Wall clock time and date at job start Fri Apr 10 2020 18:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00129 * 2 1 4 4 H 1.48505 * 109.46791 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46790 * 299.99284 * 3 2 1 6 6 H 1.48495 * 109.47237 * 59.99809 * 3 2 1 7 7 C 1.38815 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99915 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00185 * 0.02562 * 7 2 1 10 10 C 1.47748 * 125.82249 * 356.94845 * 9 7 2 11 11 C 1.54902 * 104.84384 * 204.24800 * 10 9 7 12 12 C 1.55154 * 101.58158 * 322.90637 * 11 10 9 13 13 C 1.47025 * 125.65110 * 176.94554 * 9 7 2 14 14 H 1.08995 * 109.87752 * 59.32654 * 13 9 7 15 15 C 1.53004 * 109.88077 * 298.31741 * 13 9 7 16 16 N 1.46498 * 109.46586 * 174.26979 * 15 13 9 17 17 C 1.34779 * 119.99928 * 174.92050 * 16 15 13 18 18 O 1.21283 * 119.99737 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00369 * 179.97438 * 17 16 15 20 20 H 1.08996 * 109.69726 * 2.62930 * 19 17 16 21 21 C 1.53185 * 109.58813 * 242.27384 * 19 17 16 22 22 C 1.53044 * 109.34057 * 185.56084 * 21 19 17 23 23 C 1.53105 * 109.50194 * 61.34696 * 22 21 19 24 24 C 1.53194 * 109.33206 * 298.66087 * 23 22 21 25 25 N 1.46919 * 108.77587 * 54.63430 * 24 23 22 26 26 C 1.34778 * 120.62916 * 126.37740 * 25 24 23 27 27 N 1.34768 * 120.00469 * 4.81396 * 26 25 24 28 28 O 1.21594 * 119.99961 * 184.82214 * 26 25 24 29 29 H 0.97002 * 120.00053 * 0.02562 * 1 2 3 30 30 H 1.09008 * 110.43330 * 85.36910 * 10 9 7 31 31 H 1.08998 * 110.38574 * 323.10439 * 10 9 7 32 32 H 1.09005 * 111.00569 * 204.83478 * 11 10 9 33 33 H 1.08995 * 111.04045 * 80.99431 * 11 10 9 34 34 H 1.09002 * 110.72115 * 277.13534 * 12 11 10 35 35 H 1.09002 * 110.72436 * 153.86453 * 12 11 10 36 36 H 1.09003 * 109.47092 * 54.27353 * 15 13 9 37 37 H 1.08997 * 109.46926 * 294.26792 * 15 13 9 38 38 H 0.96996 * 120.00381 * 354.91757 * 16 15 13 39 39 H 1.09004 * 109.49780 * 305.52875 * 21 19 17 40 40 H 1.09000 * 109.49955 * 65.59118 * 21 19 17 41 41 H 1.08996 * 109.46062 * 181.40007 * 22 21 19 42 42 H 1.08994 * 109.46099 * 301.36124 * 22 21 19 43 43 H 1.08998 * 109.49206 * 178.70147 * 23 22 21 44 44 H 1.09000 * 109.51709 * 58.62939 * 23 22 21 45 45 H 1.09001 * 109.58410 * 294.84665 * 24 23 22 46 46 H 1.08995 * 109.58866 * 174.42430 * 24 23 22 47 47 H 0.97001 * 119.99649 * 5.18744 * 27 26 25 48 48 H 0.96999 * 120.00787 * 185.18295 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1430 -2.5388 0.0638 11 6 -0.3717 -3.9531 0.6527 12 6 0.7811 -4.7553 -0.0068 13 6 1.9302 -3.7267 -0.0626 14 1 2.5990 -3.8717 0.7858 15 6 2.7075 -3.8854 -1.3708 16 7 3.4177 -5.1667 -1.3645 17 6 4.0896 -5.5702 -2.4609 18 8 4.1060 -4.8726 -3.4530 19 6 4.8206 -6.8880 -2.4543 20 1 4.6571 -7.3940 -1.5029 21 6 6.3196 -6.6448 -2.6556 22 6 7.0382 -7.9896 -2.7868 23 6 6.5012 -8.7389 -4.0093 24 6 5.0042 -9.0058 -3.8234 25 7 4.3267 -7.7307 -3.5519 26 6 3.2723 -7.3414 -4.2956 27 7 2.7691 -8.1662 -5.2352 28 8 2.7751 -6.2459 -4.1191 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5760 -2.4687 -0.9341 31 1 -0.5746 -1.7811 0.7178 32 1 -1.3430 -4.3481 0.3545 33 1 -0.2717 -3.9460 1.7380 34 1 0.5023 -5.0770 -1.0102 35 1 1.0583 -5.6101 0.6102 36 1 3.4267 -3.0719 -1.4671 37 1 2.0139 -3.8585 -2.2112 38 1 3.4043 -5.7247 -0.5712 39 1 6.4747 -6.0594 -3.5620 40 1 6.7183 -6.1013 -1.7990 41 1 8.1082 -7.8196 -2.9052 42 1 6.8622 -8.5844 -1.8905 43 1 7.0292 -9.6865 -4.1160 44 1 6.6546 -8.1343 -4.9033 45 1 4.8557 -9.6846 -2.9837 46 1 4.5967 -9.4500 -4.7315 47 1 3.1161 -9.0675 -5.3255 48 1 2.0598 -7.8586 -5.8211 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028254551.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:11 Heat of formation + Delta-G solvation = -19.949460 kcal Electronic energy + Delta-G solvation = -29162.960445 eV Core-core repulsion = 25254.274961 eV Total energy + Delta-G solvation = -3908.685484 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.94606 -38.59361 -37.57746 -37.21665 -34.08763 -33.74948 -32.58950 -32.37218 -31.42223 -29.55196 -28.47551 -25.97772 -24.79952 -24.21032 -23.21787 -21.70179 -20.50516 -20.04016 -19.70468 -19.32247 -18.37693 -17.06697 -16.78948 -16.18802 -15.83534 -15.37593 -15.22916 -14.81391 -14.72032 -14.46778 -14.23152 -13.99185 -13.78316 -13.49201 -13.47088 -13.16958 -12.78621 -12.48068 -11.89654 -11.80123 -11.76439 -11.56643 -11.45754 -11.19311 -11.19091 -11.01287 -10.89650 -10.73868 -10.15259 -10.01370 -9.83882 -9.74477 -9.71782 -9.48655 -9.46416 -9.10295 -8.78677 -8.56930 -8.18706 -6.79726 -5.61015 -3.00527 2.42351 3.13395 3.45105 3.48830 3.51879 3.54043 3.62768 4.07562 4.40330 4.48648 4.55325 4.59320 4.77813 4.90293 5.03522 5.09240 5.19906 5.39596 5.45700 5.49365 5.53360 5.54281 5.64736 5.70914 5.74767 5.76230 5.94202 6.05664 6.18344 6.23057 6.29672 6.38327 6.57789 6.59201 6.72765 6.78236 6.86013 6.91358 7.04994 7.26381 7.63364 7.69909 7.76285 7.91939 8.09359 8.39685 8.62151 8.97365 9.27532 9.88666 10.53799 11.45326 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017922 B = 0.003208 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.980339 B = 8726.652696 C = 9326.133297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.222 4.222 8 H 0.078 0.922 9 N -0.591 5.591 10 C 0.157 3.843 11 C -0.147 4.147 12 C -0.124 4.124 13 C 0.153 3.847 14 H 0.035 0.965 15 C 0.118 3.882 16 N -0.725 5.725 17 C 0.521 3.479 18 O -0.504 6.504 19 C 0.148 3.852 20 H 0.083 0.917 21 C -0.125 4.125 22 C -0.116 4.116 23 C -0.137 4.137 24 C 0.115 3.885 25 N -0.621 5.621 26 C 0.693 3.307 27 N -0.871 5.871 28 O -0.538 6.538 29 H 0.251 0.749 30 H 0.015 0.985 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.388 0.612 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.390 0.610 48 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.835 -24.614 -5.110 27.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.350 4.350 8 H 0.096 0.904 9 N -0.315 5.315 10 C 0.033 3.967 11 C -0.186 4.186 12 C -0.162 4.162 13 C 0.045 3.955 14 H 0.053 0.947 15 C -0.007 4.007 16 N -0.377 5.377 17 C 0.304 3.696 18 O -0.377 6.377 19 C 0.040 3.960 20 H 0.101 0.899 21 C -0.164 4.164 22 C -0.154 4.154 23 C -0.176 4.176 24 C -0.009 4.009 25 N -0.362 5.362 26 C 0.393 3.607 27 N -0.442 5.442 28 O -0.411 6.411 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.221 0.779 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.097 0.903 47 H 0.219 0.781 48 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 10.543 -23.009 -5.601 25.922 hybrid contribution 0.363 0.056 -0.146 0.395 sum 10.906 -22.953 -5.747 26.054 Atomic orbital electron populations 1.69877 1.04899 1.24703 1.57385 1.24786 0.95714 0.97708 1.02308 0.86018 0.78758 0.83703 0.77164 1.20484 1.21739 1.21817 1.19104 0.90525 0.82325 1.43077 0.90388 1.44603 1.02089 0.99259 1.85567 1.21862 0.84125 0.92163 0.98557 1.22990 0.96683 0.99327 0.99567 1.22596 0.96617 0.96789 1.00247 1.21087 0.93399 0.87425 0.93635 0.94705 1.22072 0.95420 0.82959 1.00272 1.45926 1.53323 1.23326 1.15151 1.19639 0.79677 0.86930 0.83322 1.90704 1.59624 1.55834 1.31522 1.21030 0.94522 0.90818 0.89667 0.89942 1.21857 0.92338 0.98123 1.04033 1.21506 0.99961 0.95850 0.98091 1.21954 0.95101 1.01126 0.99371 1.21636 0.92908 0.85120 1.01196 1.47005 1.32084 1.21694 1.35426 1.16106 0.80819 0.84137 0.79649 1.43208 1.44304 1.16788 1.39949 1.91296 1.61669 1.19040 1.69143 0.93829 0.96733 0.88328 0.92553 0.92357 0.91827 0.92660 0.92158 0.91720 0.77925 0.90242 0.90170 0.91154 0.91508 0.90593 0.91228 0.91196 0.90298 0.78053 0.75527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.64 10.17 55.49 0.56 -27.08 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.22 -6.35 9.74 -15.06 -0.15 -6.49 16 8 H 0.08 2.18 7.83 -52.48 -0.41 1.76 16 9 N -0.59 -15.52 3.14 -162.31 -0.51 -16.03 16 10 C 0.16 3.99 5.79 -2.35 -0.01 3.98 16 11 C -0.15 -2.92 7.08 -24.59 -0.17 -3.09 16 12 C -0.12 -2.30 6.25 -24.90 -0.16 -2.46 16 13 C 0.15 3.26 3.17 -66.95 -0.21 3.05 16 14 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 15 C 0.12 2.53 5.11 -4.04 -0.02 2.51 16 16 N -0.72 -12.32 5.38 -60.29 -0.32 -12.64 16 17 C 0.52 9.11 4.80 -10.99 -0.05 9.06 16 18 O -0.50 -11.36 13.90 -20.04 -0.28 -11.64 16 19 C 0.15 1.77 3.31 -68.75 -0.23 1.54 16 20 H 0.08 0.78 7.93 -51.93 -0.41 0.36 16 21 C -0.12 -1.26 5.33 -26.61 -0.14 -1.40 16 22 C -0.12 -0.77 5.89 -26.65 -0.16 -0.92 16 23 C -0.14 -0.81 6.08 -26.58 -0.16 -0.97 16 24 C 0.11 0.72 6.35 -3.71 -0.02 0.70 16 25 N -0.62 -6.90 2.97 -172.24 -0.51 -7.41 16 26 C 0.69 9.86 8.40 -86.93 -0.73 9.13 16 27 N -0.87 -8.06 8.74 27.63 0.24 -7.82 16 28 O -0.54 -10.88 12.28 -20.31 -0.25 -11.13 16 29 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.01 0.40 8.14 -51.92 -0.42 -0.02 16 31 H 0.10 2.76 6.09 -51.93 -0.32 2.45 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.22 7.76 -51.93 -0.40 0.82 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 1.44 7.83 -51.93 -0.41 1.03 16 37 H 0.06 1.61 8.00 -51.93 -0.42 1.20 16 38 H 0.39 5.27 8.28 -40.82 -0.34 4.93 16 39 H 0.08 1.00 8.01 -51.93 -0.42 0.59 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.34 5.73 -51.93 -0.30 0.05 16 47 H 0.39 2.16 6.41 -40.82 -0.26 1.90 16 48 H 0.41 3.64 8.93 -40.82 -0.36 3.27 16 LS Contribution 370.92 15.07 5.59 5.59 Total: -1.00 -38.23 370.92 -10.64 -48.87 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -7.83 Total: 7.15 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: -2.31 Total: 14.26 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -0.54 Total: -70.98 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.53 Total: -22.77 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.23 -10.64 -48.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028254551.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.923 kcal (2) G-P(sol) polarization free energy of solvation -38.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds