Wall clock time and date at job start Fri Apr 10 2020 18:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00300 * 2 1 4 4 H 1.48493 * 109.47378 * 240.00377 * 3 2 1 5 5 H 1.48504 * 109.46541 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47032 * 120.00098 * 3 2 1 7 7 C 1.38820 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99649 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99725 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.65193 * 0.04399 * 9 7 2 11 11 C 1.54907 * 104.83351 * 204.09180 * 10 9 7 12 12 C 1.55163 * 101.57997 * 322.99242 * 11 10 9 13 13 H 1.08999 * 110.87146 * 277.06282 * 12 11 10 14 14 C 1.52997 * 110.71921 * 153.86777 * 12 11 10 15 15 N 1.46503 * 109.47411 * 180.02562 * 14 12 11 16 16 C 1.34772 * 120.00440 * 179.97438 * 15 14 12 17 17 O 1.21282 * 119.99670 * 359.97438 * 16 15 14 18 18 C 1.50696 * 119.99980 * 180.27626 * 16 15 14 19 19 H 1.09003 * 109.49870 * 299.78260 * 18 16 15 20 20 C 1.53041 * 109.49848 * 179.72534 * 18 16 15 21 21 C 1.53038 * 109.53745 * 178.68210 * 20 18 16 22 22 C 1.53189 * 109.31736 * 61.36507 * 21 20 18 23 23 N 1.46922 * 108.77327 * 305.36609 * 22 21 20 24 24 C 1.34780 * 120.63091 * 233.60763 * 23 22 21 25 25 N 1.34775 * 119.99898 * 354.77209 * 24 23 22 26 26 O 1.21589 * 120.00230 * 174.76718 * 24 23 22 27 27 C 1.46927 * 118.74116 * 53.60339 * 23 22 21 28 28 C 1.47027 * 125.64271 * 179.97438 * 9 7 2 29 29 H 0.97004 * 120.00463 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.36468 * 322.93150 * 10 9 7 31 31 H 1.08997 * 110.36689 * 85.14041 * 10 9 7 32 32 H 1.08993 * 111.00941 * 204.91732 * 11 10 9 33 33 H 1.08994 * 111.00625 * 81.06079 * 11 10 9 34 34 H 1.08992 * 109.47728 * 60.02154 * 14 12 11 35 35 H 1.09003 * 109.47391 * 300.02005 * 14 12 11 36 36 H 0.97009 * 119.99307 * 359.97438 * 15 14 12 37 37 H 1.08996 * 109.45657 * 298.70209 * 20 18 16 38 38 H 1.09002 * 109.46211 * 58.67522 * 20 18 16 39 39 H 1.09004 * 109.49407 * 181.31477 * 21 20 18 40 40 H 1.08999 * 109.49855 * 301.40487 * 21 20 18 41 41 H 1.09004 * 109.58704 * 65.14882 * 22 21 20 42 42 H 1.08994 * 109.58981 * 185.57374 * 22 21 20 43 43 H 0.97002 * 120.00174 * 4.96534 * 25 24 23 44 44 H 0.96996 * 119.99886 * 184.97294 * 25 24 23 45 45 H 1.09007 * 109.58687 * 186.60391 * 27 23 22 46 46 H 1.08998 * 109.58554 * 66.18090 * 27 23 22 47 47 H 1.09000 * 109.87816 * 59.56129 * 28 9 7 48 48 H 1.08991 * 109.88401 * 298.39763 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1416 -2.5332 -0.0009 11 6 -0.4019 -3.9325 0.6105 12 6 0.7783 -4.7525 0.0255 13 1 0.5481 -5.1001 -0.9816 14 6 1.1228 -5.9316 0.9374 15 7 2.2388 -6.6854 0.3607 16 6 2.7169 -7.7736 0.9960 17 8 2.2234 -8.1286 2.0455 18 6 3.8689 -8.5453 0.4058 19 1 3.5890 -8.9208 -0.5785 20 6 4.2180 -9.7214 1.3206 21 6 5.3662 -10.5248 0.7057 22 6 6.6015 -9.6277 0.5789 23 7 6.2351 -8.4228 -0.1778 24 6 6.9387 -8.0557 -1.2671 25 7 8.0511 -8.7343 -1.6111 26 8 6.5697 -7.1123 -1.9397 27 6 5.0871 -7.6257 0.2756 28 6 1.9317 -3.7275 -0.0016 29 1 -0.4851 0.8400 0.0004 30 1 -0.5995 -1.7590 0.6148 31 1 -0.5274 -2.4846 -1.0192 32 1 -1.3591 -4.3329 0.2767 33 1 -0.3525 -3.8987 1.6988 34 1 0.2545 -6.5836 1.0321 35 1 1.4064 -5.5590 1.9218 36 1 2.6337 -6.4012 -0.4786 37 1 4.5210 -9.3442 2.2973 38 1 3.3453 -10.3645 1.4345 39 1 5.5987 -11.3756 1.3462 40 1 5.0728 -10.8816 -0.2815 41 1 6.9502 -9.3436 1.5718 42 1 7.3903 -10.1644 0.0520 43 1 8.3059 -9.5299 -1.1180 44 1 8.5971 -8.4271 -2.3516 45 1 4.8769 -6.8413 -0.4517 46 1 5.3123 -7.1784 1.2437 47 1 2.5584 -3.8514 0.8816 48 1 2.5280 -3.8638 -0.9037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028672461.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:39 Heat of formation + Delta-G solvation = -44.231839 kcal Electronic energy + Delta-G solvation = -28147.301409 eV Core-core repulsion = 24237.562962 eV Total energy + Delta-G solvation = -3909.738446 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.88636 -39.69855 -37.82700 -37.18891 -34.66441 -34.32012 -32.67467 -32.57141 -31.55256 -29.69808 -28.18231 -25.88207 -25.53888 -24.51333 -23.27945 -21.87532 -20.63329 -20.01846 -19.80343 -19.43549 -18.79144 -17.39807 -17.02913 -16.68466 -16.01619 -15.90518 -15.25816 -15.23416 -15.03501 -14.65224 -14.59358 -14.06957 -13.90821 -13.73205 -13.56968 -13.34692 -13.02993 -12.65941 -12.46515 -11.87060 -11.74630 -11.65675 -11.44784 -11.42865 -11.32041 -10.97706 -10.92271 -10.75303 -10.49030 -10.39908 -10.12557 -10.00782 -9.99119 -9.87384 -9.69234 -9.46440 -9.00143 -8.92238 -8.60962 -6.79457 -5.61630 -3.03012 2.32283 2.66967 2.90960 3.22394 3.44007 3.47784 3.49309 3.72778 4.29356 4.37055 4.48859 4.52521 4.60782 4.74515 4.89899 5.02199 5.13984 5.22289 5.29354 5.32702 5.42121 5.44803 5.45375 5.55820 5.57113 5.72922 5.80436 5.92077 5.97643 6.01368 6.10343 6.14604 6.37973 6.39752 6.46969 6.58870 6.60624 6.61623 6.76386 6.95157 7.49786 7.54436 7.55340 7.66704 7.89033 8.22725 8.30428 8.40232 9.26184 9.87130 10.52017 11.42400 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014077 B = 0.002878 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.569674 B = 9728.242792 C =11286.311827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.076 0.924 14 C 0.132 3.868 15 N -0.722 5.722 16 C 0.518 3.482 17 O -0.542 6.542 18 C -0.123 4.123 19 H 0.101 0.899 20 C -0.099 4.099 21 C -0.135 4.135 22 C 0.109 3.891 23 N -0.627 5.627 24 C 0.708 3.292 25 N -0.869 5.869 26 O -0.585 6.585 27 C 0.137 3.863 28 C 0.141 3.859 29 H 0.252 0.748 30 H 0.107 0.893 31 H 0.012 0.988 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.403 0.597 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.395 0.605 44 H 0.414 0.586 45 H 0.103 0.897 46 H 0.075 0.925 47 H 0.024 0.976 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.398 -24.744 0.321 27.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.135 4.135 13 H 0.094 0.906 14 C 0.009 3.991 15 N -0.373 5.373 16 C 0.303 3.697 17 O -0.419 6.419 18 C -0.145 4.145 19 H 0.119 0.881 20 C -0.137 4.137 21 C -0.173 4.173 22 C -0.014 4.014 23 N -0.365 5.365 24 C 0.408 3.592 25 N -0.439 5.439 26 O -0.462 6.462 27 C 0.014 3.986 28 C 0.015 3.985 29 H 0.063 0.937 30 H 0.124 0.876 31 H 0.030 0.970 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.238 0.762 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.225 0.775 44 H 0.246 0.754 45 H 0.121 0.879 46 H 0.093 0.907 47 H 0.042 0.958 48 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 11.617 -24.084 0.737 26.749 hybrid contribution 1.047 0.598 -0.611 1.352 sum 12.665 -23.486 0.125 26.683 Atomic orbital electron populations 1.69782 1.04888 1.24846 1.57713 1.24780 0.95725 0.97703 1.02494 0.86149 0.78398 0.83035 0.77916 1.21205 1.21585 1.21168 1.19051 0.90502 0.82519 1.42992 0.90563 1.44493 1.01965 0.99728 1.86838 1.21930 0.84697 0.92486 0.98195 1.22998 0.95509 0.98613 1.00270 1.22453 0.98351 0.94034 0.98626 0.90584 1.21466 0.88192 0.92198 0.97268 1.46171 1.36144 1.28368 1.26657 1.20323 0.83998 0.80665 0.84695 1.90698 1.60450 1.68124 1.22644 1.21741 0.93989 0.97142 1.01671 0.88126 1.21320 0.98487 0.95508 0.98389 1.21959 0.95156 0.98178 1.02057 1.21705 0.97239 0.85615 0.96871 1.47196 1.32507 1.28192 1.28643 1.15861 0.80388 0.82338 0.80630 1.43159 1.28012 1.32696 1.40045 1.91015 1.70526 1.31086 1.53621 1.21423 0.82878 0.92929 1.01409 1.21329 0.93463 0.85940 0.97787 0.93711 0.87557 0.97032 0.92161 0.91849 0.91673 0.91194 0.76227 0.90734 0.90586 0.90085 0.91295 0.90863 0.90405 0.77487 0.75380 0.87922 0.90703 0.95795 0.96269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.32 10.09 55.49 0.56 -26.76 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.22 -6.34 10.27 -15.06 -0.15 -6.50 16 8 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 9 N -0.60 -15.76 3.39 -170.07 -0.58 -16.33 16 10 C 0.15 3.72 5.89 -2.53 -0.01 3.70 16 11 C -0.13 -2.53 6.53 -24.58 -0.16 -2.69 16 12 C -0.12 -1.96 3.02 -88.78 -0.27 -2.22 16 13 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 14 C 0.13 1.96 4.99 -4.04 -0.02 1.94 16 15 N -0.72 -9.34 5.30 -60.30 -0.32 -9.66 16 16 C 0.52 6.67 7.16 -10.99 -0.08 6.60 16 17 O -0.54 -8.79 15.98 5.56 0.09 -8.71 16 18 C -0.12 -1.18 2.68 -91.65 -0.25 -1.42 16 19 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 20 C -0.10 -0.80 4.46 -26.69 -0.12 -0.92 16 21 C -0.14 -0.71 6.08 -26.61 -0.16 -0.87 16 22 C 0.11 0.56 6.39 -3.71 -0.02 0.54 16 23 N -0.63 -5.45 2.97 -178.50 -0.53 -5.98 16 24 C 0.71 7.55 8.57 -86.92 -0.74 6.80 16 25 N -0.87 -5.30 8.78 27.63 0.24 -5.05 16 26 O -0.59 -9.15 16.60 5.29 0.09 -9.06 16 27 C 0.14 1.39 5.58 -3.71 -0.02 1.37 16 28 C 0.14 2.94 6.52 -3.06 -0.02 2.92 16 29 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.11 2.93 5.87 -51.93 -0.31 2.63 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.19 8.05 -51.93 -0.42 0.77 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 36 H 0.40 4.75 7.87 -40.82 -0.32 4.43 16 37 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 38 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 39 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.20 5.65 -51.93 -0.29 -0.09 16 43 H 0.39 1.17 6.32 -40.82 -0.26 0.91 16 44 H 0.41 2.18 8.93 -40.82 -0.36 1.81 16 45 H 0.10 1.22 6.59 -51.92 -0.34 0.88 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.02 0.51 7.77 -51.93 -0.40 0.10 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 376.48 15.07 5.67 5.67 Total: -1.00 -36.17 376.48 -9.67 -45.83 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -7.74 Total: 3.75 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -2.13 Total: 8.80 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: -0.63 Total: -63.79 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: 0.18 Total: -17.76 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.17 -9.67 -45.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028672461.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.602 kcal (2) G-P(sol) polarization free energy of solvation -36.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds