Wall clock time and date at job start Fri Apr 10 2020 18:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 120.00030 * 2 1 4 4 H 1.48500 * 109.46879 * 5.47613 * 3 2 1 5 5 H 1.48497 * 109.47130 * 125.47390 * 3 2 1 6 6 H 1.48494 * 109.47186 * 245.47648 * 3 2 1 7 7 C 1.38815 * 120.00551 * 179.72370 * 2 1 3 8 8 H 1.07998 * 119.99444 * 341.03482 * 7 2 1 9 9 N 1.36932 * 120.00387 * 161.03338 * 7 2 1 10 10 C 1.47024 * 125.64788 * 354.88023 * 9 7 2 11 11 C 1.54323 * 107.27149 * 181.02210 * 10 9 7 12 12 C 1.55166 * 102.94076 * 22.19693 * 11 10 9 13 13 H 1.09000 * 111.00551 * 82.60983 * 12 11 10 14 14 C 1.53001 * 111.00292 * 206.42173 * 12 11 10 15 15 N 1.46501 * 109.46866 * 184.99813 * 14 12 11 16 16 C 1.34778 * 119.99655 * 179.97438 * 15 14 12 17 17 O 1.21277 * 120.00141 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99937 * 180.02562 * 16 15 14 19 19 H 1.08997 * 109.49774 * 300.00278 * 18 16 15 20 20 C 1.53034 * 109.50035 * 179.97438 * 18 16 15 21 21 C 1.53036 * 109.54438 * 178.71629 * 20 18 16 22 22 C 1.53195 * 109.33901 * 61.31161 * 21 20 18 23 23 N 1.46921 * 108.77830 * 305.38625 * 22 21 20 24 24 C 1.34778 * 120.63551 * 233.62742 * 23 22 21 25 25 N 1.34777 * 119.99496 * 4.94573 * 24 23 22 26 26 O 1.21580 * 120.00520 * 184.93980 * 24 23 22 27 27 C 1.46933 * 118.73789 * 53.60735 * 23 22 21 28 28 C 1.47427 * 125.65062 * 174.57749 * 9 7 2 29 29 H 0.97004 * 119.99971 * 174.95804 * 1 2 3 30 30 H 1.08993 * 109.88446 * 300.44111 * 10 9 7 31 31 H 1.09002 * 109.88089 * 61.61020 * 10 9 7 32 32 H 1.08995 * 110.72014 * 140.55616 * 11 10 9 33 33 H 1.08997 * 110.72275 * 263.83701 * 11 10 9 34 34 H 1.08998 * 109.47220 * 304.99998 * 14 12 11 35 35 H 1.09000 * 109.46861 * 64.99929 * 14 12 11 36 36 H 0.96994 * 120.00149 * 0.02562 * 15 14 12 37 37 H 1.09004 * 109.46145 * 298.70536 * 20 18 16 38 38 H 1.09006 * 109.46234 * 58.65792 * 20 18 16 39 39 H 1.09002 * 109.46714 * 301.36821 * 21 20 18 40 40 H 1.08995 * 109.52952 * 181.30363 * 21 20 18 41 41 H 1.08993 * 109.58677 * 185.59735 * 22 21 20 42 42 H 1.08998 * 109.58482 * 65.17386 * 22 21 20 43 43 H 0.97006 * 120.00279 * 5.17550 * 25 24 23 44 44 H 0.96998 * 120.00409 * 185.17861 * 25 24 23 45 45 H 1.08999 * 109.58698 * 186.60704 * 27 23 22 46 46 H 1.08996 * 109.70494 * 66.24565 * 27 23 22 47 47 H 1.09004 * 110.36439 * 274.74594 * 28 9 7 48 48 H 1.09002 * 110.36339 * 37.06555 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2906 2.7433 0.1336 5 1 3.2013 1.6402 1.1402 6 1 3.0009 1.7559 -1.2737 7 6 2.0103 -1.2021 0.0058 8 1 1.5143 -2.1105 0.3142 9 7 3.3239 -1.2361 -0.3795 10 6 4.0878 -0.1023 -0.9203 11 6 5.5088 -0.6156 -1.2346 12 6 5.3006 -2.1461 -1.3828 13 1 4.9454 -2.3971 -2.3823 14 6 6.5853 -2.9088 -1.0530 15 7 6.3875 -4.3360 -1.3179 16 6 7.3919 -5.2076 -1.0987 17 8 8.4593 -4.8104 -0.6818 18 6 7.1886 -6.6756 -1.3716 19 1 6.3743 -7.0515 -0.7522 20 6 8.4736 -7.4390 -1.0430 21 6 8.2582 -8.9340 -1.2894 22 6 7.9241 -9.1617 -2.7670 23 7 6.7758 -8.3191 -3.1276 24 6 5.6819 -8.8579 -3.7015 25 7 5.5923 -10.1935 -3.8590 26 8 4.7758 -8.1394 -4.0770 27 6 6.8425 -6.8777 -2.8502 28 6 4.2081 -2.4140 -0.3147 29 1 -0.4850 -0.8368 -0.0738 30 1 3.6151 0.2618 -1.8324 31 1 4.1376 0.6974 -0.1813 32 1 5.8774 -0.1847 -2.1654 33 1 6.1888 -0.3970 -0.4113 34 1 7.3998 -2.5337 -1.6727 35 1 6.8331 -2.7653 -0.0013 36 1 5.5339 -4.6536 -1.6516 37 1 9.2824 -7.0795 -1.6793 38 1 8.7351 -7.2768 0.0027 39 1 7.4336 -9.2889 -0.6712 40 1 9.1661 -9.4800 -1.0333 41 1 7.6727 -10.2100 -2.9275 42 1 8.7828 -8.8915 -3.3816 43 1 6.2792 -10.7723 -3.4927 44 1 4.8409 -10.5760 -4.3386 45 1 5.8774 -6.4191 -3.0655 46 1 7.6117 -6.4191 -3.4715 47 1 4.6552 -2.4987 0.6758 48 1 3.6525 -3.3192 -0.5597 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028672459.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:31 Heat of formation + Delta-G solvation = -35.823867 kcal Electronic energy + Delta-G solvation = -28058.519603 eV Core-core repulsion = 24149.145753 eV Total energy + Delta-G solvation = -3909.373849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.96931 -39.80278 -38.14854 -37.34553 -34.87121 -34.38469 -32.75300 -32.71301 -31.71168 -30.19318 -28.72135 -26.12816 -25.68578 -24.39672 -23.07966 -21.91323 -21.00151 -20.36761 -20.00105 -19.69633 -18.85944 -17.57525 -17.36057 -16.94048 -16.29143 -15.80941 -15.69011 -15.27713 -15.19281 -14.91836 -14.66408 -14.35251 -13.95765 -13.76803 -13.61050 -13.44829 -13.20051 -12.93633 -12.83896 -12.52797 -12.08019 -11.86810 -11.61472 -11.50524 -11.39360 -11.22246 -11.05188 -10.92643 -10.59839 -10.55775 -10.43826 -10.06971 -9.93354 -9.90928 -9.38502 -9.10639 -9.03074 -8.93503 -8.63267 -7.02753 -6.28943 -3.16782 2.24551 2.56786 2.83512 3.10354 3.44512 3.53444 3.65853 3.74382 4.22453 4.29533 4.42746 4.51579 4.64739 4.66371 4.81024 4.83555 4.94698 5.02617 5.13006 5.18641 5.24335 5.27601 5.35027 5.37739 5.48328 5.49079 5.63209 5.74002 5.76867 5.80658 5.90324 5.94890 6.04778 6.11875 6.23346 6.32562 6.35682 6.43409 6.52838 6.54415 6.74967 6.80392 7.42010 7.43458 7.68236 8.11472 8.23327 8.36000 9.06977 9.59796 10.25754 11.21525 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017724 B = 0.002657 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.384003 B =10537.484770 C =11606.802182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.022 4.022 3 Si 1.064 2.936 4 H -0.302 1.302 5 H -0.299 1.299 6 H -0.283 1.283 7 C -0.324 4.324 8 H 0.079 0.921 9 N -0.613 5.613 10 C 0.110 3.890 11 C -0.119 4.119 12 C -0.119 4.119 13 H 0.085 0.915 14 C 0.132 3.868 15 N -0.723 5.723 16 C 0.520 3.480 17 O -0.541 6.541 18 C -0.125 4.125 19 H 0.102 0.898 20 C -0.099 4.099 21 C -0.137 4.137 22 C 0.110 3.890 23 N -0.627 5.627 24 C 0.709 3.291 25 N -0.868 5.868 26 O -0.586 6.586 27 C 0.139 3.861 28 C 0.143 3.857 29 H 0.262 0.738 30 H 0.048 0.952 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.404 0.596 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.395 0.605 44 H 0.414 0.586 45 H 0.101 0.899 46 H 0.074 0.926 47 H 0.023 0.977 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.398 -22.033 -6.799 30.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.221 4.221 3 Si 0.898 3.102 4 H -0.230 1.230 5 H -0.228 1.228 6 H -0.211 1.211 7 C -0.451 4.451 8 H 0.096 0.904 9 N -0.341 5.341 10 C -0.015 4.015 11 C -0.158 4.158 12 C -0.139 4.139 13 H 0.104 0.896 14 C 0.008 3.992 15 N -0.374 5.374 16 C 0.305 3.695 17 O -0.418 6.418 18 C -0.147 4.147 19 H 0.120 0.880 20 C -0.137 4.137 21 C -0.175 4.175 22 C -0.014 4.014 23 N -0.365 5.365 24 C 0.408 3.592 25 N -0.439 5.439 26 O -0.464 6.464 27 C 0.015 3.985 28 C 0.016 3.984 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.239 0.761 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.226 0.774 44 H 0.247 0.753 45 H 0.119 0.881 46 H 0.092 0.908 47 H 0.041 0.959 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 20.336 -19.478 -6.604 28.923 hybrid contribution -0.186 -2.362 -0.031 2.369 sum 20.149 -21.840 -6.635 30.447 Atomic orbital electron populations 1.70893 1.05834 1.29187 1.50831 1.25777 0.96365 1.00891 0.99104 0.83962 0.73430 0.76394 0.76406 1.23016 1.22763 1.21052 1.20153 0.83753 0.96927 1.44266 0.90357 1.44851 1.08714 1.05481 1.75049 1.21994 0.90596 0.91707 0.97174 1.22545 0.97759 0.94045 1.01414 1.22694 0.94652 0.95630 1.00897 0.89640 1.21379 0.97463 0.78869 1.01450 1.46137 1.16029 1.08239 1.67036 1.20319 0.83937 0.87658 0.77600 1.90699 1.25954 1.79683 1.45459 1.21762 1.01350 0.92979 0.98607 0.87974 1.21315 0.95837 0.93183 1.03336 1.21975 1.02600 0.97183 0.95736 1.21711 0.88987 0.94352 0.96327 1.47192 1.16001 1.08562 1.64794 1.15854 0.82170 0.82640 0.78495 1.43162 1.31055 1.05776 1.63879 1.91009 1.39269 1.60130 1.55958 1.21384 1.04026 0.79959 0.93113 1.21638 0.90386 0.91527 0.94815 0.92862 0.93404 0.95393 0.91053 0.91260 0.91396 0.91175 0.76132 0.90789 0.90504 0.91209 0.90031 0.90342 0.90835 0.77421 0.75345 0.88111 0.90821 0.95888 0.93907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.64 13.70 55.49 0.76 -28.88 16 2 C -0.02 -0.66 5.49 -17.43 -0.10 -0.76 16 3 Si 1.06 27.20 24.55 -169.99 -4.17 23.02 16 4 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 5 H -0.30 -7.41 6.88 56.52 0.39 -7.03 16 6 H -0.28 -6.57 5.28 56.52 0.30 -6.27 16 7 C -0.32 -9.46 10.54 -15.06 -0.16 -9.62 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 9 N -0.61 -15.19 3.35 -169.94 -0.57 -15.76 16 10 C 0.11 2.41 4.58 -3.06 -0.01 2.39 16 11 C -0.12 -1.94 6.42 -24.89 -0.16 -2.10 16 12 C -0.12 -1.83 3.06 -88.35 -0.27 -2.10 16 13 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 14 C 0.13 1.74 5.13 -4.04 -0.02 1.72 16 15 N -0.72 -8.53 5.41 -60.29 -0.33 -8.85 16 16 C 0.52 6.19 7.16 -10.98 -0.08 6.11 16 17 O -0.54 -8.21 15.98 5.56 0.09 -8.12 16 18 C -0.12 -1.10 2.67 -91.65 -0.25 -1.35 16 19 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 20 C -0.10 -0.74 4.46 -26.70 -0.12 -0.86 16 21 C -0.14 -0.64 6.08 -26.61 -0.16 -0.80 16 22 C 0.11 0.49 6.43 -3.71 -0.02 0.46 16 23 N -0.63 -4.93 2.97 -178.50 -0.53 -5.47 16 24 C 0.71 7.06 8.57 -86.92 -0.75 6.32 16 25 N -0.87 -4.83 8.77 27.63 0.24 -4.59 16 26 O -0.59 -8.75 16.61 5.30 0.09 -8.66 16 27 C 0.14 1.24 5.56 -3.71 -0.02 1.22 16 28 C 0.14 2.80 6.65 -2.41 -0.02 2.78 16 29 H 0.26 8.27 8.73 -40.82 -0.36 7.91 16 30 H 0.05 1.10 6.50 -51.93 -0.34 0.76 16 31 H 0.03 0.65 4.20 -51.93 -0.22 0.44 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.04 8.04 -51.93 -0.42 0.63 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.00 7.96 -51.93 -0.41 0.59 16 36 H 0.40 4.36 8.02 -40.82 -0.33 4.03 16 37 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 38 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.08 0.16 5.58 -51.93 -0.29 -0.13 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.40 0.99 6.32 -40.82 -0.26 0.73 16 44 H 0.41 1.98 8.93 -40.82 -0.36 1.62 16 45 H 0.10 1.06 6.64 -51.93 -0.34 0.71 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.02 0.46 7.91 -51.93 -0.41 0.05 16 48 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -38.08 369.77 -8.69 -46.78 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.72 Total: 1.54 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -2.13 Total: 3.43 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: -0.42 Total: -63.55 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: 0.18 Total: -16.78 kcal Atomic # 14 Polarization: 27.20 SS G_CDS: -4.17 Total: 23.02 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.08 -8.69 -46.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028672459.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.952 kcal (2) G-P(sol) polarization free energy of solvation -38.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds