Wall clock time and date at job start Fri Apr 10 2020 18:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00337 * 2 1 4 4 H 1.48503 * 109.47285 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47321 * 299.99694 * 3 2 1 6 6 H 1.48496 * 109.47272 * 59.99632 * 3 2 1 7 7 C 1.38813 * 119.99516 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99939 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.47422 * 125.64461 * 0.04360 * 9 7 2 11 11 C 1.54911 * 104.83137 * 204.09019 * 10 9 7 12 12 C 1.55161 * 101.58017 * 322.99254 * 11 10 9 13 13 H 1.09001 * 110.86825 * 277.06177 * 12 11 10 14 14 C 1.53001 * 110.71965 * 153.86576 * 12 11 10 15 15 N 1.46501 * 109.47033 * 180.02562 * 14 12 11 16 16 C 1.34773 * 119.99824 * 179.97438 * 15 14 12 17 17 O 1.21276 * 120.00015 * 0.02562 * 16 15 14 18 18 C 1.50708 * 119.99499 * 179.97438 * 16 15 14 19 19 H 1.08998 * 109.70221 * 351.37072 * 18 16 15 20 20 C 1.53189 * 109.58172 * 111.72779 * 18 16 15 21 21 C 1.53039 * 109.31093 * 174.42034 * 20 18 16 22 22 C 1.53044 * 109.53827 * 298.63222 * 21 20 18 23 23 C 1.52760 * 109.38057 * 61.24202 * 22 21 20 24 24 N 1.46927 * 109.00820 * 305.58579 * 23 22 21 25 25 C 1.34778 * 120.63280 * 233.58852 * 24 23 22 26 26 N 1.34773 * 120.00005 * 5.23935 * 25 24 23 27 27 O 1.21588 * 120.00288 * 185.23953 * 25 24 23 28 28 C 1.47016 * 125.65097 * 179.97438 * 9 7 2 29 29 H 0.97010 * 119.99546 * 0.02562 * 1 2 3 30 30 H 1.09001 * 110.37095 * 322.92567 * 10 9 7 31 31 H 1.08998 * 110.37371 * 85.14274 * 10 9 7 32 32 H 1.08994 * 111.00548 * 204.91501 * 11 10 9 33 33 H 1.08998 * 111.00052 * 81.06545 * 11 10 9 34 34 H 1.09000 * 109.47020 * 60.02246 * 14 12 11 35 35 H 1.09001 * 109.46729 * 300.02085 * 14 12 11 36 36 H 0.96998 * 119.99760 * 359.97438 * 15 14 12 37 37 H 1.09002 * 109.49980 * 294.36663 * 20 18 16 38 38 H 1.09003 * 109.50332 * 54.43722 * 20 18 16 39 39 H 1.09003 * 109.46293 * 58.65362 * 21 20 18 40 40 H 1.09001 * 109.46077 * 178.62604 * 21 20 18 41 41 H 1.09001 * 109.49712 * 181.31539 * 22 21 20 42 42 H 1.08999 * 109.49878 * 301.41138 * 22 21 20 43 43 H 1.09000 * 109.50963 * 185.70966 * 23 22 21 44 44 H 1.08999 * 109.43707 * 65.42310 * 23 22 21 45 45 H 0.97006 * 119.99803 * 354.88177 * 26 25 24 46 46 H 0.96996 * 120.00297 * 174.60877 * 26 25 24 47 47 H 1.09003 * 109.88240 * 59.56023 * 28 9 7 48 48 H 1.09003 * 110.00855 * 298.46834 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 -0.1417 -2.5331 -0.0009 11 6 -0.4025 -3.9322 0.6109 12 6 0.7781 -4.7524 0.0271 13 1 0.5485 -5.1005 -0.9800 14 6 1.1218 -5.9313 0.9399 15 7 2.2382 -6.6853 0.3642 16 6 2.7157 -7.7732 1.0004 17 8 2.2209 -8.1283 2.0492 18 6 3.8637 -8.5492 0.4078 19 1 4.0751 -8.1830 -0.5968 20 6 5.1061 -8.3804 1.2880 21 6 6.2264 -9.2793 0.7598 22 6 5.7828 -10.7426 0.8260 23 6 4.5496 -10.9387 -0.0540 24 7 3.5159 -9.9755 0.3491 25 6 2.2739 -10.3930 0.6646 26 7 1.9985 -11.7113 0.7146 27 8 1.4018 -9.5803 0.9041 28 6 1.9315 -3.7276 0.0005 29 1 -0.4850 0.8402 -0.0004 30 1 -0.6001 -1.7587 0.6142 31 1 -0.5267 -2.4849 -1.0195 32 1 -1.3595 -4.3325 0.2766 33 1 -0.3539 -3.8978 1.6993 34 1 0.2533 -6.5831 1.0342 35 1 1.4047 -5.5581 1.9242 36 1 2.6336 -6.4015 -0.4748 37 1 5.4316 -7.3405 1.2624 38 1 4.8665 -8.6616 2.3135 39 1 6.4485 -9.0136 -0.2737 40 1 7.1195 -9.1429 1.3697 41 1 6.5898 -11.3838 0.4716 42 1 5.5369 -11.0020 1.8557 43 1 4.1717 -11.9535 0.0699 44 1 4.8181 -10.7713 -1.0971 45 1 2.6722 -12.3579 0.4518 46 1 1.1279 -12.0139 1.0171 47 1 2.5575 -3.8512 0.8843 48 1 2.5301 -3.8661 -0.8998 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028919522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:54 Heat of formation + Delta-G solvation = -50.221962 kcal Electronic energy + Delta-G solvation = -28640.954406 eV Core-core repulsion = 24730.956208 eV Total energy + Delta-G solvation = -3909.998198 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.99635 -40.04431 -39.07046 -38.30169 -35.94972 -34.87223 -34.26191 -33.33360 -32.31360 -31.47722 -29.84228 -27.51097 -26.60283 -25.32948 -24.35505 -22.60857 -22.18299 -21.39731 -21.16471 -20.41398 -19.43118 -18.82572 -17.98525 -17.60614 -17.23092 -16.72947 -16.51842 -16.29274 -15.90885 -15.76682 -15.56077 -15.23975 -15.14065 -14.62568 -14.48525 -14.27309 -14.21479 -13.83734 -13.56693 -13.53630 -13.26443 -13.05616 -12.79049 -12.68456 -12.52614 -12.12555 -11.97247 -11.90502 -11.82087 -11.73575 -11.61726 -11.58320 -11.36887 -10.91541 -10.74954 -10.68014 -10.41833 -9.83399 -9.54532 -8.87876 -7.76707 -5.21204 1.46949 1.48466 1.49383 1.58742 2.02593 2.25731 2.39567 2.50371 3.31195 3.33200 3.62341 3.69988 3.80899 3.85558 3.92500 3.99760 4.06373 4.09297 4.13327 4.25711 4.45081 4.51165 4.62555 4.64199 4.70585 4.81768 4.84165 4.90329 4.92561 5.03624 5.06059 5.11244 5.12695 5.22207 5.36465 5.45336 5.47834 5.48873 5.59277 5.64374 5.81592 5.82401 6.04450 6.31530 6.70404 6.95943 7.11332 7.47344 7.76405 7.79088 8.43610 9.25836 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.021787 B = 0.002663 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.890092 B =10513.456472 C =11512.222901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.071 4.071 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.237 4.237 8 H 0.082 0.918 9 N -0.628 5.628 10 C 0.155 3.845 11 C -0.124 4.124 12 C -0.093 4.093 13 H 0.091 0.909 14 C 0.158 3.842 15 N -0.721 5.721 16 C 0.519 3.481 17 O -0.556 6.556 18 C 0.148 3.852 19 H 0.114 0.886 20 C -0.122 4.122 21 C -0.113 4.113 22 C -0.135 4.135 23 C 0.108 3.892 24 N -0.619 5.619 25 C 0.686 3.314 26 N -0.851 5.851 27 O -0.607 6.607 28 C 0.142 3.858 29 H 0.246 0.754 30 H 0.071 0.929 31 H -0.009 1.009 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.408 0.592 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.053 0.947 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.409 0.591 46 H 0.416 0.584 47 H 0.021 0.979 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.681 -28.425 -3.040 31.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.263 4.263 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.366 4.366 8 H 0.100 0.900 9 N -0.354 5.354 10 C 0.030 3.970 11 C -0.163 4.163 12 C -0.112 4.112 13 H 0.110 0.890 14 C 0.033 3.967 15 N -0.374 5.374 16 C 0.306 3.694 17 O -0.433 6.433 18 C 0.040 3.960 19 H 0.132 0.868 20 C -0.161 4.161 21 C -0.150 4.150 22 C -0.173 4.173 23 C -0.014 4.014 24 N -0.360 5.360 25 C 0.385 3.615 26 N -0.424 5.424 27 O -0.485 6.485 28 C 0.017 3.983 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.009 0.991 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.244 0.756 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.072 0.928 43 H 0.118 0.882 44 H 0.112 0.888 45 H 0.243 0.757 46 H 0.248 0.752 47 H 0.039 0.961 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 12.859 -27.850 -2.161 30.751 hybrid contribution -0.075 0.938 -0.130 0.950 sum 12.785 -26.912 -2.291 29.882 Atomic orbital electron populations 1.70077 1.06304 1.24925 1.58797 1.25678 0.96673 1.01125 1.02834 0.84948 0.78148 0.79186 0.76682 1.18896 1.21841 1.21991 1.19518 0.91074 0.83732 1.42249 0.89968 1.44843 1.02732 1.01073 1.86798 1.21700 0.84261 0.94491 0.96589 1.22847 0.97744 0.95841 0.99877 1.22263 0.95987 0.93339 0.99602 0.89041 1.20933 0.89027 0.91142 0.95587 1.45783 1.35825 1.28971 1.26836 1.20493 0.83806 0.80033 0.85098 1.90660 1.59555 1.67182 1.25941 1.21053 0.92797 0.80750 1.01352 0.86830 1.21864 0.93645 1.02207 0.98342 1.21517 0.96637 0.94018 1.02853 1.21889 0.97893 0.97404 1.00081 1.21943 0.87383 0.92035 0.99989 1.47102 1.09887 1.06657 1.72335 1.16340 0.83220 0.83899 0.78006 1.42941 1.20782 1.04529 1.74099 1.91136 1.47670 1.52955 1.56765 1.21443 0.94493 0.84417 0.97955 0.94375 0.91066 0.99079 0.89705 0.92208 0.92794 0.93644 0.75639 0.89720 0.93258 0.89512 0.90211 0.87462 0.92814 0.88156 0.88802 0.75713 0.75190 0.96052 0.94940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.10 10.09 21.65 0.22 -57.88 16 2 C -0.07 -4.11 5.49 84.86 0.47 -3.65 16 3 Si 0.98 46.40 29.55 68.60 2.03 48.43 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 7 C -0.24 -13.56 10.27 84.03 0.86 -12.70 16 8 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 9 N -0.63 -33.36 3.39 -692.00 -2.35 -35.71 16 10 C 0.15 7.94 5.89 86.86 0.51 8.46 16 11 C -0.12 -4.95 6.53 31.99 0.21 -4.74 16 12 C -0.09 -3.30 3.02 -9.61 -0.03 -3.33 16 13 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 14 C 0.16 5.41 4.99 86.38 0.43 5.84 16 15 N -0.72 -21.24 5.40 -463.06 -2.50 -23.74 16 16 C 0.52 16.20 4.87 87.66 0.43 16.63 16 17 O -0.56 -22.86 13.85 21.46 0.30 -22.57 16 18 C 0.15 3.03 3.31 44.23 0.15 3.17 16 19 H 0.11 1.67 7.95 -2.39 -0.02 1.65 16 20 C -0.12 -2.06 5.35 30.67 0.16 -1.90 16 21 C -0.11 -1.00 5.89 30.62 0.18 -0.82 16 22 C -0.13 -0.89 6.06 30.53 0.19 -0.70 16 23 C 0.11 0.80 6.41 86.22 0.55 1.35 16 24 N -0.62 -11.29 2.98 -817.89 -2.44 -13.72 16 25 C 0.69 17.07 8.19 179.06 1.47 18.54 16 26 N -0.85 -12.43 8.79 -184.75 -1.62 -14.05 16 27 O -0.61 -22.38 12.46 20.48 0.26 -22.12 16 28 C 0.14 5.92 6.52 86.73 0.57 6.48 16 29 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 30 H 0.07 4.17 5.87 -2.39 -0.01 4.16 16 31 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.06 2.42 8.05 -2.39 -0.02 2.40 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.05 1.73 8.06 -2.39 -0.02 1.71 16 36 H 0.41 9.67 8.19 -92.71 -0.76 8.91 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.05 1.12 8.13 -2.39 -0.02 1.10 16 39 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.10 0.29 5.56 -2.39 -0.01 0.27 16 44 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.41 2.63 6.29 -92.70 -0.58 2.05 16 46 H 0.42 5.79 8.93 -92.71 -0.83 4.96 16 47 H 0.02 0.91 7.77 -2.39 -0.02 0.89 16 48 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -86.25 371.14 -1.15 -87.40 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -1.18 Total: 21.31 kcal Atomic # 6 Polarization: 26.50 SS G_CDS: 6.14 Total: 32.64 kcal Atomic # 7 Polarization: -136.41 SS G_CDS: -8.69 Total: -145.10 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: 0.55 Total: -44.69 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -86.25 -1.15 -87.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028919522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.179 kcal (2) G-P(sol) polarization free energy of solvation -86.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds