Wall clock time and date at job start Fri Apr 10 2020 18:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99808 * 2 1 4 4 H 1.48503 * 109.46811 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46943 * 299.99750 * 3 2 1 6 6 H 1.48493 * 109.47119 * 60.00006 * 3 2 1 7 7 C 1.38811 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00488 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00256 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.47033 * 34.99618 * 10 9 7 12 12 C 1.52997 * 109.47426 * 154.99718 * 10 9 7 13 13 C 1.53003 * 109.47241 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47087 * 300.00042 * 13 12 10 15 15 H 1.09004 * 109.47434 * 300.00074 * 14 13 12 16 16 N 1.46498 * 109.46963 * 179.97438 * 14 13 12 17 17 C 1.34777 * 119.99828 * 154.72290 * 16 14 13 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 14 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 14 20 20 N 1.46492 * 109.47441 * 180.02562 * 19 17 16 21 21 C 1.46383 * 119.33139 * 89.99902 * 20 19 17 22 22 C 1.53243 * 109.15231 * 209.03849 * 21 20 19 23 23 C 1.53242 * 108.56197 * 304.51974 * 22 21 20 24 24 N 1.46376 * 109.15360 * 55.48355 * 23 22 21 25 25 C 1.34135 * 121.33893 * 330.68084 * 24 23 22 26 26 O 1.21592 * 118.70306 * 180.85414 * 25 24 23 27 27 C 1.52997 * 109.47114 * 59.99880 * 14 13 12 28 28 C 1.52999 * 109.46797 * 274.99695 * 10 9 7 29 29 H 0.97004 * 120.00542 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99694 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46812 * 59.99970 * 12 10 9 32 32 H 1.08997 * 109.47293 * 299.99867 * 12 10 9 33 33 H 1.08997 * 109.46962 * 180.02562 * 13 12 10 34 34 H 1.08995 * 109.46928 * 60.00077 * 13 12 10 35 35 H 0.97001 * 120.00384 * 335.00737 * 16 14 13 36 36 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 37 37 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 38 38 H 1.09000 * 109.52091 * 328.94326 * 21 20 19 39 39 H 1.09001 * 109.52048 * 89.13622 * 21 20 19 40 40 H 1.08992 * 109.62206 * 64.24396 * 22 21 20 41 41 H 1.09001 * 109.61745 * 184.79796 * 22 21 20 42 42 H 1.09005 * 109.51935 * 175.39007 * 23 22 21 43 43 H 1.09000 * 109.52555 * 295.51018 * 23 22 21 44 44 H 0.97005 * 119.32928 * 150.96286 * 24 23 22 45 45 H 1.09009 * 109.47238 * 59.99946 * 27 14 13 46 46 H 1.08997 * 109.47293 * 179.97438 * 27 14 13 47 47 H 1.08995 * 109.47266 * 299.99780 * 28 10 9 48 48 H 1.09000 * 109.47204 * 59.99838 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9688 -3.5505 0.5899 12 6 1.1811 -4.7521 0.6102 13 6 1.9459 -6.0773 0.6096 14 6 2.3092 -6.4558 -0.8276 15 1 1.3982 -6.5617 -1.4168 16 7 3.0420 -7.7243 -0.8281 17 6 3.0283 -8.5100 -1.9231 18 8 2.4135 -8.1644 -2.9098 19 6 3.7770 -9.8179 -1.9215 20 7 3.6078 -10.4790 -3.2178 21 6 4.5650 -10.2078 -4.2915 22 6 3.8620 -10.3670 -5.6438 23 6 3.2409 -11.7664 -5.7090 24 7 2.3556 -11.9530 -4.5584 25 6 2.5819 -11.3250 -3.3950 26 8 1.8246 -11.5270 -2.4654 27 6 3.1863 -5.3604 -1.4373 28 6 2.4219 -4.0355 -1.4365 29 1 -0.4851 0.8400 0.0004 30 1 0.3556 -2.3880 0.0005 31 1 0.2703 -4.8584 0.0208 32 1 0.9219 -4.4823 1.6339 33 1 1.3208 -6.8577 1.0435 34 1 2.8568 -5.9713 1.1987 35 1 3.5337 -8.0007 -0.0390 36 1 4.8361 -9.6300 -1.7454 37 1 3.3857 -10.4595 -1.1320 38 1 4.9423 -9.1898 -4.1946 39 1 5.3942 -10.9123 -4.2268 40 1 3.0796 -9.6144 -5.7404 41 1 4.5872 -10.2504 -6.4492 42 1 2.6673 -11.8677 -6.6304 43 1 4.0310 -12.5170 -5.6875 44 1 1.5920 -12.5460 -4.6376 45 1 4.0973 -5.2544 -0.8481 46 1 3.4455 -5.6302 -2.4610 47 1 1.5112 -4.1418 -2.0259 48 1 3.0468 -3.2552 -1.8709 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034682113.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:30 Heat of formation + Delta-G solvation = -89.101348 kcal Electronic energy + Delta-G solvation = -27940.310265 eV Core-core repulsion = 24028.626130 eV Total energy + Delta-G solvation = -3911.684134 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.86014 -40.75582 -39.21296 -37.47784 -36.41387 -35.77610 -34.63368 -32.55970 -31.98724 -31.70009 -29.84728 -28.24687 -26.41089 -25.50958 -24.06344 -23.63431 -22.54476 -21.52752 -20.92404 -19.94633 -19.15315 -18.61662 -18.32547 -18.13481 -17.29673 -16.85910 -16.59090 -16.16085 -15.85002 -15.59690 -15.38112 -15.27808 -15.08348 -14.92262 -14.69492 -14.65280 -14.26254 -13.98612 -13.52831 -13.29308 -13.16516 -13.09420 -12.86513 -12.67325 -12.43273 -12.34393 -12.29105 -12.23808 -12.09801 -12.03518 -11.66672 -11.47731 -11.23250 -11.21439 -11.08044 -10.84903 -10.15531 -10.00100 -9.59404 -9.00078 -7.93535 -5.22027 1.46536 1.47638 1.55738 1.57525 1.66866 2.06561 2.37329 2.56667 2.90593 3.39397 3.70895 3.77934 3.79450 3.87942 3.90312 4.00560 4.09431 4.27628 4.29735 4.36974 4.39873 4.43452 4.48672 4.53206 4.59407 4.65247 4.66859 4.76374 4.86011 4.86078 5.00098 5.10823 5.14194 5.20879 5.24263 5.27048 5.34110 5.48326 5.53708 5.56122 5.59900 5.63707 6.08349 6.29098 6.62892 6.77204 7.32688 7.34133 7.51839 8.11705 8.34089 9.30554 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.026362 B = 0.002204 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.898234 B =12698.531283 C =13118.748781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.297 1.297 6 H -0.293 1.293 7 C -0.233 4.233 8 H 0.077 0.923 9 N -0.741 5.741 10 C 0.174 3.826 11 H 0.052 0.948 12 C -0.114 4.114 13 C -0.105 4.105 14 C 0.153 3.847 15 H 0.051 0.949 16 N -0.709 5.709 17 C 0.490 3.510 18 O -0.582 6.582 19 C 0.114 3.886 20 N -0.608 5.608 21 C 0.109 3.891 22 C -0.153 4.153 23 C 0.108 3.892 24 N -0.735 5.735 25 C 0.703 3.297 26 O -0.650 6.650 27 C -0.107 4.107 28 C -0.123 4.123 29 H 0.249 0.751 30 H 0.370 0.630 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.419 0.581 36 H 0.155 0.845 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.048 0.952 41 H 0.129 0.871 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.416 0.584 45 H 0.081 0.919 46 H 0.047 0.953 47 H 0.032 0.968 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.491 -28.652 -8.057 33.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.224 1.224 6 H -0.220 1.220 7 C -0.365 4.365 8 H 0.095 0.905 9 N -0.380 5.380 10 C 0.065 3.935 11 H 0.070 0.930 12 C -0.153 4.153 13 C -0.144 4.144 14 C 0.048 3.952 15 H 0.070 0.930 16 N -0.362 5.362 17 C 0.276 3.724 18 O -0.461 6.461 19 C -0.013 4.013 20 N -0.343 5.343 21 C -0.013 4.013 22 C -0.191 4.191 23 C -0.016 4.016 24 N -0.391 5.391 25 C 0.403 3.597 26 O -0.533 6.533 27 C -0.146 4.146 28 C -0.164 4.164 29 H 0.058 0.942 30 H 0.201 0.799 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.256 0.744 36 H 0.172 0.828 37 H 0.134 0.866 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.067 0.933 41 H 0.147 0.853 42 H 0.120 0.880 43 H 0.107 0.893 44 H 0.254 0.746 45 H 0.100 0.900 46 H 0.066 0.934 47 H 0.051 0.949 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 15.025 -28.293 -8.292 33.090 hybrid contribution -0.849 1.225 -0.030 1.491 sum 14.176 -27.067 -8.322 31.668 Atomic orbital electron populations 1.69835 1.06697 1.25842 1.60047 1.25588 0.96385 1.01187 1.04210 0.85082 0.78348 0.79899 0.76527 1.18783 1.22401 1.22048 1.19678 0.91448 0.85202 1.40204 0.90468 1.42713 1.05442 1.01255 1.88567 1.20482 0.94552 0.84853 0.93565 0.93015 1.21648 0.98313 0.94416 1.00944 1.21647 1.01813 0.96344 0.94560 1.20771 0.94222 0.82753 0.97425 0.93048 1.45900 1.52915 1.20498 1.16858 1.21920 0.80998 0.86806 0.82699 1.90694 1.45078 1.74932 1.35370 1.21380 1.03090 0.90007 0.86839 1.46476 1.28722 1.44526 1.14577 1.21879 0.91152 1.03002 0.85269 1.22220 1.01609 0.96926 0.98390 1.21806 0.94384 0.97020 0.88349 1.44976 1.33012 1.50213 1.10919 1.15720 0.81190 0.79360 0.83380 1.90904 1.49723 1.70430 1.42220 1.21710 0.98950 0.93473 1.00460 1.22020 0.98854 0.96162 0.99363 0.94173 0.79869 0.93479 0.91428 0.89954 0.88817 0.74382 0.82797 0.86616 0.89883 0.88352 0.93328 0.85337 0.88025 0.89266 0.74639 0.89998 0.93380 0.94868 0.93853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.10 13.06 21.65 0.28 -60.82 16 2 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 3 Si 0.97 46.86 29.55 68.60 2.03 48.89 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 7 C -0.23 -13.12 9.93 84.03 0.83 -12.29 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.74 -38.26 5.12 -322.96 -1.65 -39.91 16 10 C 0.17 6.84 2.77 44.99 0.12 6.96 16 11 H 0.05 1.99 8.08 -2.39 -0.02 1.98 16 12 C -0.11 -3.71 5.39 30.59 0.16 -3.55 16 13 C -0.11 -2.46 5.39 30.59 0.16 -2.29 16 14 C 0.15 4.03 2.46 44.99 0.11 4.14 16 15 H 0.05 1.74 7.57 -2.39 -0.02 1.72 16 16 N -0.71 -13.97 5.08 -442.53 -2.25 -16.22 16 17 C 0.49 11.76 7.86 87.66 0.69 12.45 16 18 O -0.58 -20.18 16.09 -3.04 -0.05 -20.23 16 19 C 0.11 1.82 5.80 85.64 0.50 2.32 16 20 N -0.61 -11.24 2.30 -845.66 -1.95 -13.19 16 21 C 0.11 1.17 6.49 86.48 0.56 1.73 16 22 C -0.15 -1.48 6.20 30.76 0.19 -1.29 16 23 C 0.11 0.85 7.20 86.48 0.62 1.48 16 24 N -0.73 -12.21 5.58 -479.85 -2.68 -14.89 16 25 C 0.70 17.10 8.18 179.45 1.47 18.57 16 26 O -0.65 -21.68 16.49 -4.01 -0.07 -21.74 16 27 C -0.11 -3.06 5.49 30.58 0.17 -2.89 16 28 C -0.12 -4.62 5.50 30.58 0.17 -4.45 16 29 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.37 20.77 7.80 -92.71 -0.72 20.04 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.42 4.77 8.60 -92.71 -0.80 3.98 16 36 H 0.15 0.94 8.05 -2.39 -0.02 0.92 16 37 H 0.12 1.92 7.29 -2.39 -0.02 1.90 16 38 H 0.08 0.91 8.06 -2.39 -0.02 0.89 16 39 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 43 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.42 6.24 8.88 -92.70 -0.82 5.41 16 45 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 46 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 48 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -86.75 385.10 -1.46 -88.22 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: -1.36 Total: 33.33 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 6.23 Total: 16.56 kcal Atomic # 7 Polarization: -136.78 SS G_CDS: -8.24 Total: -145.02 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -0.11 Total: -41.97 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -86.75 -1.46 -88.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034682113.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.885 kcal (2) G-P(sol) polarization free energy of solvation -86.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds