Wall clock time and date at job start Fri Apr 10 2020 18:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00015 * 2 1 4 4 H 1.48500 * 109.47086 * 239.99792 * 3 2 1 5 5 H 1.48496 * 109.47415 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47381 * 119.99964 * 3 2 1 7 7 C 1.38814 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99744 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.64457 * 0.03265 * 9 7 2 11 11 C 1.54912 * 104.83028 * 204.09613 * 10 9 7 12 12 C 1.55163 * 101.58317 * 322.99354 * 11 10 9 13 13 H 1.09000 * 110.86746 * 277.06864 * 12 11 10 14 14 C 1.52994 * 110.71838 * 153.86512 * 12 11 10 15 15 N 1.46505 * 109.47069 * 180.02562 * 14 12 11 16 16 C 1.34770 * 119.99976 * 179.97438 * 15 14 12 17 17 O 1.21287 * 120.00471 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99674 * 179.97438 * 16 15 14 19 19 C 1.53044 * 109.46043 * 180.02562 * 18 16 15 20 20 C 1.53186 * 109.34196 * 178.63152 * 19 18 16 21 21 N 1.46933 * 108.77264 * 54.62171 * 20 19 18 22 22 C 1.34778 * 120.62772 * 126.36917 * 21 20 19 23 23 N 1.34779 * 119.99600 * 174.76821 * 22 21 20 24 24 O 1.21584 * 120.00580 * 354.77286 * 22 21 20 25 25 C 1.46919 * 118.73708 * 306.39120 * 21 20 19 26 26 C 1.53038 * 109.48676 * 59.92332 * 18 16 15 27 27 C 1.47017 * 125.65232 * 179.97438 * 9 7 2 28 28 H 0.97004 * 119.99568 * 0.02562 * 1 2 3 29 29 H 1.08998 * 110.37017 * 322.93461 * 10 9 7 30 30 H 1.08997 * 110.36266 * 85.15197 * 10 9 7 31 31 H 1.08994 * 111.00555 * 204.91681 * 11 10 9 32 32 H 1.09000 * 111.00310 * 81.06887 * 11 10 9 33 33 H 1.09000 * 109.47820 * 60.02209 * 14 12 11 34 34 H 1.09009 * 109.47203 * 300.02431 * 14 12 11 35 35 H 0.97000 * 119.99838 * 359.97438 * 15 14 12 36 36 H 1.08994 * 109.45396 * 299.96935 * 18 16 15 37 37 H 1.09008 * 109.49410 * 58.66715 * 19 18 16 38 38 H 1.08998 * 109.49875 * 298.60357 * 19 18 16 39 39 H 1.09001 * 109.58842 * 174.40575 * 20 19 18 40 40 H 1.08996 * 109.59335 * 294.69312 * 20 19 18 41 41 H 0.96993 * 120.00055 * 4.97377 * 23 22 21 42 42 H 0.97003 * 119.99672 * 184.97013 * 23 22 21 43 43 H 1.09001 * 109.58288 * 173.39691 * 25 21 20 44 44 H 1.09002 * 109.58985 * 293.82043 * 25 21 20 45 45 H 1.09004 * 109.46955 * 61.39552 * 26 18 16 46 46 H 1.09002 * 109.51977 * 301.33593 * 26 18 16 47 47 H 1.09003 * 109.88214 * 59.54873 * 27 9 7 48 48 H 1.09006 * 110.00866 * 298.46597 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5331 -0.0007 11 6 -0.4022 -3.9322 0.6112 12 6 0.7784 -4.7525 0.0273 13 1 0.5487 -5.1005 -0.9798 14 6 1.1223 -5.9312 0.9400 15 7 2.2386 -6.6852 0.3642 16 6 2.7162 -7.7731 1.0004 17 8 2.2216 -8.1282 2.0494 18 6 3.8642 -8.5491 0.4077 19 6 4.2081 -9.7280 1.3210 20 6 5.3524 -10.5345 0.6992 21 7 6.4786 -9.6292 0.4326 22 6 7.7092 -9.9058 0.9076 23 7 8.7537 -9.1244 0.5684 24 8 7.8772 -10.8602 1.6419 25 6 6.2375 -8.4166 -0.3611 26 6 5.0831 -7.6337 0.2721 27 6 1.9317 -3.7275 0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5998 -1.7587 0.6144 30 1 -0.5266 -2.4850 -1.0192 31 1 -1.3592 -4.3327 0.2770 32 1 -0.3535 -3.8979 1.6996 33 1 0.2538 -6.5831 1.0345 34 1 1.4052 -5.5580 1.9244 35 1 2.6339 -6.4015 -0.4749 36 1 3.5802 -8.9230 -0.5759 37 1 3.3325 -10.3673 1.4351 38 1 4.5153 -9.3541 2.2977 39 1 5.6673 -11.3155 1.3913 40 1 5.0159 -10.9869 -0.2336 41 1 8.6088 -8.3226 0.0422 42 1 9.6503 -9.3640 0.8506 43 1 7.1364 -7.8001 -0.3685 44 1 5.9739 -8.6941 -1.3816 45 1 5.3824 -7.2787 1.2583 46 1 4.8306 -6.7822 -0.3599 47 1 2.5579 -3.8510 0.8842 48 1 2.5303 -3.8660 -0.8999 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028977083.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:59 Heat of formation + Delta-G solvation = -45.863012 kcal Electronic energy + Delta-G solvation = -27830.079951 eV Core-core repulsion = 23920.270772 eV Total energy + Delta-G solvation = -3909.809179 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.86602 -39.79748 -37.88451 -37.18531 -34.73136 -34.31451 -33.01977 -32.37997 -31.27004 -29.85645 -28.37136 -26.54903 -25.35399 -23.76495 -23.48702 -22.13900 -20.70593 -20.06519 -19.86899 -19.55012 -18.75081 -17.33766 -17.17537 -16.78336 -16.04094 -15.79651 -15.61158 -15.14188 -14.97853 -14.66534 -14.65286 -14.13984 -13.95197 -13.66539 -13.61254 -13.33961 -12.88967 -12.63962 -12.55775 -12.09873 -11.81893 -11.75810 -11.67052 -11.52218 -11.12543 -11.01890 -10.99793 -10.82714 -10.50946 -10.46281 -10.19653 -10.06668 -10.03211 -9.92968 -9.74296 -9.53462 -9.01621 -8.96265 -8.69118 -6.88368 -5.69746 -3.11775 2.41585 2.60383 2.86389 3.18000 3.36717 3.41028 3.42548 3.72945 4.26184 4.29563 4.43670 4.47130 4.67481 4.86812 4.92185 5.03188 5.04074 5.12173 5.21647 5.27732 5.34837 5.37967 5.48096 5.50212 5.59841 5.66367 5.72951 5.84336 6.01094 6.03668 6.07357 6.07865 6.29567 6.41534 6.42036 6.48862 6.54650 6.57260 6.67177 6.85416 7.46792 7.48479 7.50721 7.57411 7.81530 8.21163 8.27679 8.32260 9.17491 9.78615 10.43286 11.34094 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016538 B = 0.002469 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.702954 B =11338.394477 C =12728.901808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.225 4.225 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.151 3.849 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.075 0.925 14 C 0.132 3.868 15 N -0.724 5.724 16 C 0.514 3.486 17 O -0.542 6.542 18 C -0.106 4.106 19 C -0.114 4.114 20 C 0.128 3.872 21 N -0.628 5.628 22 C 0.710 3.290 23 N -0.869 5.869 24 O -0.594 6.594 25 C 0.114 3.886 26 C -0.129 4.129 27 C 0.143 3.857 28 H 0.253 0.747 29 H 0.107 0.893 30 H 0.012 0.988 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.400 0.600 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.396 0.604 42 H 0.413 0.587 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.023 0.977 48 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.679 -18.338 -4.063 21.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.175 4.175 12 C -0.134 4.134 13 H 0.094 0.906 14 C 0.008 3.992 15 N -0.375 5.375 16 C 0.300 3.700 17 O -0.419 6.419 18 C -0.127 4.127 19 C -0.153 4.153 20 C 0.005 3.995 21 N -0.367 5.367 22 C 0.410 3.590 23 N -0.439 5.439 24 O -0.473 6.473 25 C -0.010 4.010 26 C -0.168 4.168 27 C 0.017 3.983 28 H 0.064 0.936 29 H 0.125 0.875 30 H 0.030 0.970 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.235 0.765 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.227 0.773 42 H 0.245 0.755 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.104 0.896 47 H 0.041 0.959 48 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 10.205 -19.013 -2.828 21.763 hybrid contribution 0.916 1.499 -0.755 1.912 sum 11.121 -17.514 -3.583 21.054 Atomic orbital electron populations 1.69785 1.04909 1.24948 1.57415 1.24795 0.95734 0.97755 1.02344 0.86151 0.78419 0.83024 0.77880 1.21224 1.21533 1.21134 1.19015 0.90431 0.82505 1.43369 0.90615 1.44491 1.01989 0.99701 1.86847 1.21938 0.84658 0.92540 0.98210 1.23006 0.95553 0.98574 1.00326 1.22444 0.98332 0.94025 0.98583 0.90621 1.21454 0.88274 0.92186 0.97246 1.46106 1.36194 1.28669 1.26527 1.20532 0.84009 0.80695 0.84795 1.90709 1.60191 1.68199 1.22798 1.21314 0.93722 0.96495 1.01202 1.21757 0.98415 0.96062 0.99077 1.21552 0.84655 0.92242 1.01033 1.47290 1.07790 1.25224 1.56393 1.15852 0.80737 0.82503 0.79947 1.43180 1.09493 1.29639 1.61596 1.90960 1.83961 1.31761 1.40571 1.21647 0.98623 0.85756 0.94954 1.21950 0.93970 0.97863 1.03000 1.21301 0.93462 0.86023 0.97556 0.93627 0.87538 0.96987 0.92118 0.91839 0.91712 0.91316 0.76541 0.88269 0.89684 0.90581 0.88407 0.91390 0.77306 0.75473 0.90043 0.90649 0.90523 0.89612 0.95901 0.96549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.46 10.09 55.49 0.56 -25.90 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.22 -6.13 10.27 -15.06 -0.15 -6.28 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -14.98 3.39 -170.07 -0.58 -15.56 16 10 C 0.15 3.56 5.89 -2.52 -0.01 3.54 16 11 C -0.14 -2.43 6.53 -24.58 -0.16 -2.59 16 12 C -0.11 -1.80 3.02 -88.79 -0.27 -2.07 16 13 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 14 C 0.13 1.84 4.99 -4.04 -0.02 1.82 16 15 N -0.72 -8.28 5.29 -60.29 -0.32 -8.59 16 16 C 0.51 6.19 7.16 -10.99 -0.08 6.11 16 17 O -0.54 -8.82 15.98 5.55 0.09 -8.73 16 18 C -0.11 -0.86 2.49 -91.73 -0.23 -1.09 16 19 C -0.11 -1.03 4.65 -26.61 -0.12 -1.16 16 20 C 0.13 1.05 6.44 -3.71 -0.02 1.02 16 21 N -0.63 -5.07 2.97 -178.51 -0.53 -5.60 16 22 C 0.71 7.20 8.57 -86.91 -0.74 6.45 16 23 N -0.87 -5.29 8.78 27.63 0.24 -5.04 16 24 O -0.59 -8.66 16.60 5.29 0.09 -8.57 16 25 C 0.11 0.59 6.39 -3.72 -0.02 0.57 16 26 C -0.13 -0.87 5.27 -26.62 -0.14 -1.01 16 27 C 0.14 2.75 6.52 -3.07 -0.02 2.73 16 28 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.11 2.85 5.87 -51.93 -0.30 2.54 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.09 8.06 -51.92 -0.42 0.67 16 35 H 0.40 3.69 7.72 -40.82 -0.32 3.38 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.78 8.07 -51.92 -0.42 0.36 16 38 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 39 H 0.10 0.96 7.00 -51.93 -0.36 0.60 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.40 1.37 6.32 -40.82 -0.26 1.11 16 42 H 0.41 2.10 8.93 -40.82 -0.36 1.73 16 43 H 0.08 0.28 5.65 -51.93 -0.29 -0.02 16 44 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.09 0.48 7.53 -51.93 -0.39 0.09 16 47 H 0.02 0.45 7.77 -51.93 -0.40 0.05 16 48 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -35.71 376.16 -9.62 -45.33 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.72 Total: 2.72 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -2.10 Total: 7.66 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.62 Total: -60.70 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: 0.18 Total: -17.30 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.71 -9.62 -45.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028977083.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.530 kcal (2) G-P(sol) polarization free energy of solvation -35.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds