Wall clock time and date at job start Fri Apr 10 2020 18:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99901 * 2 1 4 4 H 1.48494 * 109.46834 * 239.99563 * 3 2 1 5 5 H 1.48495 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47010 * 120.00064 * 3 2 1 7 7 C 1.38814 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99721 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00060 * 0.02562 * 7 2 1 10 10 C 1.47421 * 125.64670 * 2.24176 * 9 7 2 11 11 C 1.54916 * 104.82987 * 204.16393 * 10 9 7 12 12 C 1.55406 * 101.66342 * 323.07439 * 11 10 9 13 13 C 1.47016 * 125.64636 * 182.27949 * 9 7 2 14 14 H 1.09003 * 109.88159 * 59.33376 * 13 9 7 15 15 C 1.52998 * 109.88620 * 298.32419 * 13 9 7 16 16 N 1.46499 * 109.47621 * 176.26284 * 15 13 9 17 17 C 1.34767 * 120.00225 * 184.95238 * 16 15 13 18 18 O 1.21284 * 120.00438 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00208 * 180.02562 * 17 16 15 20 20 H 1.09006 * 109.49666 * 299.99640 * 19 17 16 21 21 C 1.53039 * 109.52993 * 179.91601 * 19 17 16 22 22 C 1.53042 * 109.54430 * 178.66448 * 21 19 17 23 23 C 1.53192 * 109.30979 * 61.36111 * 22 21 19 24 24 N 1.46921 * 108.78039 * 305.36872 * 23 22 21 25 25 C 1.34775 * 120.63293 * 233.58756 * 24 23 22 26 26 N 1.34774 * 119.99956 * 355.38802 * 25 24 23 27 27 O 1.21581 * 119.99980 * 175.39600 * 25 24 23 28 28 C 1.46929 * 118.73738 * 53.60657 * 24 23 22 29 29 H 0.96999 * 119.99345 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.36930 * 322.99923 * 10 9 7 31 31 H 1.08997 * 110.36888 * 85.21532 * 10 9 7 32 32 H 1.09000 * 111.00352 * 81.06187 * 11 10 9 33 33 H 1.08997 * 111.00201 * 204.91986 * 11 10 9 34 34 H 1.09000 * 110.69623 * 277.04804 * 12 11 10 35 35 H 1.09000 * 110.85375 * 153.69649 * 12 11 10 36 36 H 1.09003 * 109.47322 * 56.26133 * 15 13 9 37 37 H 1.09001 * 109.46963 * 296.26442 * 15 13 9 38 38 H 0.97005 * 119.99596 * 4.95052 * 16 15 13 39 39 H 1.08999 * 109.46257 * 298.68867 * 21 19 17 40 40 H 1.09002 * 109.45607 * 58.64411 * 21 19 17 41 41 H 1.09002 * 109.49507 * 301.41353 * 22 21 19 42 42 H 1.08997 * 109.52836 * 181.33284 * 22 21 19 43 43 H 1.09001 * 109.58500 * 185.57471 * 23 22 21 44 44 H 1.09006 * 109.70031 * 65.22890 * 23 22 21 45 45 H 0.97006 * 120.00008 * 4.98773 * 26 25 24 46 46 H 0.96994 * 120.00552 * 184.97459 * 26 25 24 47 47 H 1.09001 * 109.58899 * 186.60217 * 28 24 23 48 48 H 1.08998 * 109.70382 * 66.24862 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1408 -2.5336 -0.0469 11 6 -0.4223 -3.9199 0.5844 12 6 0.7791 -4.7541 0.0592 13 6 1.9309 -3.7270 0.0486 14 1 2.5289 -3.8311 0.9540 15 6 2.8109 -3.9448 -1.1839 16 7 3.4792 -5.2445 -1.0833 17 6 4.3859 -5.6097 -2.0112 18 8 4.6482 -4.8625 -2.9298 19 6 5.0729 -6.9469 -1.9080 20 1 5.6219 -7.0024 -0.9679 21 6 6.0454 -7.1140 -3.0778 22 6 6.7677 -8.4577 -2.9552 23 6 5.7403 -9.5924 -3.0147 24 7 4.7189 -9.3601 -1.9844 25 6 4.4226 -10.3173 -1.0831 26 7 4.9970 -11.5329 -1.1775 27 8 3.6369 -10.0843 -0.1850 28 6 4.0264 -8.0646 -1.9557 29 1 -0.4849 0.8401 0.0004 30 1 -0.6191 -1.7469 0.5366 31 1 -0.4915 -2.5063 -1.0785 32 1 -0.4100 -3.8634 1.6729 33 1 -1.3677 -4.3274 0.2265 34 1 0.5816 -5.1225 -0.9474 35 1 1.0042 -5.5788 0.7356 36 1 3.5596 -3.1546 -1.2400 37 1 2.1918 -3.9230 -2.0808 38 1 3.2692 -5.8423 -0.3488 39 1 5.4927 -7.0832 -4.0168 40 1 6.7766 -6.3058 -3.0604 41 1 7.3007 -8.4988 -2.0052 42 1 7.4774 -8.5660 -3.7754 43 1 6.2367 -10.5449 -2.8290 44 1 5.2700 -9.6111 -3.9979 45 1 5.6773 -11.6970 -1.8493 46 1 4.7305 -12.2435 -0.5736 47 1 3.3918 -8.0090 -1.0711 48 1 3.4151 -7.9547 -2.8513 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028009101.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:50 Heat of formation + Delta-G solvation = -42.879738 kcal Electronic energy + Delta-G solvation = -28368.188995 eV Core-core repulsion = 24458.509180 eV Total energy + Delta-G solvation = -3909.679815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.84775 -39.56123 -37.79419 -37.13752 -34.33865 -34.28153 -32.64748 -32.47571 -31.60301 -29.60886 -28.51392 -25.76113 -25.13306 -24.47003 -23.42691 -21.82780 -20.46502 -20.04583 -19.78675 -19.34235 -18.79284 -17.41866 -17.03433 -16.48769 -15.95235 -15.79466 -15.23694 -15.15173 -14.90448 -14.58853 -14.28282 -14.12274 -13.79414 -13.67831 -13.61046 -13.30338 -12.97374 -12.73446 -12.03221 -11.92502 -11.78233 -11.67134 -11.39355 -11.33225 -11.25113 -10.99756 -10.91653 -10.76619 -10.50353 -10.17342 -10.12439 -10.03735 -9.88143 -9.83236 -9.59618 -9.46687 -8.97246 -8.71523 -8.60445 -6.88244 -5.63696 -3.08526 2.35242 2.80360 2.91587 3.39479 3.43760 3.46995 3.48787 3.71937 4.34825 4.41872 4.50936 4.53668 4.67451 4.83987 4.93802 5.09526 5.25047 5.34477 5.36688 5.43562 5.46932 5.48928 5.56491 5.61770 5.65570 5.86172 5.88625 6.00645 6.05989 6.07030 6.17634 6.28927 6.39236 6.51173 6.55590 6.56356 6.65255 6.74802 6.82594 7.07702 7.48211 7.53569 7.65029 7.77219 7.87789 8.27715 8.38573 8.45296 9.22084 9.82579 10.45714 11.37892 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.019156 B = 0.002819 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.356555 B = 9930.975973 C =11069.175381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.590 5.590 10 C 0.146 3.854 11 C -0.145 4.145 12 C -0.129 4.129 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.108 3.892 16 N -0.720 5.720 17 C 0.514 3.486 18 O -0.540 6.540 19 C -0.123 4.123 20 H 0.100 0.900 21 C -0.100 4.100 22 C -0.135 4.135 23 C 0.109 3.891 24 N -0.626 5.626 25 C 0.709 3.291 26 N -0.869 5.869 27 O -0.589 6.589 28 C 0.139 3.861 29 H 0.253 0.747 30 H 0.113 0.887 31 H 0.010 0.990 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.397 0.603 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.395 0.605 46 H 0.414 0.586 47 H 0.101 0.899 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.443 -23.963 -4.877 27.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.314 5.314 10 C 0.021 3.979 11 C -0.184 4.184 12 C -0.167 4.167 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.018 4.018 16 N -0.371 5.371 17 C 0.298 3.702 18 O -0.417 6.417 19 C -0.146 4.146 20 H 0.118 0.882 21 C -0.138 4.138 22 C -0.173 4.173 23 C -0.014 4.014 24 N -0.364 5.364 25 C 0.409 3.591 26 N -0.439 5.439 27 O -0.467 6.467 28 C 0.015 3.985 29 H 0.064 0.936 30 H 0.130 0.870 31 H 0.028 0.972 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.231 0.769 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.226 0.774 46 H 0.246 0.754 47 H 0.119 0.881 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.996 -22.813 -4.996 25.813 hybrid contribution 0.752 0.140 0.107 0.772 sum 11.748 -22.673 -4.890 26.000 Atomic orbital electron populations 1.69757 1.04899 1.24885 1.57302 1.24787 0.95706 0.97757 1.02154 0.86146 0.78428 0.82950 0.77968 1.21115 1.21556 1.21124 1.19026 0.90504 0.82362 1.43436 0.90486 1.44512 1.02029 0.99004 1.85816 1.22079 0.84313 0.93535 0.97946 1.23020 0.96278 0.98886 1.00174 1.22684 0.96579 0.96974 1.00457 1.21088 0.92950 0.87481 0.94146 0.94379 1.22248 0.96147 0.82671 1.00697 1.46193 1.41880 1.20898 1.28167 1.20300 0.79692 0.87842 0.82342 1.90713 1.63538 1.54059 1.33360 1.21744 0.97952 0.92795 1.02063 0.88239 1.21318 0.98035 0.96836 0.97575 1.21957 0.97678 0.94676 1.03024 1.21707 0.89337 0.98546 0.91808 1.47211 1.41971 1.14898 1.32366 1.15844 0.80850 0.80751 0.81684 1.43161 1.46232 1.12543 1.41989 1.90988 1.39730 1.80674 1.35261 1.21410 0.93266 0.79563 1.04270 0.93641 0.86993 0.97170 0.92252 0.92472 0.91903 0.92225 0.91285 0.91994 0.76894 0.90776 0.90516 0.91298 0.90105 0.90470 0.90871 0.77439 0.75431 0.88091 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.83 10.05 55.49 0.56 -26.28 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.23 -6.24 9.79 -15.06 -0.15 -6.39 16 8 H 0.08 2.08 7.71 -52.49 -0.40 1.68 16 9 N -0.59 -14.87 3.13 -162.57 -0.51 -15.37 16 10 C 0.15 3.55 5.98 -2.53 -0.02 3.53 16 11 C -0.14 -2.77 7.09 -24.44 -0.17 -2.94 16 12 C -0.13 -2.22 6.04 -24.76 -0.15 -2.37 16 13 C 0.15 3.06 3.23 -66.96 -0.22 2.84 16 14 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 15 C 0.11 2.06 5.09 -4.04 -0.02 2.04 16 16 N -0.72 -10.76 5.30 -60.30 -0.32 -11.08 16 17 C 0.51 7.63 7.16 -10.99 -0.08 7.55 16 18 O -0.54 -10.23 15.98 5.55 0.09 -10.14 16 19 C -0.12 -1.30 2.67 -91.65 -0.25 -1.55 16 20 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 21 C -0.10 -0.92 4.46 -26.69 -0.12 -1.04 16 22 C -0.14 -0.79 6.08 -26.61 -0.16 -0.96 16 23 C 0.11 0.58 6.39 -3.71 -0.02 0.56 16 24 N -0.63 -5.37 2.97 -178.50 -0.53 -5.90 16 25 C 0.71 7.21 8.57 -86.92 -0.75 6.46 16 26 N -0.87 -4.92 8.78 27.63 0.24 -4.67 16 27 O -0.59 -8.69 16.59 5.29 0.09 -8.61 16 28 C 0.14 1.40 5.58 -3.71 -0.02 1.38 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 30 H 0.11 3.06 5.73 -51.93 -0.30 2.77 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.05 7.79 -51.93 -0.40 0.64 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.51 7.77 -51.93 -0.40 1.11 16 37 H 0.06 1.29 8.06 -51.93 -0.42 0.88 16 38 H 0.40 5.02 7.75 -40.82 -0.32 4.70 16 39 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 40 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.20 5.63 -51.93 -0.29 -0.09 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.40 1.07 6.31 -40.82 -0.26 0.81 16 46 H 0.41 1.94 8.93 -40.82 -0.36 1.57 16 47 H 0.10 1.15 6.59 -51.93 -0.34 0.80 16 48 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 375.51 15.07 5.66 5.66 Total: -1.00 -35.23 375.51 -9.66 -44.89 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -7.71 Total: 5.37 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -2.21 Total: 8.80 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -0.56 Total: -63.30 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.18 Total: -18.74 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.23 -9.66 -44.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028009101.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.010 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds