -3.5906 -2.7314 33 1 1.1657 -3.1916 -2.8073 34 1 0.8024 -5.5896 -2.2446 35 1 -0.1231 -5.1018 -0.8048 36 1 1.6271 -6.6166 0.1107 37 1 5.9915 -7.5234 0.1589 38 1 5.7569 -6.8505 1.7898 39 1 6.9005 -9.0594 1.8687 40 1 5.5078 -9.8000 1.0427 41 1 5.4873 -8.4167 3.7651 42 1 5.2794 -10.1595 3.4541 43 1 4.1386 -11.0960 4.1097 44 1 2.5420 -11.5700 4.3310 45 1 3.4443 -6.8587 2.8284 46 1 2.1440 -7.7684 2.0167 47 1 1.0676 -3.9722 1.1275 48 1 2.7586 -3.4538 0.9060 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007863253.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:52 Heat of formation + Delta-G solvation = -77.161522 kcal Electronic energy + Delta-G solvation = -28620.488607 eV Core-core repulsion = 24709.322222 eV Total energy + Delta-G solvation = -3911.166385 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.71660 -40.78846 -39.15511 -38.01558 -35.94950 -35.07386 -34.17455 -33.32667 -32.34150 -32.31639 -30.05707 -27.27520 -26.41315 -25.46330 -23.90516 -23.61462 -22.44396 -21.38473 -20.90650 -20.45409 -19.42079 -18.73032 -18.15459 -17.74647 -17.23702 -16.73639 -16.60143 -16.09802 -15.89354 -15.73515 -15.42574 -15.34658 -15.06171 -14.95746 -14.54606 -14.36421 -14.23226 -14.08568 -13.99346 -13.60347 -13.37842 -13.00813 -12.78630 -12.57880 -12.52305 -12.14076 -12.01834 -11.98915 -11.96510 -11.75486 -11.68097 -11.56269 -11.32946 -11.31931 -10.79546 -10.69238 -10.61644 -10.12365 -9.65120 -8.65703 -7.90047 -5.42008 1.43692 1.44785 1.49543 1.54631 1.81772 2.11867 2.18333 2.49626 3.22190 3.24581 3.57539 3.68167 3.76934 3.80329 3.89006 4.02940 4.10334 4.12646 4.22636 4.27911 4.46975 4.50532 4.55024 4.58143 4.74145 4.75127 4.79949 4.89249 4.91489 5.01193 5.04148 5.11637 5.16446 5.17472 5.26302 5.38779 5.42034 5.47700 5.57097 5.61717 5.77120 5.83637 6.03086 6.38216 6.57131 6.91104 7.12723 7.27005 7.61383 7.80834 8.32242 9.14925 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017927 B = 0.002849 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.535350 B = 9825.573387 C =10198.790171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.044 4.044 3 Si 0.970 3.030 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.268 4.268 8 H 0.053 0.947 9 N -0.608 5.608 10 C 0.172 3.828 11 C -0.129 4.129 12 C -0.106 4.106 13 C 0.141 3.859 14 H 0.059 0.941 15 N -0.710 5.710 16 C 0.515 3.485 17 O -0.578 6.578 18 C -0.106 4.106 19 H 0.116 0.884 20 C -0.101 4.101 21 C -0.124 4.124 22 C 0.103 3.897 23 N -0.623 5.623 24 C 0.703 3.297 25 N -0.847 5.847 26 O -0.642 6.642 27 C 0.142 3.858 28 C 0.147 3.853 29 H 0.252 0.748 30 H 0.002 0.998 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.412 0.588 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.112 0.888 43 H 0.412 0.588 44 H 0.420 0.580 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.017 0.983 48 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.122 -26.353 4.831 28.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.240 4.240 3 Si 0.798 3.202 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.398 4.398 8 H 0.071 0.929 9 N -0.332 5.332 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.144 4.144 13 C 0.035 3.965 14 H 0.077 0.923 15 N -0.361 5.361 16 C 0.301 3.699 17 O -0.457 6.457 18 C -0.128 4.128 19 H 0.134 0.866 20 C -0.139 4.139 21 C -0.163 4.163 22 C -0.019 4.019 23 N -0.361 5.361 24 C 0.402 3.598 25 N -0.418 5.418 26 O -0.523 6.523 27 C 0.017 3.983 28 C 0.020 3.980 29 H 0.062 0.938 30 H 0.020 0.980 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.249 0.751 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.130 0.870 43 H 0.246 0.754 44 H 0.254 0.746 45 H 0.084 0.916 46 H 0.106 0.894 47 H 0.035 0.965 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 9.936 -25.423 4.458 27.657 hybrid contribution 0.008 0.922 0.335 0.981 sum 9.944 -24.501 4.793 26.873 Atomic orbital electron populations 1.70123 1.06422 1.25975 1.55217 1.25871 0.96297 1.01355 1.00487 0.85236 0.77903 0.79319 0.77790 1.20767 1.21421 1.19879 1.19413 0.90794 0.85372 1.44236 0.92880 1.44198 1.31367 1.03537 1.54074 1.20730 0.86868 0.97517 0.90234 1.22020 1.01337 0.95266 0.98277 1.21614 0.95430 0.97958 0.99366 1.21254 0.97629 0.82915 0.94752 0.92255 1.46045 1.08847 1.18603 1.62637 1.21050 0.82130 0.89029 0.77678 1.90719 1.48816 1.51148 1.55005 1.21662 0.99283 0.94193 0.97662 0.86638 1.21345 0.91891 0.98690 1.01971 1.21920 1.02062 0.96006 0.96268 1.22008 0.77878 1.03832 0.98138 1.47193 1.07173 1.19604 1.62089 1.16079 0.84160 0.80730 0.78811 1.42940 1.13128 1.26586 1.59159 1.90950 1.17790 1.79386 1.64222 1.21227 0.99683 0.86043 0.91365 1.21199 0.96343 0.86892 0.93595 0.93839 0.97950 0.92420 0.89881 0.93337 0.89594 0.90979 0.75139 0.91612 0.92183 0.87770 0.90652 0.90237 0.86985 0.75427 0.74643 0.91622 0.89372 0.96464 0.95034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.33 11.01 21.65 0.24 -56.09 16 2 C -0.04 -2.59 5.06 84.86 0.43 -2.16 16 3 Si 0.97 46.85 29.57 68.60 2.03 48.88 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.27 -15.84 9.59 84.03 0.81 -15.03 16 8 H 0.05 3.19 7.85 -2.91 -0.02 3.16 16 9 N -0.61 -32.61 2.99 -699.10 -2.09 -34.70 16 10 C 0.17 8.50 5.26 86.36 0.45 8.96 16 11 C -0.13 -4.85 6.08 30.67 0.19 -4.66 16 12 C -0.11 -3.33 5.36 30.62 0.16 -3.17 16 13 C 0.14 5.16 2.60 45.07 0.12 5.28 16 14 H 0.06 2.52 7.58 -2.39 -0.02 2.50 16 15 N -0.71 -20.32 4.99 -442.15 -2.20 -22.52 16 16 C 0.51 15.20 7.12 87.66 0.62 15.83 16 17 O -0.58 -22.61 15.64 -3.05 -0.05 -22.65 16 18 C -0.11 -2.14 2.68 -11.46 -0.03 -2.17 16 19 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 20 C -0.10 -1.78 4.46 30.62 0.14 -1.64 16 21 C -0.12 -1.12 6.08 30.68 0.19 -0.93 16 22 C 0.10 0.84 6.39 86.37 0.55 1.39 16 23 N -0.62 -9.93 2.97 -836.91 -2.49 -12.42 16 24 C 0.70 13.43 8.57 179.06 1.53 14.97 16 25 N -0.85 -7.62 8.78 -184.75 -1.62 -9.24 16 26 O -0.64 -18.89 16.60 -4.01 -0.07 -18.95 16 27 C 0.14 2.90 5.58 86.36 0.48 3.38 16 28 C 0.15 6.74 6.09 86.36 0.53 7.26 16 29 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 30 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.06 3.23 6.06 -2.39 -0.01 3.21 16 32 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.41 9.33 8.14 -92.71 -0.76 8.57 16 37 H 0.07 1.31 8.07 -2.39 -0.02 1.29 16 38 H 0.06 1.24 8.13 -2.39 -0.02 1.23 16 39 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.11 0.13 5.64 -2.39 -0.01 0.12 16 43 H 0.41 0.83 6.32 -92.71 -0.59 0.24 16 44 H 0.42 3.08 8.93 -92.71 -0.83 2.25 16 45 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.09 2.05 6.59 -2.38 -0.02 2.04 16 47 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.03 1.57 7.93 -2.39 -0.02 1.55 16 Total: -1.00 -81.98 373.90 -1.26 -83.23 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -1.17 Total: 17.15 kcal Atomic # 6 Polarization: 21.15 SS G_CDS: 6.17 Total: 27.31 kcal Atomic # 7 Polarization: -126.81 SS G_CDS: -8.17 Total: -134.97 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -0.11 Total: -41.61 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -81.98 -1.26 -83.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007863253.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.072 kcal (2) G-P(sol) polarization free energy of solvation -81.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds