Wall clock time and date at job start Fri Apr 10 2020 18:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00540 * 2 1 4 4 H 1.48492 * 109.47032 * 270.00317 * 3 2 1 5 5 H 1.48504 * 109.46856 * 30.00269 * 3 2 1 6 6 H 1.48496 * 109.47329 * 149.99798 * 3 2 1 7 7 C 1.38820 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99605 * 190.42455 * 7 2 1 9 9 N 1.36939 * 119.99851 * 10.43025 * 7 2 1 10 10 C 1.46924 * 120.62533 * 210.96648 * 9 7 2 11 11 C 1.53194 * 108.77215 * 233.62496 * 10 9 7 12 12 C 1.53040 * 109.31470 * 305.37001 * 11 10 9 13 13 C 1.53039 * 109.54058 * 61.36257 * 12 11 10 14 14 H 1.09004 * 109.52237 * 58.60145 * 13 12 11 15 15 N 1.46494 * 109.49755 * 178.68108 * 13 12 11 16 16 C 1.34781 * 120.00010 * 204.83457 * 15 13 12 17 17 O 1.21274 * 119.99641 * 359.73534 * 16 15 13 18 18 C 1.50695 * 119.99796 * 180.02562 * 16 15 13 19 19 C 1.53042 * 109.46459 * 300.02960 * 18 16 15 20 20 C 1.53191 * 109.31700 * 178.60289 * 19 18 16 21 21 N 1.46929 * 108.76495 * 54.65643 * 20 19 18 22 22 C 1.34770 * 120.63055 * 126.36228 * 21 20 19 23 23 N 1.34773 * 120.00010 * 5.20998 * 22 21 20 24 24 O 1.21590 * 119.99797 * 185.21100 * 22 21 20 25 25 C 1.46929 * 118.73529 * 306.38827 * 21 20 19 26 26 C 1.53042 * 109.45645 * 179.97438 * 18 16 15 27 27 C 1.46928 * 120.63135 * 30.98575 * 9 7 2 28 28 H 0.97000 * 119.99365 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.58970 * 353.41261 * 10 9 7 30 30 H 1.09005 * 109.58329 * 113.84468 * 10 9 7 31 31 H 1.08996 * 109.49542 * 65.32336 * 11 10 9 32 32 H 1.08997 * 109.49682 * 185.38567 * 11 10 9 33 33 H 1.09002 * 109.46022 * 301.33942 * 12 11 10 34 34 H 1.09000 * 109.46107 * 181.38507 * 12 11 10 35 35 H 0.97004 * 120.00250 * 24.84680 * 15 13 12 36 36 H 1.08993 * 109.46517 * 60.00699 * 18 16 15 37 37 H 1.08998 * 109.49648 * 298.57368 * 19 18 16 38 38 H 1.09005 * 109.49322 * 58.66426 * 19 18 16 39 39 H 1.09001 * 109.59797 * 294.87057 * 20 19 18 40 40 H 1.09000 * 109.58623 * 174.43566 * 20 19 18 41 41 H 0.96996 * 120.00058 * 354.81271 * 23 22 21 42 42 H 0.97001 * 120.00008 * 174.81918 * 23 22 21 43 43 H 1.09000 * 109.58518 * 293.81366 * 25 21 20 44 44 H 1.09003 * 109.58336 * 173.39920 * 25 21 20 45 45 H 1.08992 * 109.50353 * 301.33833 * 26 18 16 46 46 H 1.09004 * 109.49919 * 61.44296 * 26 18 16 47 47 H 1.08996 * 109.58577 * 6.58202 * 27 9 7 48 48 H 1.09004 * 109.70266 * 246.23121 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0768 -1.2100 0.1687 9 7 1.3424 -2.3782 -0.2158 10 6 1.8065 -3.6268 0.4042 11 6 1.9870 -4.6833 -0.6903 12 6 0.6839 -4.8206 -1.4811 13 6 0.3476 -3.4855 -2.1493 14 1 1.1654 -3.1913 -2.8073 15 7 -0.8829 -3.6265 -2.9316 16 6 -1.1167 -2.8047 -3.9739 17 8 -0.3106 -1.9453 -4.2612 18 6 -2.3829 -2.9494 -4.7782 19 6 -2.4403 -4.3505 -5.3911 20 6 -3.7449 -4.5059 -6.1790 21 7 -3.8382 -3.4148 -7.1586 22 6 -4.0420 -3.6797 -8.4642 23 7 -4.2669 -4.9458 -8.8677 24 8 -4.0229 -2.7765 -9.2780 25 6 -3.7045 -2.0294 -6.6877 26 6 -2.4006 -1.9019 -5.8938 27 6 0.1486 -2.4154 -1.0714 28 1 -0.4849 0.8401 0.0004 29 1 2.7587 -3.4539 0.9057 30 1 1.0676 -3.9723 1.1273 31 1 2.7896 -4.3782 -1.3616 32 1 2.2386 -5.6406 -0.2339 33 1 -0.1234 -5.1018 -0.8048 34 1 0.8019 -5.5894 -2.2448 35 1 -1.5295 -4.3113 -2.6993 36 1 -3.2451 -2.8018 -4.1280 37 1 -1.5917 -4.4897 -6.0609 38 1 -2.4040 -5.0966 -4.5972 39 1 -4.5927 -4.4569 -5.4957 40 1 -3.7462 -5.4642 -6.6983 41 1 -4.2077 -5.6754 -8.2314 42 1 -4.4879 -5.1274 -9.7946 43 1 -4.5491 -1.7785 -6.0460 44 1 -3.6794 -1.3538 -7.5428 45 1 -2.3360 -0.9050 -5.4580 46 1 -1.5525 -2.0644 -6.5590 47 1 0.0069 -1.4432 -1.5433 48 1 -0.7269 -2.6608 -0.4701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009466224.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:02 Heat of formation + Delta-G solvation = -49.759223 kcal Electronic energy + Delta-G solvation = -28638.643172 eV Core-core repulsion = 24728.665040 eV Total energy + Delta-G solvation = -3909.978132 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.70958 -39.56816 -37.70139 -36.82367 -34.24778 -34.11672 -32.88449 -32.46227 -31.12101 -30.02164 -28.87481 -26.08792 -25.26793 -23.54479 -22.66987 -22.11112 -21.43580 -20.07557 -19.69368 -19.27330 -18.59801 -17.20465 -16.78239 -16.73800 -15.71540 -15.62385 -15.23541 -14.99323 -14.61111 -14.44722 -14.03969 -13.99621 -13.76073 -13.58345 -13.39472 -13.08910 -12.88682 -12.61033 -12.38857 -12.29732 -11.99966 -11.74622 -11.54226 -10.98216 -10.91772 -10.82035 -10.74534 -10.70945 -10.50422 -10.39315 -10.23926 -9.97570 -9.97330 -9.94170 -9.52547 -9.30673 -8.84964 -8.52417 -8.42010 -6.60426 -5.73983 -3.23141 2.52361 2.94617 3.04200 3.42785 3.49127 3.49850 3.53674 3.79850 4.40030 4.49151 4.53948 4.64389 4.88807 5.03577 5.08095 5.21344 5.27554 5.36622 5.40851 5.44989 5.50560 5.55320 5.61996 5.66823 5.69424 5.82443 5.91691 6.08571 6.13391 6.22041 6.26023 6.33720 6.41450 6.50966 6.52358 6.63476 6.70275 6.77781 6.95180 6.97631 7.32574 7.57282 7.77159 7.83894 7.95565 8.35755 8.51799 8.68483 9.25173 9.86990 10.42921 11.33224 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017070 B = 0.003045 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.942346 B = 9193.253821 C =10442.545975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.007 3.993 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.116 3.884 14 H 0.080 0.920 15 N -0.721 5.721 16 C 0.513 3.487 17 O -0.529 6.529 18 C -0.106 4.106 19 C -0.126 4.126 20 C 0.114 3.886 21 N -0.627 5.627 22 C 0.709 3.291 23 N -0.870 5.870 24 O -0.594 6.594 25 C 0.128 3.872 26 C -0.115 4.115 27 C 0.168 3.832 28 H 0.253 0.747 29 H 0.055 0.945 30 H 0.018 0.982 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.390 0.610 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.395 0.605 42 H 0.413 0.587 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.097 0.903 48 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.299 -15.634 -10.866 21.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.192 4.192 3 Si 0.735 3.265 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.153 4.153 13 C 0.010 3.990 14 H 0.098 0.902 15 N -0.371 5.371 16 C 0.297 3.703 17 O -0.404 6.404 18 C -0.128 4.128 19 C -0.165 4.165 20 C -0.010 4.010 21 N -0.366 5.366 22 C 0.409 3.591 23 N -0.440 5.440 24 O -0.472 6.472 25 C 0.005 3.995 26 C -0.154 4.154 27 C 0.041 3.959 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.223 0.777 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.226 0.774 42 H 0.244 0.756 43 H 0.087 0.913 44 H 0.116 0.884 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.115 0.885 48 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -9.752 -14.116 -11.448 20.626 hybrid contribution 0.006 -0.100 0.208 0.231 sum -9.746 -14.217 -11.241 20.578 Atomic orbital electron populations 1.69954 1.05305 1.25454 1.53862 1.25151 0.95424 0.98466 1.00125 0.86251 0.78963 0.83490 0.77811 1.21236 1.21678 1.20422 1.19152 0.90816 0.83859 1.44722 0.91751 1.43940 1.31346 1.03648 1.52259 1.20964 0.97780 0.87056 0.92619 1.22004 0.96637 0.99227 0.99256 1.21664 0.98649 0.96288 0.98696 1.21980 0.85762 0.97020 0.94200 0.90223 1.46088 1.23501 1.36101 1.31415 1.20388 0.87758 0.81488 0.80619 1.90752 1.47386 1.33425 1.68881 1.21314 0.97482 0.96537 0.97435 1.21922 0.98221 0.96140 1.00171 1.21650 0.98129 0.89606 0.91594 1.47314 1.76040 1.07954 1.05281 1.15860 0.77462 0.83370 0.82433 1.43168 1.78715 1.07060 1.15092 1.90964 1.59278 1.44918 1.52044 1.21600 0.97258 0.81340 0.99305 1.21754 0.97696 0.99585 0.96327 1.21104 0.88085 0.97734 0.88981 0.93652 0.92661 0.96435 0.92198 0.92705 0.92341 0.93264 0.77700 0.88351 0.90771 0.90014 0.90706 0.90331 0.77440 0.75568 0.91311 0.88443 0.89372 0.90713 0.88531 0.96659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 11.01 55.49 0.61 -26.15 16 2 C 0.01 0.21 5.06 -17.43 -0.09 0.12 16 3 Si 0.91 22.53 29.57 -169.99 -5.03 17.51 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.26 -7.19 9.59 -15.06 -0.14 -7.33 16 8 H 0.06 1.77 7.85 -52.49 -0.41 1.36 16 9 N -0.59 -14.92 2.99 -172.32 -0.51 -15.44 16 10 C 0.14 2.93 6.52 -3.71 -0.02 2.90 16 11 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 12 C -0.11 -1.78 5.35 -26.69 -0.14 -1.92 16 13 C 0.12 2.19 2.60 -67.82 -0.18 2.02 16 14 H 0.08 1.76 7.58 -51.93 -0.39 1.36 16 15 N -0.72 -10.88 4.97 -53.70 -0.27 -11.14 16 16 C 0.51 8.32 7.12 -10.99 -0.08 8.24 16 17 O -0.53 -11.47 15.64 5.56 0.09 -11.38 16 18 C -0.11 -1.18 2.49 -91.73 -0.23 -1.41 16 19 C -0.13 -0.99 5.27 -26.61 -0.14 -1.13 16 20 C 0.11 0.70 6.39 -3.71 -0.02 0.68 16 21 N -0.63 -5.95 2.97 -178.50 -0.53 -6.48 16 22 C 0.71 7.89 8.57 -86.93 -0.75 7.15 16 23 N -0.87 -5.68 8.78 27.63 0.24 -5.44 16 24 O -0.59 -9.35 16.60 5.29 0.09 -9.26 16 25 C 0.13 1.34 6.44 -3.71 -0.02 1.32 16 26 C -0.11 -1.40 4.65 -26.61 -0.12 -1.52 16 27 C 0.17 4.04 4.83 -3.71 -0.02 4.02 16 28 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.39 4.40 8.00 -40.82 -0.33 4.07 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.48 7.53 -51.93 -0.39 0.09 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.29 5.64 -51.93 -0.29 -0.01 16 41 H 0.40 1.43 6.32 -40.82 -0.26 1.17 16 42 H 0.41 2.24 8.93 -40.82 -0.36 1.87 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.10 1.18 6.99 -51.93 -0.36 0.81 16 45 H 0.09 1.19 8.06 -51.93 -0.42 0.77 16 46 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 47 H 0.10 2.77 6.06 -51.93 -0.31 2.45 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 373.57 15.07 5.63 5.63 Total: -1.00 -37.08 373.57 -9.53 -46.61 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -7.73 Total: 4.77 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: -2.12 Total: 10.78 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: -0.46 Total: -64.65 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: 0.17 Total: -20.64 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.08 -9.53 -46.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009466224.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.153 kcal (2) G-P(sol) polarization free energy of solvation -37.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds