Wall clock time and date at job start Fri Apr 10 2020 18:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99905 * 2 1 4 4 H 1.09000 * 109.47210 * 1.45511 * 3 2 1 5 5 C 1.50700 * 109.46793 * 121.45939 * 3 2 1 6 6 O 1.21277 * 120.00195 * 22.76608 * 5 3 2 7 7 N 1.34783 * 119.99461 * 202.77011 * 5 3 2 8 8 C 1.47163 * 120.70535 * 178.58450 * 7 5 3 9 9 C 1.53889 * 108.03126 * 132.73473 * 8 7 5 10 10 H 1.08998 * 112.09555 * 181.90321 * 9 8 7 11 11 C 1.54540 * 107.82975 * 306.50274 * 9 8 7 12 12 C 1.54832 * 104.74679 * 88.94063 * 11 9 8 13 13 C 1.54550 * 104.74040 * 0.02562 * 12 11 9 14 14 H 1.08996 * 112.68047 * 146.81268 * 13 12 11 15 15 C 1.47158 * 120.71023 * 358.56244 * 7 5 3 16 16 N 1.48305 * 104.35824 * 24.82056 * 13 12 11 17 17 C 1.36937 * 128.07246 * 139.08279 * 16 13 12 18 18 H 1.07998 * 120.00318 * 344.50738 * 17 16 13 19 19 C 1.38812 * 119.99469 * 164.50800 * 17 16 13 20 20 N 1.31615 * 120.00481 * 350.94178 * 19 17 16 21 21 Si 1.86805 * 119.99787 * 170.94164 * 19 17 16 22 22 H 1.48496 * 109.47472 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.47051 * 300.00049 * 21 19 17 24 24 H 1.48506 * 109.47198 * 59.99961 * 21 19 17 25 25 C 1.52997 * 109.46905 * 241.45390 * 3 2 1 26 26 H 1.08996 * 110.43937 * 175.58945 * 25 3 2 27 27 C 1.54813 * 110.48854 * 52.90243 * 25 3 2 28 28 C 1.55004 * 102.09125 * 220.44283 * 27 25 3 29 29 O 1.44383 * 103.49076 * 37.02361 * 28 27 25 30 30 C 1.43745 * 106.97265 * 319.93751 * 29 28 27 31 31 H 1.09000 * 109.46777 * 308.49031 * 1 2 3 32 32 H 1.09004 * 109.47384 * 68.48576 * 1 2 3 33 33 H 1.08994 * 109.47453 * 188.49071 * 1 2 3 34 34 H 1.09001 * 109.74852 * 13.10083 * 8 7 5 35 35 H 1.08996 * 109.74955 * 252.37319 * 8 7 5 36 36 H 1.09000 * 110.36681 * 207.90805 * 11 9 8 37 37 H 1.09001 * 110.36607 * 330.22382 * 11 9 8 38 38 H 1.09002 * 110.30735 * 241.24510 * 12 11 9 39 39 H 1.08996 * 110.60744 * 118.91004 * 12 11 9 40 40 H 1.09000 * 109.75339 * 346.89789 * 15 7 5 41 41 H 1.08995 * 109.74941 * 107.58499 * 15 7 5 42 42 H 0.97008 * 120.00387 * 180.02562 * 20 19 17 43 43 H 1.09005 * 110.90830 * 338.63597 * 27 25 3 44 44 H 1.09000 * 110.91117 * 102.24580 * 27 25 3 45 45 H 1.08999 * 110.61629 * 278.51883 * 28 27 25 46 46 H 1.09003 * 110.61757 * 155.52391 * 28 27 25 47 47 H 1.08991 * 109.87839 * 267.08848 * 30 29 28 48 48 H 1.08998 * 109.87266 * 145.93879 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2195 2.0553 0.0261 5 6 2.8920 1.4627 1.2120 6 8 3.3460 0.4823 1.7629 7 7 3.1758 2.6930 1.6837 8 6 4.0096 2.8636 2.8842 9 6 5.0688 3.9377 2.5799 10 1 5.7472 4.0938 3.4187 11 6 5.8057 3.5225 1.2866 12 6 4.9757 4.1515 0.1408 13 6 3.8174 4.8868 0.8522 14 1 3.5086 5.7911 0.3279 15 6 2.6590 3.8943 1.0089 16 7 4.3436 5.1771 2.2081 17 6 4.1904 6.3200 2.9465 18 1 3.8534 7.2292 2.4709 19 6 4.4682 6.3100 4.3065 20 7 4.7053 5.1707 4.9215 21 14 4.5058 7.9136 5.2640 22 1 4.8225 7.6330 6.6874 23 1 5.5447 8.8073 4.6921 24 1 3.1794 8.5752 5.1737 25 6 2.8474 1.4910 -1.2671 26 1 3.2349 2.5083 -1.3218 27 6 2.0075 1.1599 -2.5248 28 6 3.0282 0.3938 -3.4044 29 8 3.7879 -0.3749 -2.4470 30 6 4.0021 0.4712 -1.3049 31 1 -0.3633 0.6396 0.8044 32 1 -0.3634 0.3769 -0.9561 33 1 -0.3634 -1.0163 0.1517 34 1 4.5002 1.9214 3.1288 35 1 3.3893 3.1845 3.7210 36 1 6.8212 3.9187 1.2847 37 1 5.8212 2.4369 1.1906 38 1 4.5855 3.3732 -0.5150 39 1 5.5804 4.8578 -0.4279 40 1 2.2669 3.6259 0.0280 41 1 1.8692 4.3438 1.6108 42 1 4.8991 5.1637 5.8720 43 1 1.1594 0.5242 -2.2699 44 1 1.6736 2.0713 -3.0206 45 1 3.6751 1.0908 -3.9371 46 1 2.5137 -0.2651 -4.1040 47 1 4.9541 0.9927 -1.4033 48 1 3.9977 -0.1276 -0.3941 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029409526.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:10 Heat of formation + Delta-G solvation = -76.447357 kcal Electronic energy + Delta-G solvation = -30698.592320 eV Core-core repulsion = 26755.164152 eV Total energy + Delta-G solvation = -3943.428167 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.72349 -39.28459 -38.02733 -36.96390 -33.92562 -32.76791 -32.40128 -30.78422 -29.89444 -29.25811 -27.37984 -26.53123 -25.43987 -23.89659 -23.59840 -22.72673 -20.93013 -19.83538 -19.74790 -18.71315 -17.37206 -16.98342 -16.62907 -16.22322 -15.86019 -15.27099 -15.19477 -14.94523 -14.78494 -14.65766 -13.85407 -13.80076 -13.59181 -13.20093 -13.03307 -12.88790 -12.75101 -12.47727 -11.94964 -11.90170 -11.74620 -11.69146 -11.54104 -11.39384 -11.13408 -11.02982 -10.92733 -10.88546 -10.70587 -10.39869 -10.17693 -10.08054 -9.90535 -9.69936 -9.61141 -9.58071 -9.02018 -8.77989 -8.09935 -6.90524 -5.89214 -3.25752 2.95902 3.19063 3.32159 3.37943 3.38978 3.87900 3.99831 4.30809 4.37040 4.53964 4.78614 4.86177 4.95602 5.03812 5.09807 5.20939 5.24001 5.27206 5.31177 5.41308 5.52285 5.55232 5.57682 5.60773 5.64838 5.67118 5.73651 5.78453 5.88344 5.92823 6.11212 6.17299 6.25922 6.33777 6.46712 6.57220 6.63956 6.74441 6.79970 6.87637 6.91244 7.04447 7.24505 7.45171 7.65100 8.00491 8.08926 8.64550 8.99685 9.62084 10.38062 11.23250 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.021785 B = 0.003977 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.954974 B = 7038.159244 C = 7368.997653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.350 6.350 3 C 0.081 3.919 4 H 0.085 0.915 5 C 0.496 3.504 6 O -0.535 6.535 7 N -0.589 5.589 8 C 0.111 3.889 9 C 0.167 3.833 10 H 0.120 0.880 11 C -0.136 4.136 12 C -0.126 4.126 13 C 0.134 3.866 14 H 0.079 0.921 15 C 0.089 3.911 16 N -0.582 5.582 17 C -0.231 4.231 18 H 0.076 0.924 19 C 0.000 4.000 20 N -0.912 5.912 21 Si 0.913 3.087 22 H -0.290 1.290 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.131 4.131 26 H 0.102 0.898 27 C -0.149 4.149 28 C 0.048 3.952 29 O -0.373 6.373 30 C 0.053 3.947 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.256 0.744 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.089 0.911 47 H 0.057 0.943 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.562 -5.219 -14.358 16.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.267 6.267 3 C 0.020 3.980 4 H 0.103 0.897 5 C 0.281 3.719 6 O -0.413 6.413 7 N -0.322 5.322 8 C -0.012 4.012 9 C 0.060 3.940 10 H 0.138 0.862 11 C -0.175 4.175 12 C -0.165 4.165 13 C 0.025 3.975 14 H 0.097 0.903 15 C -0.036 4.036 16 N -0.303 5.303 17 C -0.358 4.358 18 H 0.094 0.906 19 C -0.198 4.198 20 N -0.558 5.558 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.150 4.150 26 H 0.120 0.880 27 C -0.186 4.186 28 C -0.029 4.029 29 O -0.292 6.292 30 C -0.023 4.023 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.076 0.924 46 H 0.108 0.892 47 H 0.075 0.925 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.110 -5.998 -13.787 16.229 hybrid contribution -0.489 1.407 0.610 1.610 sum -6.599 -4.590 -13.177 15.435 Atomic orbital electron populations 1.22955 0.81174 1.03087 0.99804 1.88059 1.19167 1.25027 1.94492 1.21965 0.96049 0.86798 0.93230 0.89744 1.20573 0.82425 0.83530 0.85335 1.90661 1.52959 1.37814 1.59829 1.48258 1.50456 1.04494 1.29020 1.22474 0.93900 0.99483 0.85298 1.21920 0.92271 0.84523 0.95280 0.86216 1.22714 0.98728 0.98792 0.97259 1.22654 0.97903 0.98534 0.97376 1.21824 0.91625 0.94617 0.89419 0.90345 1.22546 0.98505 0.86973 0.95597 1.45165 1.58118 1.13621 1.13390 1.18937 1.40895 0.86619 0.89399 0.90620 1.24844 1.01906 0.97010 0.96040 1.69816 1.52775 1.23513 1.09648 0.86207 0.77879 0.82633 0.79020 1.21569 1.21131 1.21122 1.22966 0.96669 1.01441 0.93916 0.87996 1.23197 0.99362 1.01130 0.94935 1.23483 0.92350 0.94697 0.92346 1.88881 1.74832 1.37685 1.27787 1.23251 0.95877 0.92474 0.90727 0.93831 0.93996 0.89342 0.91194 0.90236 0.92717 0.92800 0.92990 0.92522 0.91925 0.91539 0.93336 0.89770 0.90173 0.92386 0.89243 0.92502 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.38 101.05 1.05 1.33 16 2 O -0.35 -5.17 8.75 -54.03 -0.47 -5.64 16 3 C 0.08 1.14 1.55 -27.88 -0.04 1.10 16 4 H 0.08 1.01 6.26 -51.93 -0.33 0.69 16 5 C 0.50 8.94 6.18 -10.98 -0.07 8.87 16 6 O -0.54 -11.63 15.01 -13.23 -0.20 -11.83 16 7 N -0.59 -10.80 2.25 -171.87 -0.39 -11.18 16 8 C 0.11 2.39 5.82 -3.22 -0.02 2.38 16 9 C 0.17 3.68 3.14 -65.65 -0.21 3.48 16 10 H 0.12 3.02 6.33 -51.93 -0.33 2.70 16 11 C -0.14 -2.54 6.21 -24.96 -0.16 -2.69 16 12 C -0.13 -2.05 6.21 -24.95 -0.15 -2.20 16 13 C 0.13 2.40 4.28 -65.94 -0.28 2.12 16 14 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 15 C 0.09 1.45 5.45 -3.50 -0.02 1.43 16 16 N -0.58 -13.17 2.82 -152.90 -0.43 -13.60 16 17 C -0.23 -5.81 10.37 -15.06 -0.16 -5.97 16 18 H 0.08 1.85 7.84 -52.49 -0.41 1.44 16 19 C 0.00 -0.01 5.42 -17.43 -0.09 -0.11 16 20 N -0.91 -24.54 10.40 55.49 0.58 -23.96 16 21 Si 0.91 20.74 29.56 -169.99 -5.03 15.71 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C -0.13 -1.61 2.72 -89.09 -0.24 -1.85 16 26 H 0.10 1.17 4.75 -51.93 -0.25 0.92 16 27 C -0.15 -1.45 6.58 -24.72 -0.16 -1.61 16 28 C 0.05 0.50 7.72 38.22 0.29 0.79 16 29 O -0.37 -5.44 11.52 -35.23 -0.41 -5.85 16 30 C 0.05 0.78 6.74 37.73 0.25 1.03 16 31 H 0.04 0.45 8.05 -51.93 -0.42 0.03 16 32 H 0.04 0.35 7.04 -51.93 -0.37 -0.02 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.55 7.10 -51.93 -0.37 1.18 16 35 H 0.08 1.95 7.83 -51.93 -0.41 1.55 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.05 1.00 7.84 -51.93 -0.41 0.59 16 38 H 0.05 0.75 5.52 -51.93 -0.29 0.46 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.79 4.78 -51.93 -0.25 0.54 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 43 H 0.08 0.84 5.64 -51.93 -0.29 0.54 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.10 1.81 6.07 -51.93 -0.32 1.50 16 LS Contribution 357.04 15.07 5.38 5.38 Total: -1.00 -30.28 357.04 -8.33 -38.61 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.36 Total: 4.27 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -0.01 Total: 8.09 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -0.24 Total: -48.75 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -1.08 Total: -23.32 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.28 -8.33 -38.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029409526.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.839 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds