Wall clock time and date at job start Fri Apr 10 2020 18:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99905 * 2 1 4 4 H 1.09000 * 109.47210 * 1.45511 * 3 2 1 5 5 C 1.50700 * 109.46793 * 121.45939 * 3 2 1 6 6 O 1.21277 * 120.00195 * 22.76608 * 5 3 2 7 7 N 1.34783 * 119.99461 * 202.77011 * 5 3 2 8 8 C 1.47163 * 120.70535 * 178.58450 * 7 5 3 9 9 C 1.53889 * 108.03126 * 132.73473 * 8 7 5 10 10 H 1.08998 * 112.09555 * 181.90321 * 9 8 7 11 11 C 1.54540 * 107.82975 * 306.50274 * 9 8 7 12 12 C 1.54832 * 104.74679 * 88.94063 * 11 9 8 13 13 C 1.54550 * 104.74040 * 0.02562 * 12 11 9 14 14 H 1.08996 * 112.68047 * 146.81268 * 13 12 11 15 15 C 1.47158 * 120.71023 * 358.56244 * 7 5 3 16 16 N 1.48305 * 104.35824 * 24.82056 * 13 12 11 17 17 C 1.36937 * 128.07246 * 139.08279 * 16 13 12 18 18 H 1.07998 * 120.00318 * 344.50738 * 17 16 13 19 19 C 1.38812 * 119.99469 * 164.50800 * 17 16 13 20 20 N 1.31615 * 120.00481 * 350.94178 * 19 17 16 21 21 Si 1.86805 * 119.99787 * 170.94164 * 19 17 16 22 22 H 1.48496 * 109.47472 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.47051 * 300.00049 * 21 19 17 24 24 H 1.48506 * 109.47198 * 59.99961 * 21 19 17 25 25 C 1.52997 * 109.46905 * 241.45390 * 3 2 1 26 26 H 1.08996 * 110.43937 * 175.58945 * 25 3 2 27 27 C 1.54813 * 110.48854 * 52.90243 * 25 3 2 28 28 C 1.55004 * 102.09125 * 220.44283 * 27 25 3 29 29 O 1.44383 * 103.49076 * 37.02361 * 28 27 25 30 30 C 1.43745 * 106.97265 * 319.93751 * 29 28 27 31 31 H 1.09000 * 109.46777 * 308.49031 * 1 2 3 32 32 H 1.09004 * 109.47384 * 68.48576 * 1 2 3 33 33 H 1.08994 * 109.47453 * 188.49071 * 1 2 3 34 34 H 1.09001 * 109.74852 * 13.10083 * 8 7 5 35 35 H 1.08996 * 109.74955 * 252.37319 * 8 7 5 36 36 H 1.09000 * 110.36681 * 207.90805 * 11 9 8 37 37 H 1.09001 * 110.36607 * 330.22382 * 11 9 8 38 38 H 1.09002 * 110.30735 * 241.24510 * 12 11 9 39 39 H 1.08996 * 110.60744 * 118.91004 * 12 11 9 40 40 H 1.09000 * 109.75339 * 346.89789 * 15 7 5 41 41 H 1.08995 * 109.74941 * 107.58499 * 15 7 5 42 42 H 0.97008 * 120.00387 * 180.02562 * 20 19 17 43 43 H 1.09005 * 110.90830 * 338.63597 * 27 25 3 44 44 H 1.09000 * 110.91117 * 102.24580 * 27 25 3 45 45 H 1.08999 * 110.61629 * 278.51883 * 28 27 25 46 46 H 1.09003 * 110.61757 * 155.52391 * 28 27 25 47 47 H 1.08991 * 109.87839 * 267.08848 * 30 29 28 48 48 H 1.08998 * 109.87266 * 145.93879 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2195 2.0553 0.0261 5 6 2.8920 1.4627 1.2120 6 8 3.3460 0.4823 1.7629 7 7 3.1758 2.6930 1.6837 8 6 4.0096 2.8636 2.8842 9 6 5.0688 3.9377 2.5799 10 1 5.7472 4.0938 3.4187 11 6 5.8057 3.5225 1.2866 12 6 4.9757 4.1515 0.1408 13 6 3.8174 4.8868 0.8522 14 1 3.5086 5.7911 0.3279 15 6 2.6590 3.8943 1.0089 16 7 4.3436 5.1771 2.2081 17 6 4.1904 6.3200 2.9465 18 1 3.8534 7.2292 2.4709 19 6 4.4682 6.3100 4.3065 20 7 4.7053 5.1707 4.9215 21 14 4.5058 7.9136 5.2640 22 1 4.8225 7.6330 6.6874 23 1 5.5447 8.8073 4.6921 24 1 3.1794 8.5752 5.1737 25 6 2.8474 1.4910 -1.2671 26 1 3.2349 2.5083 -1.3218 27 6 2.0075 1.1599 -2.5248 28 6 3.0282 0.3938 -3.4044 29 8 3.7879 -0.3749 -2.4470 30 6 4.0021 0.4712 -1.3049 31 1 -0.3633 0.6396 0.8044 32 1 -0.3634 0.3769 -0.9561 33 1 -0.3634 -1.0163 0.1517 34 1 4.5002 1.9214 3.1288 35 1 3.3893 3.1845 3.7210 36 1 6.8212 3.9187 1.2847 37 1 5.8212 2.4369 1.1906 38 1 4.5855 3.3732 -0.5150 39 1 5.5804 4.8578 -0.4279 40 1 2.2669 3.6259 0.0280 41 1 1.8692 4.3438 1.6108 42 1 4.8991 5.1637 5.8720 43 1 1.1594 0.5242 -2.2699 44 1 1.6736 2.0713 -3.0206 45 1 3.6751 1.0908 -3.9371 46 1 2.5137 -0.2651 -4.1040 47 1 4.9541 0.9927 -1.4033 48 1 3.9977 -0.1276 -0.3941 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029409526.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:09 Heat of formation + Delta-G solvation = -95.648719 kcal Electronic energy + Delta-G solvation = -30699.424953 eV Core-core repulsion = 26755.164152 eV Total energy + Delta-G solvation = -3944.260801 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.03148 -40.51222 -39.31148 -38.17784 -35.52855 -34.19432 -33.79277 -32.27686 -31.11574 -30.69549 -28.50654 -27.77006 -26.71606 -25.51299 -25.13986 -23.66502 -21.99762 -21.31465 -21.16293 -20.30194 -18.71104 -18.21296 -17.77157 -17.63192 -17.02287 -16.59172 -16.51488 -16.29521 -16.13132 -15.72831 -15.52060 -15.02030 -14.92807 -14.67197 -14.48819 -14.17095 -13.82821 -13.56152 -13.46326 -13.30531 -13.26735 -12.89649 -12.70868 -12.68322 -12.63570 -12.47266 -12.23016 -12.03245 -11.97965 -11.80643 -11.73433 -11.51992 -11.42500 -11.17999 -11.06411 -10.74885 -10.57300 -10.24700 -9.73122 -8.70470 -7.83627 -5.19823 1.50089 1.51635 1.57328 1.57849 1.89158 2.51761 2.81810 3.08926 3.29611 3.36317 3.43655 3.57771 3.74524 3.90154 4.03635 4.07068 4.14157 4.22602 4.28412 4.33034 4.33578 4.37440 4.45343 4.52124 4.56659 4.60252 4.73824 4.80238 4.82693 4.84972 4.88239 4.91057 4.98380 5.02933 5.07853 5.11766 5.14120 5.24332 5.29259 5.40602 5.54129 5.58695 5.82514 5.98499 6.05866 6.24076 6.58467 7.06451 7.21023 7.74761 8.53014 9.27506 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.021785 B = 0.003977 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.954974 B = 7038.159244 C = 7368.997653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.379 6.379 3 C 0.090 3.910 4 H 0.114 0.886 5 C 0.492 3.508 6 O -0.580 6.580 7 N -0.589 5.589 8 C 0.128 3.872 9 C 0.166 3.834 10 H 0.078 0.922 11 C -0.129 4.129 12 C -0.113 4.113 13 C 0.129 3.871 14 H 0.102 0.898 15 C 0.092 3.908 16 N -0.602 5.602 17 C -0.230 4.230 18 H 0.085 0.915 19 C -0.056 4.056 20 N -0.940 5.940 21 Si 0.970 3.030 22 H -0.303 1.303 23 H -0.281 1.281 24 H -0.278 1.278 25 C -0.126 4.126 26 H 0.119 0.881 27 C -0.138 4.138 28 C 0.039 3.961 29 O -0.401 6.401 30 C 0.054 3.946 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.040 0.960 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.055 0.945 42 H 0.245 0.755 43 H 0.083 0.917 44 H 0.117 0.883 45 H 0.075 0.925 46 H 0.106 0.894 47 H 0.058 0.942 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.429 -3.908 -18.308 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.296 6.296 3 C 0.029 3.971 4 H 0.132 0.868 5 C 0.280 3.720 6 O -0.460 6.460 7 N -0.322 5.322 8 C 0.003 3.997 9 C 0.058 3.942 10 H 0.096 0.904 11 C -0.168 4.168 12 C -0.152 4.152 13 C 0.021 3.979 14 H 0.119 0.881 15 C -0.032 4.032 16 N -0.324 5.324 17 C -0.359 4.359 18 H 0.103 0.897 19 C -0.250 4.250 20 N -0.587 5.587 21 Si 0.800 3.200 22 H -0.230 1.230 23 H -0.207 1.207 24 H -0.204 1.204 25 C -0.145 4.145 26 H 0.137 0.863 27 C -0.176 4.176 28 C -0.037 4.037 29 O -0.321 6.321 30 C -0.023 4.023 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.131 0.869 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.102 0.898 44 H 0.135 0.865 45 H 0.093 0.907 46 H 0.124 0.876 47 H 0.076 0.924 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.011 -4.670 -17.800 20.071 hybrid contribution 0.074 0.904 1.807 2.022 sum -7.937 -3.766 -15.993 18.247 Atomic orbital electron populations 1.23206 0.79068 1.03967 1.01541 1.88047 1.21563 1.25532 1.94496 1.21969 0.96085 0.87606 0.91459 0.86794 1.21495 0.82030 0.82376 0.86100 1.90640 1.54630 1.39280 1.61487 1.48253 1.50049 1.05807 1.28048 1.21937 0.93622 0.98245 0.85887 1.21696 0.92026 0.84866 0.95574 0.90445 1.22589 0.98816 0.98739 0.96646 1.22600 0.96961 0.99208 0.96425 1.22136 0.92528 0.96128 0.87069 0.88062 1.22631 0.97466 0.85587 0.97488 1.45336 1.59016 1.12955 1.15051 1.19299 1.39074 0.87860 0.89660 0.89703 1.25536 1.02973 0.99284 0.97235 1.70030 1.54633 1.25118 1.08960 0.85286 0.77980 0.79742 0.77031 1.22975 1.20720 1.20360 1.23005 0.96012 1.01342 0.94173 0.86331 1.23221 0.98506 1.02628 0.93203 1.23798 0.92616 0.95254 0.92003 1.88854 1.75722 1.39037 1.28478 1.23101 0.97242 0.92445 0.89528 0.93748 0.90909 0.88674 0.93052 0.94195 0.92765 0.93140 0.90385 0.90826 0.86911 0.92691 0.94543 0.89835 0.86496 0.90699 0.87598 0.92364 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.38 113.37 1.18 1.50 16 2 O -0.38 -10.45 8.75 -131.01 -1.15 -11.59 16 3 C 0.09 2.27 1.55 29.85 0.05 2.32 16 4 H 0.11 2.18 6.26 -2.39 -0.01 2.16 16 5 C 0.49 17.47 6.18 87.66 0.54 18.02 16 6 O -0.58 -26.10 15.01 14.95 0.22 -25.87 16 7 N -0.59 -21.29 2.25 -816.06 -1.84 -23.13 16 8 C 0.13 5.79 5.82 86.55 0.50 6.29 16 9 C 0.17 7.56 3.14 45.46 0.14 7.71 16 10 H 0.08 4.18 6.33 -2.39 -0.02 4.17 16 11 C -0.13 -4.77 6.21 31.74 0.20 -4.57 16 12 C -0.11 -3.32 6.21 31.75 0.20 -3.12 16 13 C 0.13 4.21 4.28 45.29 0.19 4.41 16 14 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 15 C 0.09 2.72 5.45 86.37 0.47 3.19 16 16 N -0.60 -27.06 2.82 -637.65 -1.80 -28.86 16 17 C -0.23 -11.57 10.37 84.03 0.87 -10.70 16 18 H 0.09 4.02 7.84 -2.91 -0.02 4.00 16 19 C -0.06 -2.97 5.42 84.86 0.46 -2.51 16 20 N -0.94 -53.22 10.40 21.65 0.23 -52.99 16 21 Si 0.97 43.42 29.56 68.60 2.03 45.45 16 22 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 25 C -0.13 -2.61 2.72 -9.80 -0.03 -2.64 16 26 H 0.12 2.03 4.75 -2.39 -0.01 2.01 16 27 C -0.14 -1.96 6.58 31.90 0.21 -1.75 16 28 C 0.04 0.65 7.72 72.67 0.56 1.21 16 29 O -0.40 -10.98 11.52 -148.98 -1.72 -12.70 16 30 C 0.05 1.49 6.74 72.36 0.49 1.98 16 31 H 0.04 0.79 8.05 -2.39 -0.02 0.77 16 32 H 0.07 0.88 7.04 -2.38 -0.02 0.86 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.05 2.46 7.10 -2.39 -0.02 2.44 16 35 H 0.04 2.10 7.83 -2.39 -0.02 2.08 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.05 1.88 7.84 -2.39 -0.02 1.87 16 38 H 0.08 1.89 5.52 -2.39 -0.01 1.88 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.11 2.22 4.78 -2.39 -0.01 2.21 16 41 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.25 13.87 8.31 -92.70 -0.77 13.10 16 43 H 0.08 1.24 5.64 -2.38 -0.01 1.22 16 44 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 48 H 0.06 2.25 6.07 -2.39 -0.01 2.23 16 Total: -1.00 -71.63 357.04 2.98 -68.64 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.97 Total: 19.72 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: 6.03 Total: 21.34 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -3.41 Total: -104.98 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -2.64 Total: -50.17 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -71.63 2.98 -68.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029409526.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.004 kcal (2) G-P(sol) polarization free energy of solvation -71.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds