Wall clock time and date at job start Fri Apr 10 2020 18:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00300 * 2 1 4 4 H 1.48493 * 109.47378 * 240.00377 * 3 2 1 5 5 H 1.48504 * 109.46541 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47032 * 120.00098 * 3 2 1 7 7 C 1.38820 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99649 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99725 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.65193 * 0.04399 * 9 7 2 11 11 C 1.54907 * 104.83351 * 204.09180 * 10 9 7 12 12 C 1.55163 * 101.57997 * 322.99242 * 11 10 9 13 13 H 1.08999 * 110.87146 * 277.06282 * 12 11 10 14 14 C 1.52997 * 110.71921 * 153.86777 * 12 11 10 15 15 N 1.46503 * 109.47411 * 180.02562 * 14 12 11 16 16 C 1.34772 * 120.00440 * 179.97438 * 15 14 12 17 17 O 1.21282 * 119.99670 * 359.97438 * 16 15 14 18 18 C 1.50696 * 119.99980 * 180.27626 * 16 15 14 19 19 H 1.09003 * 109.49870 * 299.78260 * 18 16 15 20 20 C 1.53041 * 109.49848 * 179.72534 * 18 16 15 21 21 C 1.53038 * 109.53745 * 178.68210 * 20 18 16 22 22 C 1.53189 * 109.31736 * 61.36507 * 21 20 18 23 23 N 1.46922 * 108.77327 * 305.36609 * 22 21 20 24 24 C 1.34780 * 120.63091 * 233.60763 * 23 22 21 25 25 N 1.34775 * 119.99898 * 354.77209 * 24 23 22 26 26 O 1.21589 * 120.00230 * 174.76718 * 24 23 22 27 27 C 1.46927 * 118.74116 * 53.60339 * 23 22 21 28 28 C 1.47027 * 125.64271 * 179.97438 * 9 7 2 29 29 H 0.97004 * 120.00463 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.36468 * 322.93150 * 10 9 7 31 31 H 1.08997 * 110.36689 * 85.14041 * 10 9 7 32 32 H 1.08993 * 111.00941 * 204.91732 * 11 10 9 33 33 H 1.08994 * 111.00625 * 81.06079 * 11 10 9 34 34 H 1.08992 * 109.47728 * 60.02154 * 14 12 11 35 35 H 1.09003 * 109.47391 * 300.02005 * 14 12 11 36 36 H 0.97009 * 119.99307 * 359.97438 * 15 14 12 37 37 H 1.08996 * 109.45657 * 298.70209 * 20 18 16 38 38 H 1.09002 * 109.46211 * 58.67522 * 20 18 16 39 39 H 1.09004 * 109.49407 * 181.31477 * 21 20 18 40 40 H 1.08999 * 109.49855 * 301.40487 * 21 20 18 41 41 H 1.09004 * 109.58704 * 65.14882 * 22 21 20 42 42 H 1.08994 * 109.58981 * 185.57374 * 22 21 20 43 43 H 0.97002 * 120.00174 * 4.96534 * 25 24 23 44 44 H 0.96996 * 119.99886 * 184.97294 * 25 24 23 45 45 H 1.09007 * 109.58687 * 186.60391 * 27 23 22 46 46 H 1.08998 * 109.58554 * 66.18090 * 27 23 22 47 47 H 1.09000 * 109.87816 * 59.56129 * 28 9 7 48 48 H 1.08991 * 109.88401 * 298.39763 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1416 -2.5332 -0.0009 11 6 -0.4019 -3.9325 0.6105 12 6 0.7783 -4.7525 0.0255 13 1 0.5481 -5.1001 -0.9816 14 6 1.1228 -5.9316 0.9374 15 7 2.2388 -6.6854 0.3607 16 6 2.7169 -7.7736 0.9960 17 8 2.2234 -8.1286 2.0455 18 6 3.8689 -8.5453 0.4058 19 1 3.5890 -8.9208 -0.5785 20 6 4.2180 -9.7214 1.3206 21 6 5.3662 -10.5248 0.7057 22 6 6.6015 -9.6277 0.5789 23 7 6.2351 -8.4228 -0.1778 24 6 6.9387 -8.0557 -1.2671 25 7 8.0511 -8.7343 -1.6111 26 8 6.5697 -7.1123 -1.9397 27 6 5.0871 -7.6257 0.2756 28 6 1.9317 -3.7275 -0.0016 29 1 -0.4851 0.8400 0.0004 30 1 -0.5995 -1.7590 0.6148 31 1 -0.5274 -2.4846 -1.0192 32 1 -1.3591 -4.3329 0.2767 33 1 -0.3525 -3.8987 1.6988 34 1 0.2545 -6.5836 1.0321 35 1 1.4064 -5.5590 1.9218 36 1 2.6337 -6.4012 -0.4786 37 1 4.5210 -9.3442 2.2973 38 1 3.3453 -10.3645 1.4345 39 1 5.5987 -11.3756 1.3462 40 1 5.0728 -10.8816 -0.2815 41 1 6.9502 -9.3436 1.5718 42 1 7.3903 -10.1644 0.0520 43 1 8.3059 -9.5299 -1.1180 44 1 8.5971 -8.4271 -2.3516 45 1 4.8769 -6.8413 -0.4517 46 1 5.3123 -7.1784 1.2437 47 1 2.5584 -3.8514 0.8816 48 1 2.5280 -3.8638 -0.9037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028672461.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:38 Heat of formation + Delta-G solvation = -71.867164 kcal Electronic energy + Delta-G solvation = -28148.499766 eV Core-core repulsion = 24237.562962 eV Total energy + Delta-G solvation = -3910.936804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.69417 -40.70877 -39.34760 -38.10041 -36.07772 -35.09065 -34.33347 -33.32719 -32.43758 -31.44085 -29.79567 -27.40032 -26.41305 -25.77493 -24.51382 -22.65995 -22.11643 -21.36191 -20.98630 -20.45746 -19.45423 -18.91033 -18.13990 -17.79167 -17.26206 -16.85432 -16.71652 -16.32389 -16.11564 -15.79691 -15.56913 -15.33442 -15.08465 -14.85281 -14.35390 -14.29772 -14.22635 -14.04453 -13.62490 -13.53145 -13.36615 -13.10982 -12.82921 -12.66132 -12.51884 -12.05930 -12.02074 -11.96319 -11.91433 -11.83756 -11.67234 -11.58317 -11.38994 -11.32412 -10.83622 -10.73829 -10.71111 -10.10314 -9.65298 -8.89086 -7.78406 -5.22622 1.44969 1.47214 1.48426 1.54820 1.80260 2.11074 2.20666 2.48960 3.21848 3.30668 3.57575 3.63918 3.71201 3.78809 3.84029 3.97204 4.03423 4.04933 4.12789 4.24648 4.44716 4.50842 4.55483 4.65008 4.68803 4.73676 4.75140 4.81019 4.90164 4.90992 5.04204 5.05621 5.12517 5.17802 5.33635 5.38322 5.42538 5.43795 5.47400 5.65554 5.81949 5.82192 6.01178 6.31205 6.49579 6.90447 7.10633 7.17983 7.60601 7.78263 8.41716 9.23315 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014077 B = 0.002878 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.569674 B = 9728.242792 C =11286.311827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.980 3.020 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.077 0.923 9 N -0.628 5.628 10 C 0.152 3.848 11 C -0.121 4.121 12 C -0.095 4.095 13 H 0.093 0.907 14 C 0.144 3.856 15 N -0.719 5.719 16 C 0.519 3.481 17 O -0.575 6.575 18 C -0.110 4.110 19 H 0.111 0.889 20 C -0.098 4.098 21 C -0.126 4.126 22 C 0.103 3.897 23 N -0.624 5.624 24 C 0.700 3.300 25 N -0.847 5.847 26 O -0.643 6.643 27 C 0.140 3.860 28 C 0.138 3.862 29 H 0.248 0.752 30 H 0.072 0.928 31 H -0.011 1.011 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.410 0.590 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.106 0.894 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.412 0.588 44 H 0.420 0.580 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.021 0.979 48 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.996 -27.318 0.345 30.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.808 3.192 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.095 0.905 9 N -0.354 5.354 10 C 0.027 3.973 11 C -0.160 4.160 12 C -0.114 4.114 13 H 0.111 0.889 14 C 0.020 3.980 15 N -0.370 5.370 16 C 0.306 3.694 17 O -0.454 6.454 18 C -0.132 4.132 19 H 0.129 0.871 20 C -0.136 4.136 21 C -0.164 4.164 22 C -0.019 4.019 23 N -0.361 5.361 24 C 0.400 3.600 25 N -0.418 5.418 26 O -0.525 6.525 27 C 0.015 3.985 28 C 0.013 3.987 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.007 0.993 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.245 0.755 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.124 0.876 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.127 0.873 43 H 0.246 0.754 44 H 0.253 0.747 45 H 0.100 0.900 46 H 0.088 0.912 47 H 0.039 0.961 48 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 13.272 -26.741 0.771 29.863 hybrid contribution 0.588 1.361 -0.603 1.601 sum 13.860 -25.379 0.167 28.918 Atomic orbital electron populations 1.70040 1.06147 1.25135 1.58478 1.25629 0.96677 1.00952 1.02633 0.85131 0.77165 0.78758 0.78159 1.20522 1.21668 1.20317 1.19415 0.90938 0.84013 1.42825 0.90524 1.44818 1.02884 1.00912 1.86812 1.21742 0.83958 0.95014 0.96609 1.22838 0.97733 0.95343 1.00057 1.22295 0.95724 0.93462 0.99961 0.88861 1.21207 0.89288 0.91628 0.95872 1.46128 1.35726 1.28311 1.26884 1.20861 0.84234 0.80272 0.84077 1.90683 1.61661 1.68979 1.24115 1.21685 0.92232 0.97034 1.02292 0.87065 1.21335 0.99522 0.94954 0.97805 1.21930 0.93715 0.98300 1.02478 1.22023 0.98169 0.84331 0.97368 1.47202 1.31667 1.28928 1.28317 1.16128 0.81198 0.82027 0.80648 1.42939 1.26364 1.32592 1.39925 1.90976 1.72167 1.33739 1.55605 1.21247 0.83857 0.92911 1.00486 1.21479 0.94818 0.84867 0.97544 0.94261 0.91018 0.99292 0.89118 0.91740 0.90363 0.92715 0.75454 0.91680 0.91236 0.87572 0.90966 0.89967 0.87259 0.75381 0.74718 0.90044 0.91175 0.96091 0.96008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.79 10.09 21.65 0.22 -57.57 16 2 C -0.07 -3.88 5.49 84.87 0.47 -3.41 16 3 Si 0.98 47.01 29.55 68.60 2.03 49.03 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 7 C -0.24 -14.17 10.27 84.04 0.86 -13.30 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.63 -33.46 3.39 -691.99 -2.35 -35.81 16 10 C 0.15 7.62 5.89 86.85 0.51 8.13 16 11 C -0.12 -4.44 6.53 31.99 0.21 -4.23 16 12 C -0.10 -3.12 3.02 -9.60 -0.03 -3.15 16 13 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 14 C 0.14 4.09 4.99 86.38 0.43 4.52 16 15 N -0.72 -17.93 5.30 -463.08 -2.46 -20.38 16 16 C 0.52 12.94 7.16 87.66 0.63 13.56 16 17 O -0.57 -18.27 15.98 -3.04 -0.05 -18.32 16 18 C -0.11 -1.98 2.68 -11.46 -0.03 -2.01 16 19 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 20 C -0.10 -1.41 4.46 30.62 0.14 -1.27 16 21 C -0.13 -0.90 6.08 30.67 0.19 -0.72 16 22 C 0.10 0.72 6.39 86.36 0.55 1.27 16 23 N -0.62 -9.79 2.97 -836.92 -2.49 -12.28 16 24 C 0.70 14.05 8.57 179.05 1.53 15.58 16 25 N -0.85 -8.33 8.78 -184.74 -1.62 -9.96 16 26 O -0.64 -20.23 16.60 -4.00 -0.07 -20.29 16 27 C 0.14 2.74 5.58 86.36 0.48 3.23 16 28 C 0.14 5.78 6.52 86.73 0.57 6.34 16 29 H 0.25 14.64 8.31 -92.71 -0.77 13.86 16 30 H 0.07 4.11 5.87 -2.38 -0.01 4.10 16 31 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 32 H 0.09 2.80 8.14 -2.39 -0.02 2.79 16 33 H 0.06 2.36 8.05 -2.39 -0.02 2.35 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.05 1.75 8.06 -2.39 -0.02 1.73 16 36 H 0.41 9.32 7.87 -92.70 -0.73 8.59 16 37 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 38 H 0.07 1.11 8.07 -2.39 -0.02 1.09 16 39 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.07 0.52 8.14 -2.39 -0.02 0.51 16 41 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.11 0.08 5.65 -2.39 -0.01 0.06 16 43 H 0.41 0.99 6.32 -92.71 -0.59 0.40 16 44 H 0.42 3.59 8.93 -92.71 -0.83 2.76 16 45 H 0.08 1.97 6.59 -2.38 -0.02 1.96 16 46 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.02 0.89 7.77 -2.39 -0.02 0.88 16 48 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -81.70 376.48 -1.43 -83.12 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -1.15 Total: 17.91 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: 6.51 Total: 24.54 kcal Atomic # 7 Polarization: -127.30 SS G_CDS: -8.70 Total: -136.00 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -0.11 Total: -38.61 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.03 kcal Total: -81.70 -1.43 -83.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028672461.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.255 kcal (2) G-P(sol) polarization free energy of solvation -81.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds