Wall clock time and date at job start Fri Apr 10 2020 18:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00015 * 2 1 4 4 H 1.48500 * 109.47086 * 239.99792 * 3 2 1 5 5 H 1.48496 * 109.47415 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47381 * 119.99964 * 3 2 1 7 7 C 1.38814 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99744 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.64457 * 0.03265 * 9 7 2 11 11 C 1.54912 * 104.83028 * 204.09613 * 10 9 7 12 12 C 1.55163 * 101.58317 * 322.99354 * 11 10 9 13 13 H 1.09000 * 110.86746 * 277.06864 * 12 11 10 14 14 C 1.52994 * 110.71838 * 153.86512 * 12 11 10 15 15 N 1.46505 * 109.47069 * 180.02562 * 14 12 11 16 16 C 1.34770 * 119.99976 * 179.97438 * 15 14 12 17 17 O 1.21287 * 120.00471 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99674 * 179.97438 * 16 15 14 19 19 C 1.53044 * 109.46043 * 180.02562 * 18 16 15 20 20 C 1.53186 * 109.34196 * 178.63152 * 19 18 16 21 21 N 1.46933 * 108.77264 * 54.62171 * 20 19 18 22 22 C 1.34778 * 120.62772 * 126.36917 * 21 20 19 23 23 N 1.34779 * 119.99600 * 174.76821 * 22 21 20 24 24 O 1.21584 * 120.00580 * 354.77286 * 22 21 20 25 25 C 1.46919 * 118.73708 * 306.39120 * 21 20 19 26 26 C 1.53038 * 109.48676 * 59.92332 * 18 16 15 27 27 C 1.47017 * 125.65232 * 179.97438 * 9 7 2 28 28 H 0.97004 * 119.99568 * 0.02562 * 1 2 3 29 29 H 1.08998 * 110.37017 * 322.93461 * 10 9 7 30 30 H 1.08997 * 110.36266 * 85.15197 * 10 9 7 31 31 H 1.08994 * 111.00555 * 204.91681 * 11 10 9 32 32 H 1.09000 * 111.00310 * 81.06887 * 11 10 9 33 33 H 1.09000 * 109.47820 * 60.02209 * 14 12 11 34 34 H 1.09009 * 109.47203 * 300.02431 * 14 12 11 35 35 H 0.97000 * 119.99838 * 359.97438 * 15 14 12 36 36 H 1.08994 * 109.45396 * 299.96935 * 18 16 15 37 37 H 1.09008 * 109.49410 * 58.66715 * 19 18 16 38 38 H 1.08998 * 109.49875 * 298.60357 * 19 18 16 39 39 H 1.09001 * 109.58842 * 174.40575 * 20 19 18 40 40 H 1.08996 * 109.59335 * 294.69312 * 20 19 18 41 41 H 0.96993 * 120.00055 * 4.97377 * 23 22 21 42 42 H 0.97003 * 119.99672 * 184.97013 * 23 22 21 43 43 H 1.09001 * 109.58288 * 173.39691 * 25 21 20 44 44 H 1.09002 * 109.58985 * 293.82043 * 25 21 20 45 45 H 1.09004 * 109.46955 * 61.39552 * 26 18 16 46 46 H 1.09002 * 109.51977 * 301.33593 * 26 18 16 47 47 H 1.09003 * 109.88214 * 59.54873 * 27 9 7 48 48 H 1.09006 * 110.00866 * 298.46597 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5331 -0.0007 11 6 -0.4022 -3.9322 0.6112 12 6 0.7784 -4.7525 0.0273 13 1 0.5487 -5.1005 -0.9798 14 6 1.1223 -5.9312 0.9400 15 7 2.2386 -6.6852 0.3642 16 6 2.7162 -7.7731 1.0004 17 8 2.2216 -8.1282 2.0494 18 6 3.8642 -8.5491 0.4077 19 6 4.2081 -9.7280 1.3210 20 6 5.3524 -10.5345 0.6992 21 7 6.4786 -9.6292 0.4326 22 6 7.7092 -9.9058 0.9076 23 7 8.7537 -9.1244 0.5684 24 8 7.8772 -10.8602 1.6419 25 6 6.2375 -8.4166 -0.3611 26 6 5.0831 -7.6337 0.2721 27 6 1.9317 -3.7275 0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5998 -1.7587 0.6144 30 1 -0.5266 -2.4850 -1.0192 31 1 -1.3592 -4.3327 0.2770 32 1 -0.3535 -3.8979 1.6996 33 1 0.2538 -6.5831 1.0345 34 1 1.4052 -5.5580 1.9244 35 1 2.6339 -6.4015 -0.4749 36 1 3.5802 -8.9230 -0.5759 37 1 3.3325 -10.3673 1.4351 38 1 4.5153 -9.3541 2.2977 39 1 5.6673 -11.3155 1.3913 40 1 5.0159 -10.9869 -0.2336 41 1 8.6088 -8.3226 0.0422 42 1 9.6503 -9.3640 0.8506 43 1 7.1364 -7.8001 -0.3685 44 1 5.9739 -8.6941 -1.3816 45 1 5.3824 -7.2787 1.2583 46 1 4.8306 -6.7822 -0.3599 47 1 2.5579 -3.8510 0.8842 48 1 2.5303 -3.8660 -0.8999 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028977083.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:58 Heat of formation + Delta-G solvation = -73.248228 kcal Electronic energy + Delta-G solvation = -27831.267463 eV Core-core repulsion = 23920.270772 eV Total energy + Delta-G solvation = -3910.996692 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.60737 -40.72973 -39.32025 -38.05437 -36.05080 -35.03691 -34.35614 -33.46646 -31.90495 -31.53290 -29.87838 -27.65542 -26.78586 -25.04735 -24.23603 -22.98271 -22.10927 -21.32562 -21.00801 -20.41479 -19.41939 -18.87268 -18.04807 -17.86581 -17.21249 -16.74645 -16.55390 -16.48570 -16.11135 -15.74933 -15.57219 -15.31310 -15.00468 -14.73459 -14.49243 -14.25161 -14.15033 -13.83568 -13.52213 -13.37772 -13.33156 -13.08055 -12.87892 -12.80959 -12.62908 -12.27570 -12.05059 -11.89229 -11.81648 -11.80104 -11.65125 -11.54687 -11.35840 -11.29668 -10.76519 -10.71232 -10.69318 -10.04997 -9.59249 -8.86073 -7.75990 -5.19893 1.47559 1.50373 1.56715 1.65738 1.83562 2.11402 2.25074 2.50972 3.25150 3.33843 3.58229 3.66130 3.72688 3.78147 3.87896 4.01618 4.06431 4.09224 4.30936 4.33500 4.43450 4.48110 4.60014 4.66378 4.71843 4.74222 4.81329 4.84145 4.87001 4.94435 4.99679 5.08978 5.13518 5.14858 5.30703 5.39177 5.47139 5.50915 5.51821 5.67639 5.84811 5.86654 6.02469 6.33627 6.60747 6.91808 7.12631 7.29595 7.61882 7.81389 8.44652 9.25799 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016538 B = 0.002469 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.702954 B =11338.394477 C =12728.901808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.238 4.238 8 H 0.082 0.918 9 N -0.629 5.629 10 C 0.151 3.849 11 C -0.124 4.124 12 C -0.093 4.093 13 H 0.099 0.901 14 C 0.143 3.857 15 N -0.714 5.714 16 C 0.512 3.488 17 O -0.590 6.590 18 C -0.096 4.096 19 C -0.108 4.108 20 C 0.132 3.868 21 N -0.628 5.628 22 C 0.700 3.300 23 N -0.851 5.851 24 O -0.648 6.648 25 C 0.112 3.888 26 C -0.126 4.126 27 C 0.139 3.861 28 H 0.246 0.754 29 H 0.068 0.932 30 H -0.008 1.008 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.415 0.585 36 H 0.135 0.865 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.411 0.589 42 H 0.419 0.581 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.052 0.948 46 H 0.106 0.894 47 H 0.019 0.981 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.976 -19.002 -6.298 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.367 4.367 8 H 0.100 0.900 9 N -0.355 5.355 10 C 0.026 3.974 11 C -0.164 4.164 12 C -0.112 4.112 13 H 0.117 0.883 14 C 0.019 3.981 15 N -0.365 5.365 16 C 0.300 3.700 17 O -0.470 6.470 18 C -0.117 4.117 19 C -0.147 4.147 20 C 0.009 3.991 21 N -0.365 5.365 22 C 0.399 3.601 23 N -0.422 5.422 24 O -0.530 6.530 25 C -0.010 4.010 26 C -0.165 4.165 27 C 0.014 3.986 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.010 0.990 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.252 0.748 36 H 0.153 0.847 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.245 0.755 42 H 0.251 0.749 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.071 0.929 46 H 0.124 0.876 47 H 0.037 0.963 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.543 -19.653 -5.124 23.361 hybrid contribution 0.515 1.714 -0.044 1.790 sum 12.058 -17.939 -5.167 22.224 Atomic orbital electron populations 1.70054 1.06237 1.25015 1.58704 1.25633 0.96611 1.01021 1.02902 0.85146 0.77120 0.78832 0.78208 1.20141 1.22207 1.20493 1.19424 0.91047 0.83842 1.42373 0.90021 1.44818 1.02755 1.01107 1.86814 1.21722 0.84229 0.94787 0.96632 1.22848 0.98007 0.95671 0.99828 1.22284 0.95629 0.93296 0.99971 0.88270 1.21149 0.89411 0.91748 0.95786 1.45958 1.35464 1.28191 1.26916 1.21214 0.84278 0.80452 0.84049 1.90698 1.61843 1.69441 1.25005 1.21333 0.92680 0.95658 1.02036 1.21652 0.98552 0.96566 0.97935 1.21497 0.84251 0.91678 1.01695 1.47365 1.07018 1.25996 1.56151 1.16149 0.81868 0.82343 0.79716 1.43002 1.08884 1.29415 1.60881 1.90922 1.84905 1.34203 1.42994 1.21910 0.98967 0.84586 0.95499 1.21959 0.93759 0.98368 1.02376 1.21491 0.94686 0.84432 0.97953 0.94421 0.91375 0.99041 0.89366 0.92305 0.91007 0.93528 0.74803 0.84690 0.90121 0.93860 0.90771 0.88573 0.75519 0.74853 0.87940 0.87689 0.92934 0.87566 0.96287 0.94714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.97 10.09 21.65 0.22 -55.75 16 2 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 3 Si 0.98 44.69 29.55 68.60 2.03 46.71 16 4 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.24 -12.95 10.27 84.03 0.86 -12.08 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.63 -31.02 3.39 -691.98 -2.35 -33.37 16 10 C 0.15 7.20 5.89 86.86 0.51 7.71 16 11 C -0.12 -4.31 6.53 31.99 0.21 -4.10 16 12 C -0.09 -2.67 3.02 -9.61 -0.03 -2.70 16 13 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 14 C 0.14 3.68 4.99 86.38 0.43 4.11 16 15 N -0.71 -14.23 5.29 -463.05 -2.45 -16.68 16 16 C 0.51 11.36 7.16 87.66 0.63 11.99 16 17 O -0.59 -18.98 15.98 -3.05 -0.05 -19.03 16 18 C -0.10 -1.30 2.49 -11.51 -0.03 -1.32 16 19 C -0.11 -1.87 4.65 30.67 0.14 -1.73 16 20 C 0.13 1.98 6.44 86.36 0.56 2.54 16 21 N -0.63 -8.86 2.97 -836.94 -2.49 -11.35 16 22 C 0.70 13.47 8.57 179.05 1.53 15.00 16 23 N -0.85 -8.70 8.78 -184.75 -1.62 -10.32 16 24 O -0.65 -19.20 16.60 -3.98 -0.07 -19.27 16 25 C 0.11 0.73 6.39 86.36 0.55 1.28 16 26 C -0.13 -1.29 5.27 30.67 0.16 -1.13 16 27 C 0.14 5.09 6.52 86.73 0.57 5.66 16 28 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.07 3.78 5.87 -2.39 -0.01 3.77 16 30 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 31 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.06 2.09 8.05 -2.39 -0.02 2.07 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.05 1.43 8.06 -2.38 -0.02 1.41 16 35 H 0.41 5.89 7.72 -92.71 -0.72 5.18 16 36 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.45 8.07 -2.38 -0.02 1.43 16 38 H 0.04 1.02 8.13 -2.39 -0.02 1.00 16 39 H 0.07 1.50 7.00 -2.39 -0.02 1.48 16 40 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.41 1.58 6.32 -92.71 -0.59 0.99 16 42 H 0.42 3.62 8.93 -92.71 -0.83 2.79 16 43 H 0.10 0.25 5.65 -2.39 -0.01 0.24 16 44 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.11 0.70 7.53 -2.39 -0.02 0.68 16 47 H 0.02 0.72 7.77 -2.39 -0.02 0.70 16 48 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -82.15 376.16 -1.35 -83.50 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -1.14 Total: 13.73 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: 6.56 Total: 21.83 kcal Atomic # 7 Polarization: -118.79 SS G_CDS: -8.69 Total: -127.48 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -0.11 Total: -38.30 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -82.15 -1.35 -83.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028977083.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.255 kcal (2) G-P(sol) polarization free energy of solvation -82.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds