Wall clock time and date at job start Fri Apr 10 2020 18:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00337 * 2 1 4 4 H 1.48503 * 109.47285 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47321 * 299.99694 * 3 2 1 6 6 H 1.48496 * 109.47272 * 59.99632 * 3 2 1 7 7 C 1.38813 * 119.99516 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99939 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.47422 * 125.64461 * 0.04360 * 9 7 2 11 11 C 1.54911 * 104.83137 * 204.09019 * 10 9 7 12 12 C 1.55161 * 101.58017 * 322.99254 * 11 10 9 13 13 H 1.09001 * 110.86825 * 277.06177 * 12 11 10 14 14 C 1.53001 * 110.71965 * 153.86576 * 12 11 10 15 15 N 1.46501 * 109.47033 * 180.02562 * 14 12 11 16 16 C 1.34773 * 119.99824 * 179.97438 * 15 14 12 17 17 O 1.21276 * 120.00015 * 0.02562 * 16 15 14 18 18 C 1.50708 * 119.99499 * 179.97438 * 16 15 14 19 19 H 1.08998 * 109.70221 * 351.37072 * 18 16 15 20 20 C 1.53189 * 109.58172 * 111.72779 * 18 16 15 21 21 C 1.53039 * 109.31093 * 174.42034 * 20 18 16 22 22 C 1.53044 * 109.53827 * 298.63222 * 21 20 18 23 23 C 1.52760 * 109.38057 * 61.24202 * 22 21 20 24 24 N 1.46927 * 109.00820 * 305.58579 * 23 22 21 25 25 C 1.34778 * 120.63280 * 233.58852 * 24 23 22 26 26 N 1.34773 * 120.00005 * 5.23935 * 25 24 23 27 27 O 1.21588 * 120.00288 * 185.23953 * 25 24 23 28 28 C 1.47016 * 125.65097 * 179.97438 * 9 7 2 29 29 H 0.97010 * 119.99546 * 0.02562 * 1 2 3 30 30 H 1.09001 * 110.37095 * 322.92567 * 10 9 7 31 31 H 1.08998 * 110.37371 * 85.14274 * 10 9 7 32 32 H 1.08994 * 111.00548 * 204.91501 * 11 10 9 33 33 H 1.08998 * 111.00052 * 81.06545 * 11 10 9 34 34 H 1.09000 * 109.47020 * 60.02246 * 14 12 11 35 35 H 1.09001 * 109.46729 * 300.02085 * 14 12 11 36 36 H 0.96998 * 119.99760 * 359.97438 * 15 14 12 37 37 H 1.09002 * 109.49980 * 294.36663 * 20 18 16 38 38 H 1.09003 * 109.50332 * 54.43722 * 20 18 16 39 39 H 1.09003 * 109.46293 * 58.65362 * 21 20 18 40 40 H 1.09001 * 109.46077 * 178.62604 * 21 20 18 41 41 H 1.09001 * 109.49712 * 181.31539 * 22 21 20 42 42 H 1.08999 * 109.49878 * 301.41138 * 22 21 20 43 43 H 1.09000 * 109.50963 * 185.70966 * 23 22 21 44 44 H 1.08999 * 109.43707 * 65.42310 * 23 22 21 45 45 H 0.97006 * 119.99803 * 354.88177 * 26 25 24 46 46 H 0.96996 * 120.00297 * 174.60877 * 26 25 24 47 47 H 1.09003 * 109.88240 * 59.56023 * 28 9 7 48 48 H 1.09003 * 110.00855 * 298.46834 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 -0.1417 -2.5331 -0.0009 11 6 -0.4025 -3.9322 0.6109 12 6 0.7781 -4.7524 0.0271 13 1 0.5485 -5.1005 -0.9800 14 6 1.1218 -5.9313 0.9399 15 7 2.2382 -6.6853 0.3642 16 6 2.7157 -7.7732 1.0004 17 8 2.2209 -8.1283 2.0492 18 6 3.8637 -8.5492 0.4078 19 1 4.0751 -8.1830 -0.5968 20 6 5.1061 -8.3804 1.2880 21 6 6.2264 -9.2793 0.7598 22 6 5.7828 -10.7426 0.8260 23 6 4.5496 -10.9387 -0.0540 24 7 3.5159 -9.9755 0.3491 25 6 2.2739 -10.3930 0.6646 26 7 1.9985 -11.7113 0.7146 27 8 1.4018 -9.5803 0.9041 28 6 1.9315 -3.7276 0.0005 29 1 -0.4850 0.8402 -0.0004 30 1 -0.6001 -1.7587 0.6142 31 1 -0.5267 -2.4849 -1.0195 32 1 -1.3595 -4.3325 0.2766 33 1 -0.3539 -3.8978 1.6993 34 1 0.2533 -6.5831 1.0342 35 1 1.4047 -5.5581 1.9242 36 1 2.6336 -6.4015 -0.4748 37 1 5.4316 -7.3405 1.2624 38 1 4.8665 -8.6616 2.3135 39 1 6.4485 -9.0136 -0.2737 40 1 7.1195 -9.1429 1.3697 41 1 6.5898 -11.3838 0.4716 42 1 5.5369 -11.0020 1.8557 43 1 4.1717 -11.9535 0.0699 44 1 4.8181 -10.7713 -1.0971 45 1 2.6722 -12.3579 0.4518 46 1 1.1279 -12.0139 1.0171 47 1 2.5575 -3.8512 0.8843 48 1 2.5301 -3.8661 -0.8998 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028919522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:55 Heat of formation + Delta-G solvation = -22.070347 kcal Electronic energy + Delta-G solvation = -28639.733661 eV Core-core repulsion = 24730.956208 eV Total energy + Delta-G solvation = -3908.777452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.08797 -38.78089 -37.66289 -37.32666 -34.43424 -33.95049 -32.69681 -32.40608 -31.48343 -29.68223 -28.16345 -26.18021 -25.27461 -24.20430 -23.13487 -21.79383 -20.73142 -20.01938 -19.73303 -19.44981 -18.46390 -17.18804 -16.85772 -16.47786 -16.02869 -15.36275 -15.28362 -15.05837 -14.76817 -14.61115 -14.47049 -14.32890 -13.78307 -13.55089 -13.54158 -13.15578 -12.92794 -12.41674 -12.36999 -11.87800 -11.66754 -11.59365 -11.50008 -11.37075 -11.26104 -11.07966 -10.89401 -10.78079 -10.33280 -10.06030 -9.90398 -9.89697 -9.77282 -9.67931 -9.50228 -9.22685 -8.91401 -8.60682 -8.44343 -6.77725 -5.60837 -3.02273 2.32471 3.01591 3.33368 3.40060 3.42264 3.47304 3.50108 3.94461 4.34006 4.42737 4.49844 4.52765 4.68966 4.83220 4.91843 5.02952 5.08793 5.29724 5.35196 5.43585 5.43863 5.47473 5.51123 5.61940 5.65491 5.68709 5.83269 5.96752 6.03295 6.09908 6.27205 6.33059 6.44679 6.48796 6.63253 6.69885 6.71826 6.77297 6.90900 7.02710 7.58439 7.66396 7.67988 7.85738 7.91606 8.41862 8.48330 8.74437 9.26912 9.88122 10.53768 11.43127 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.021787 B = 0.002663 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.890092 B =10513.456472 C =11512.222901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.114 4.114 13 H 0.074 0.926 14 C 0.142 3.858 15 N -0.725 5.725 16 C 0.525 3.475 17 O -0.509 6.509 18 C 0.147 3.853 19 H 0.086 0.914 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.138 4.138 23 C 0.115 3.885 24 N -0.621 5.621 25 C 0.699 3.301 26 N -0.871 5.871 27 O -0.546 6.546 28 C 0.143 3.857 29 H 0.251 0.749 30 H 0.106 0.894 31 H 0.011 0.989 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.395 0.605 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.391 0.609 46 H 0.412 0.588 47 H 0.024 0.976 48 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.081 -26.357 -1.567 28.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.209 4.209 3 Si 0.745 3.255 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.133 4.133 13 H 0.092 0.908 14 C 0.018 3.982 15 N -0.378 5.378 16 C 0.309 3.691 17 O -0.383 6.383 18 C 0.039 3.961 19 H 0.104 0.896 20 C -0.164 4.164 21 C -0.155 4.155 22 C -0.177 4.177 23 C -0.008 4.008 24 N -0.362 5.362 25 C 0.398 3.602 26 N -0.442 5.442 27 O -0.420 6.420 28 C 0.016 3.984 29 H 0.062 0.938 30 H 0.124 0.876 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.228 0.772 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.221 0.779 46 H 0.244 0.756 47 H 0.042 0.958 48 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 10.177 -25.698 -0.648 27.647 hybrid contribution 0.714 0.363 -0.599 1.000 sum 10.891 -25.335 -1.247 27.605 Atomic orbital electron populations 1.69823 1.04882 1.24567 1.57836 1.24795 0.95734 0.97711 1.02620 0.86000 0.78617 0.83686 0.77216 1.20564 1.21813 1.21770 1.19126 0.90497 0.82529 1.42714 0.90515 1.44526 1.02043 0.99775 1.86765 1.21924 0.84637 0.92583 0.98134 1.22991 0.95654 0.98480 1.00280 1.22438 0.98096 0.94102 0.98680 0.90793 1.21311 0.88498 0.91734 0.96632 1.45859 1.36434 1.29075 1.26385 1.19651 0.83289 0.80370 0.85744 1.90691 1.57758 1.66137 1.23703 1.20986 0.94490 0.80505 1.00092 0.89613 1.21868 0.93246 1.01158 1.00114 1.21498 0.97907 0.94189 1.01876 1.21886 0.97291 0.97575 1.00900 1.21558 0.88394 0.92072 0.98782 1.46990 1.09798 1.06373 1.73027 1.15959 0.82916 0.83126 0.78161 1.43170 1.20081 1.05706 1.75247 1.91182 1.45660 1.51115 1.54041 1.21312 0.93565 0.85913 0.97563 0.93828 0.87614 0.97070 0.92207 0.91888 0.91760 0.91805 0.77168 0.89886 0.90378 0.91357 0.91026 0.90463 0.91248 0.90325 0.91056 0.77928 0.75554 0.95813 0.96540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.42 10.09 55.49 0.56 -26.86 16 2 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.22 -6.26 10.27 -15.06 -0.15 -6.42 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.69 16 9 N -0.61 -15.91 3.39 -170.08 -0.58 -16.49 16 10 C 0.15 3.81 5.89 -2.53 -0.01 3.80 16 11 C -0.13 -2.69 6.53 -24.58 -0.16 -2.86 16 12 C -0.11 -2.07 3.02 -88.79 -0.27 -2.34 16 13 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 14 C 0.14 2.43 4.99 -4.04 -0.02 2.41 16 15 N -0.73 -10.90 5.40 -60.29 -0.33 -11.22 16 16 C 0.53 8.20 4.87 -10.98 -0.05 8.15 16 17 O -0.51 -10.11 13.85 -20.04 -0.28 -10.39 16 18 C 0.15 1.62 3.31 -68.75 -0.23 1.39 16 19 H 0.09 0.76 7.95 -51.93 -0.41 0.35 16 20 C -0.13 -1.15 5.35 -26.61 -0.14 -1.29 16 21 C -0.12 -0.71 5.89 -26.69 -0.16 -0.86 16 22 C -0.14 -0.70 6.06 -26.83 -0.16 -0.86 16 23 C 0.12 0.64 6.41 -3.93 -0.03 0.62 16 24 N -0.62 -6.25 2.98 -172.49 -0.51 -6.76 16 25 C 0.70 8.97 8.19 -86.92 -0.71 8.26 16 26 N -0.87 -7.02 8.79 27.63 0.24 -6.77 16 27 O -0.55 -9.90 12.46 -20.31 -0.25 -10.16 16 28 C 0.14 3.02 6.52 -3.07 -0.02 3.00 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.11 2.97 5.87 -51.93 -0.30 2.67 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.26 8.05 -51.93 -0.42 0.84 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.19 8.06 -51.93 -0.42 0.77 16 36 H 0.39 5.02 8.19 -40.82 -0.33 4.68 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.88 8.13 -51.93 -0.42 0.45 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.27 5.56 -51.93 -0.29 -0.02 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.39 1.78 6.29 -40.82 -0.26 1.53 16 46 H 0.41 3.07 8.93 -40.82 -0.36 2.70 16 47 H 0.02 0.51 7.77 -51.93 -0.40 0.11 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 371.14 15.07 5.59 5.59 Total: -1.00 -37.70 371.14 -10.61 -48.31 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -7.82 Total: 4.86 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: -2.21 Total: 12.51 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: -0.61 Total: -68.11 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.53 Total: -20.54 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.70 -10.61 -48.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028919522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.244 kcal (2) G-P(sol) polarization free energy of solvation -37.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds