Wall clock time and date at job start Fri Apr 10 2020 18:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99901 * 2 1 4 4 H 1.48494 * 109.46834 * 239.99563 * 3 2 1 5 5 H 1.48495 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47010 * 120.00064 * 3 2 1 7 7 C 1.38814 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99721 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00060 * 0.02562 * 7 2 1 10 10 C 1.47421 * 125.64670 * 2.24176 * 9 7 2 11 11 C 1.54916 * 104.82987 * 204.16393 * 10 9 7 12 12 C 1.55406 * 101.66342 * 323.07439 * 11 10 9 13 13 C 1.47016 * 125.64636 * 182.27949 * 9 7 2 14 14 H 1.09003 * 109.88159 * 59.33376 * 13 9 7 15 15 C 1.52998 * 109.88620 * 298.32419 * 13 9 7 16 16 N 1.46499 * 109.47621 * 176.26284 * 15 13 9 17 17 C 1.34767 * 120.00225 * 184.95238 * 16 15 13 18 18 O 1.21284 * 120.00438 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00208 * 180.02562 * 17 16 15 20 20 H 1.09006 * 109.49666 * 299.99640 * 19 17 16 21 21 C 1.53039 * 109.52993 * 179.91601 * 19 17 16 22 22 C 1.53042 * 109.54430 * 178.66448 * 21 19 17 23 23 C 1.53192 * 109.30979 * 61.36111 * 22 21 19 24 24 N 1.46921 * 108.78039 * 305.36872 * 23 22 21 25 25 C 1.34775 * 120.63293 * 233.58756 * 24 23 22 26 26 N 1.34774 * 119.99956 * 355.38802 * 25 24 23 27 27 O 1.21581 * 119.99980 * 175.39600 * 25 24 23 28 28 C 1.46929 * 118.73738 * 53.60657 * 24 23 22 29 29 H 0.96999 * 119.99345 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.36930 * 322.99923 * 10 9 7 31 31 H 1.08997 * 110.36888 * 85.21532 * 10 9 7 32 32 H 1.09000 * 111.00352 * 81.06187 * 11 10 9 33 33 H 1.08997 * 111.00201 * 204.91986 * 11 10 9 34 34 H 1.09000 * 110.69623 * 277.04804 * 12 11 10 35 35 H 1.09000 * 110.85375 * 153.69649 * 12 11 10 36 36 H 1.09003 * 109.47322 * 56.26133 * 15 13 9 37 37 H 1.09001 * 109.46963 * 296.26442 * 15 13 9 38 38 H 0.97005 * 119.99596 * 4.95052 * 16 15 13 39 39 H 1.08999 * 109.46257 * 298.68867 * 21 19 17 40 40 H 1.09002 * 109.45607 * 58.64411 * 21 19 17 41 41 H 1.09002 * 109.49507 * 301.41353 * 22 21 19 42 42 H 1.08997 * 109.52836 * 181.33284 * 22 21 19 43 43 H 1.09001 * 109.58500 * 185.57471 * 23 22 21 44 44 H 1.09006 * 109.70031 * 65.22890 * 23 22 21 45 45 H 0.97006 * 120.00008 * 4.98773 * 26 25 24 46 46 H 0.96994 * 120.00552 * 184.97459 * 26 25 24 47 47 H 1.09001 * 109.58899 * 186.60217 * 28 24 23 48 48 H 1.08998 * 109.70382 * 66.24862 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1408 -2.5336 -0.0469 11 6 -0.4223 -3.9199 0.5844 12 6 0.7791 -4.7541 0.0592 13 6 1.9309 -3.7270 0.0486 14 1 2.5289 -3.8311 0.9540 15 6 2.8109 -3.9448 -1.1839 16 7 3.4792 -5.2445 -1.0833 17 6 4.3859 -5.6097 -2.0112 18 8 4.6482 -4.8625 -2.9298 19 6 5.0729 -6.9469 -1.9080 20 1 5.6219 -7.0024 -0.9679 21 6 6.0454 -7.1140 -3.0778 22 6 6.7677 -8.4577 -2.9552 23 6 5.7403 -9.5924 -3.0147 24 7 4.7189 -9.3601 -1.9844 25 6 4.4226 -10.3173 -1.0831 26 7 4.9970 -11.5329 -1.1775 27 8 3.6369 -10.0843 -0.1850 28 6 4.0264 -8.0646 -1.9557 29 1 -0.4849 0.8401 0.0004 30 1 -0.6191 -1.7469 0.5366 31 1 -0.4915 -2.5063 -1.0785 32 1 -0.4100 -3.8634 1.6729 33 1 -1.3677 -4.3274 0.2265 34 1 0.5816 -5.1225 -0.9474 35 1 1.0042 -5.5788 0.7356 36 1 3.5596 -3.1546 -1.2400 37 1 2.1918 -3.9230 -2.0808 38 1 3.2692 -5.8423 -0.3488 39 1 5.4927 -7.0832 -4.0168 40 1 6.7766 -6.3058 -3.0604 41 1 7.3007 -8.4988 -2.0052 42 1 7.4774 -8.5660 -3.7754 43 1 6.2367 -10.5449 -2.8290 44 1 5.2700 -9.6111 -3.9979 45 1 5.6773 -11.6970 -1.8493 46 1 4.7305 -12.2435 -0.5736 47 1 3.3918 -8.0090 -1.0711 48 1 3.4151 -7.9547 -2.8513 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028009101.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:49 Heat of formation + Delta-G solvation = -69.851020 kcal Electronic energy + Delta-G solvation = -28369.358558 eV Core-core repulsion = 24458.509180 eV Total energy + Delta-G solvation = -3910.849378 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.68386 -40.69786 -39.36212 -38.07654 -35.81436 -35.05067 -34.40591 -33.32098 -32.42700 -31.39736 -30.14051 -26.85419 -26.40922 -25.98150 -24.61523 -22.62242 -22.03263 -21.34998 -21.07361 -20.48227 -19.44312 -18.86414 -18.07703 -17.74486 -17.46053 -16.76290 -16.60913 -16.18322 -15.96295 -15.74087 -15.58985 -15.30917 -15.28808 -14.77452 -14.45405 -14.30428 -14.08268 -13.89674 -13.61490 -13.57936 -13.46173 -13.05319 -12.93470 -12.68736 -12.52614 -12.07628 -12.01178 -11.97019 -11.84757 -11.68367 -11.63593 -11.44941 -11.33133 -11.31183 -10.90520 -10.74863 -10.67419 -10.11573 -9.63631 -8.93162 -7.76887 -5.23840 1.44172 1.47306 1.48890 1.53404 1.80636 2.12835 2.18907 2.50197 3.23551 3.30194 3.57145 3.68335 3.77234 3.80789 3.94501 3.98227 4.03140 4.12403 4.22896 4.27291 4.41775 4.51233 4.53922 4.56059 4.70977 4.74839 4.75038 4.89317 4.94047 4.97765 5.04470 5.13222 5.17132 5.20085 5.32072 5.39271 5.42950 5.48300 5.52751 5.67770 5.83818 5.84819 6.04687 6.33301 6.53556 6.92554 7.10368 7.22134 7.63156 7.77405 8.39702 9.22393 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.019156 B = 0.002819 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.356555 B = 9930.975973 C =11069.175381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.064 4.064 3 Si 0.976 3.024 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.611 5.611 10 C 0.145 3.855 11 C -0.132 4.132 12 C -0.115 4.115 13 C 0.148 3.852 14 H 0.044 0.956 15 C 0.128 3.872 16 N -0.709 5.709 17 C 0.513 3.487 18 O -0.583 6.583 19 C -0.107 4.107 20 H 0.111 0.889 21 C -0.100 4.100 22 C -0.126 4.126 23 C 0.104 3.896 24 N -0.623 5.623 25 C 0.702 3.298 26 N -0.847 5.847 27 O -0.640 6.640 28 C 0.143 3.857 29 H 0.247 0.753 30 H 0.079 0.921 31 H -0.017 1.017 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.035 0.965 37 H 0.041 0.959 38 H 0.412 0.588 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.083 0.917 45 H 0.412 0.588 46 H 0.420 0.580 47 H 0.089 0.911 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.171 -27.149 -4.856 30.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.257 4.257 3 Si 0.804 3.196 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.365 4.365 8 H 0.094 0.906 9 N -0.335 5.335 10 C 0.020 3.980 11 C -0.170 4.170 12 C -0.153 4.153 13 C 0.041 3.959 14 H 0.062 0.938 15 C 0.002 3.998 16 N -0.361 5.361 17 C 0.300 3.700 18 O -0.463 6.463 19 C -0.130 4.130 20 H 0.129 0.871 21 C -0.138 4.138 22 C -0.164 4.164 23 C -0.017 4.017 24 N -0.361 5.361 25 C 0.402 3.598 26 N -0.419 5.419 27 O -0.522 6.522 28 C 0.018 3.982 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.001 0.999 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.117 0.883 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.249 0.751 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.123 0.877 43 H 0.129 0.871 44 H 0.101 0.899 45 H 0.246 0.754 46 H 0.253 0.747 47 H 0.108 0.892 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.783 -26.092 -4.987 29.480 hybrid contribution 0.268 1.084 0.050 1.118 sum 13.051 -25.008 -4.936 28.638 Atomic orbital electron populations 1.70010 1.06048 1.25002 1.58463 1.25583 0.96604 1.00820 1.02697 0.85192 0.77219 0.79117 0.78070 1.21000 1.21676 1.20107 1.19318 0.90771 0.83803 1.42570 0.90634 1.44766 1.02716 1.00255 1.85807 1.21893 0.83929 0.95983 0.96216 1.22884 0.98290 0.95688 1.00152 1.22661 0.94037 0.96735 1.01844 1.21277 0.94207 0.86197 0.94262 0.93815 1.21676 0.94903 0.83873 0.99372 1.45983 1.41691 1.19491 1.28938 1.21094 0.78877 0.88959 0.81102 1.90696 1.64780 1.55762 1.35055 1.21677 0.97970 0.90007 1.03329 0.87134 1.21341 0.97442 0.98677 0.96378 1.21922 0.97772 0.92463 1.04205 1.21994 0.88560 0.99855 0.91336 1.47193 1.42314 1.13870 1.32691 1.16077 0.80631 0.81812 0.81278 1.42951 1.45700 1.11092 1.42131 1.90951 1.42102 1.81743 1.37424 1.21233 0.92975 0.80301 1.03700 0.94290 0.90307 0.99917 0.91679 0.89934 0.91184 0.88347 0.94643 0.94105 0.75096 0.91700 0.92007 0.90980 0.87738 0.87116 0.89876 0.75449 0.74663 0.89244 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.22 10.05 21.65 0.22 -57.00 16 2 C -0.06 -3.73 5.49 84.86 0.47 -3.27 16 3 Si 0.98 47.07 29.55 68.60 2.03 49.09 16 4 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.24 -13.45 9.79 84.03 0.82 -12.63 16 8 H 0.08 4.21 7.71 -2.91 -0.02 4.19 16 9 N -0.61 -31.59 3.13 -668.26 -2.09 -33.68 16 10 C 0.14 7.23 5.98 86.86 0.52 7.75 16 11 C -0.13 -4.85 7.09 32.08 0.23 -4.62 16 12 C -0.12 -3.72 6.04 31.87 0.19 -3.53 16 13 C 0.15 5.93 3.23 45.34 0.15 6.08 16 14 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 15 C 0.13 5.04 5.09 86.38 0.44 5.47 16 16 N -0.71 -20.93 5.30 -463.08 -2.45 -23.38 16 17 C 0.51 15.18 7.16 87.66 0.63 15.81 16 18 O -0.58 -22.65 15.98 -3.04 -0.05 -22.70 16 19 C -0.11 -2.14 2.67 -11.46 -0.03 -2.17 16 20 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 21 C -0.10 -1.70 4.46 30.62 0.14 -1.56 16 22 C -0.13 -1.05 6.08 30.67 0.19 -0.87 16 23 C 0.10 0.71 6.39 86.36 0.55 1.26 16 24 N -0.62 -9.03 2.97 -836.92 -2.49 -11.51 16 25 C 0.70 12.59 8.57 179.06 1.54 14.12 16 26 N -0.85 -6.83 8.78 -184.76 -1.62 -8.45 16 27 O -0.64 -18.05 16.59 -3.97 -0.07 -18.12 16 28 C 0.14 2.65 5.58 86.36 0.48 3.14 16 29 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.08 4.49 5.73 -2.39 -0.01 4.48 16 31 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 32 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.07 2.19 7.79 -2.39 -0.02 2.17 16 35 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.04 1.62 7.77 -2.39 -0.02 1.60 16 37 H 0.04 1.77 8.06 -2.39 -0.02 1.75 16 38 H 0.41 9.79 7.75 -92.70 -0.72 9.07 16 39 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 40 H 0.06 1.24 8.07 -2.39 -0.02 1.22 16 41 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.11 0.02 5.63 -2.39 -0.01 0.01 16 44 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 45 H 0.41 0.46 6.31 -92.70 -0.59 -0.12 16 46 H 0.42 2.73 8.93 -92.71 -0.83 1.90 16 47 H 0.09 1.91 6.59 -2.39 -0.02 1.89 16 48 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -81.32 375.51 -1.36 -82.67 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -1.14 Total: 18.08 kcal Atomic # 6 Polarization: 18.69 SS G_CDS: 6.30 Total: 24.99 kcal Atomic # 7 Polarization: -125.59 SS G_CDS: -8.44 Total: -134.03 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -0.11 Total: -40.82 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.09 kcal Total: -81.32 -1.36 -82.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028009101.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.823 kcal (2) G-P(sol) polarization free energy of solvation -81.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds