Wall clock time and date at job start Fri Apr 10 2020 18:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.52081 * 2 1 4 4 O 1.43072 * 109.52708 * 239.80790 * 2 1 3 5 5 C 1.43080 * 113.59397 * 182.14623 * 4 2 1 6 6 C 1.53142 * 109.15227 * 57.95018 * 5 4 2 7 7 O 1.43084 * 109.14744 * 304.68703 * 6 5 4 8 8 C 1.43070 * 113.58967 * 57.95514 * 7 6 5 9 9 H 1.09000 * 109.57292 * 182.11059 * 8 7 6 10 10 C 1.50699 * 109.52685 * 61.95169 * 8 7 6 11 11 O 1.21280 * 119.99596 * 333.25165 * 10 8 7 12 12 N 1.34777 * 120.00566 * 153.25705 * 10 8 7 13 13 C 1.48264 * 127.72984 * 354.50348 * 12 10 8 14 14 C 1.54718 * 104.66579 * 141.19493 * 13 12 10 15 15 C 1.53036 * 104.47492 * 23.66004 * 14 13 12 16 16 C 1.53900 * 111.34672 * 238.31040 * 15 14 13 17 17 C 1.55357 * 101.35609 * 204.81874 * 16 15 14 18 18 N 1.47536 * 104.86820 * 36.02124 * 17 16 15 19 19 C 1.36938 * 125.67121 * 156.04338 * 18 17 16 20 20 H 1.07993 * 120.00356 * 190.15862 * 19 18 17 21 21 C 1.38812 * 119.99736 * 10.14880 * 19 18 17 22 22 N 1.31620 * 119.99969 * 30.46538 * 21 19 18 23 23 Si 1.86800 * 120.00256 * 210.18056 * 21 19 18 24 24 H 1.48494 * 109.47408 * 90.00211 * 23 21 19 25 25 H 1.48503 * 109.47434 * 210.00748 * 23 21 19 26 26 H 1.48501 * 109.47032 * 330.00328 * 23 21 19 27 27 C 1.47347 * 108.66141 * 335.77678 * 18 17 16 28 28 C 1.48446 * 127.73994 * 174.50465 * 12 10 8 29 29 H 1.08999 * 109.47349 * 305.61629 * 1 2 3 30 30 H 1.08997 * 109.46970 * 65.62264 * 1 2 3 31 31 H 1.09008 * 109.46839 * 185.61615 * 1 2 3 32 32 H 1.09004 * 109.52196 * 177.85348 * 5 4 2 33 33 H 1.08995 * 109.52111 * 298.04742 * 5 4 2 34 34 H 1.08991 * 109.52526 * 64.58989 * 6 5 4 35 35 H 1.09000 * 109.52337 * 184.78743 * 6 5 4 36 36 H 1.09000 * 110.39769 * 22.39608 * 13 12 10 37 37 H 1.09001 * 110.39397 * 259.98560 * 13 12 10 38 38 H 1.08997 * 110.42906 * 264.90767 * 14 13 12 39 39 H 1.08999 * 110.53621 * 142.46086 * 14 13 12 40 40 H 1.08996 * 111.02384 * 323.02481 * 16 15 14 41 41 H 1.08996 * 111.02817 * 86.90516 * 16 15 14 42 42 H 1.09001 * 110.46855 * 277.14094 * 17 16 15 43 43 H 1.08999 * 110.31406 * 154.82223 * 17 16 15 44 44 H 0.97001 * 120.00345 * 5.50111 * 22 21 19 45 45 H 1.08999 * 109.96807 * 121.53546 * 27 18 17 46 46 H 1.08995 * 109.97061 * 242.77337 * 27 18 17 47 47 H 1.09002 * 110.46546 * 99.70076 * 28 12 10 48 48 H 1.08996 * 110.46248 * 337.11430 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 8 2.0082 -0.6781 -1.1655 5 6 3.4346 -0.7718 -1.2288 6 6 3.9464 -1.4963 0.0195 7 8 3.4681 -0.8180 1.1851 8 6 2.0419 -0.7245 1.2483 9 1 1.7517 -0.1661 2.1383 10 6 1.4484 -2.1085 1.3063 11 8 2.0491 -3.0464 0.8263 12 7 0.2501 -2.3040 1.8914 13 6 -0.5740 -1.3133 2.6245 14 6 -2.0304 -1.6334 2.2120 15 6 -1.9917 -3.1007 1.7789 16 6 -2.4662 -3.2682 0.3245 17 6 -2.9571 -4.7421 0.3308 18 7 -3.5545 -4.9365 1.6657 19 6 -4.5019 -5.8712 1.9881 20 1 -4.9963 -5.8303 2.9474 21 6 -4.8270 -6.8712 1.0819 22 7 -3.9184 -7.3177 0.2407 23 14 -6.5515 -7.5887 1.0614 24 1 -7.4012 -6.8087 0.1262 25 1 -6.4937 -9.0038 0.6147 26 1 -7.1307 -7.5242 2.4273 27 6 -2.9577 -3.9619 2.5958 28 6 -0.5402 -3.5594 1.9463 29 1 -0.3634 0.5985 0.8354 30 1 -0.3633 0.4242 -0.9360 31 1 -0.3633 -1.0228 0.1006 32 1 3.7238 -1.3307 -2.1188 33 1 3.8638 0.2293 -1.2707 34 1 3.5812 -2.5232 0.0201 35 1 5.0364 -1.4963 0.0195 36 1 -0.3077 -0.3002 2.3232 37 1 -0.4482 -1.4362 3.7002 38 1 -2.3385 -0.9992 1.3808 39 1 -2.7048 -1.5041 3.0585 40 1 -3.2818 -2.5817 0.0977 41 1 -1.6402 -3.1353 -0.3742 42 1 -2.1186 -5.4238 0.1880 43 1 -3.7068 -4.8946 -0.4457 44 1 -3.0021 -7.0063 0.3062 45 1 -3.7374 -3.3366 3.0306 46 1 -2.4160 -4.4837 3.3846 47 1 -0.4051 -4.0530 2.9087 48 1 -0.2547 -4.2253 1.1320 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041366858.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:47 Heat of formation + Delta-G solvation = -73.125952 kcal Electronic energy + Delta-G solvation = -30051.469364 eV Core-core repulsion = 26108.185224 eV Total energy + Delta-G solvation = -3943.284140 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.30383 -39.76640 -38.00156 -36.43100 -35.84479 -33.68093 -32.60466 -30.64374 -29.41220 -29.16829 -28.35532 -27.46922 -25.26814 -24.38878 -23.51889 -22.52173 -22.03239 -20.36559 -19.25638 -18.80659 -17.67873 -17.47023 -17.29516 -16.67678 -16.33655 -15.74400 -15.61973 -15.31344 -14.38665 -14.35935 -14.22135 -13.78607 -13.66831 -13.53085 -13.24409 -13.05649 -12.94285 -12.75795 -12.48230 -12.33514 -12.22781 -12.02516 -11.92952 -11.56833 -11.35977 -11.30615 -11.27253 -10.76255 -10.71531 -10.44104 -10.32632 -10.22679 -10.02268 -9.99086 -9.86080 -9.53275 -8.90618 -8.73898 -8.36449 -6.95080 -6.09869 -3.07010 2.41006 2.75621 3.39200 3.46052 3.53095 3.55303 3.71931 4.15119 4.18627 4.53139 4.54961 4.61435 4.73922 4.76327 4.81410 4.86110 4.88855 5.06046 5.11323 5.14691 5.20553 5.24019 5.35967 5.40006 5.52364 5.58463 5.65379 5.70406 5.76970 5.82343 5.85826 5.93324 5.98322 5.99843 6.15923 6.22182 6.32696 6.47512 6.57855 6.62972 6.69641 6.79111 7.02232 7.05889 7.47827 7.77902 8.04455 8.49719 9.03087 9.84154 10.38533 11.24692 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.024641 B = 0.003221 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.056315 B = 8691.428959 C = 8966.558315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.069 3.931 3 H 0.078 0.922 4 O -0.367 6.367 5 C 0.030 3.970 6 C -0.008 4.008 7 O -0.357 6.357 8 C 0.045 3.955 9 H 0.128 0.872 10 C 0.523 3.477 11 O -0.526 6.526 12 N -0.617 5.617 13 C 0.090 3.910 14 C -0.120 4.120 15 C -0.083 4.083 16 C -0.121 4.121 17 C 0.145 3.855 18 N -0.604 5.604 19 C -0.340 4.340 20 H 0.068 0.932 21 C -0.024 4.024 22 N -0.916 5.916 23 Si 1.063 2.937 24 H -0.294 1.294 25 H -0.291 1.291 26 H -0.293 1.293 27 C 0.152 3.848 28 C 0.124 3.876 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.055 0.945 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.024 0.976 43 H 0.053 0.947 44 H 0.269 0.731 45 H 0.031 0.969 46 H 0.024 0.976 47 H 0.073 0.927 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.976 19.531 1.781 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.010 3.990 3 H 0.096 0.904 4 O -0.286 6.286 5 C -0.047 4.047 6 C -0.084 4.084 7 O -0.275 6.275 8 C -0.017 4.017 9 H 0.146 0.854 10 C 0.311 3.689 11 O -0.403 6.403 12 N -0.353 5.353 13 C -0.033 4.033 14 C -0.158 4.158 15 C -0.084 4.084 16 C -0.160 4.160 17 C 0.019 3.981 18 N -0.332 5.332 19 C -0.467 4.467 20 H 0.086 0.914 21 C -0.226 4.226 22 N -0.557 5.557 23 Si 0.893 3.107 24 H -0.221 1.221 25 H -0.217 1.217 26 H -0.219 1.219 27 C 0.027 3.973 28 C 0.003 3.997 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.123 0.877 33 H 0.073 0.927 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.041 0.959 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.049 0.951 46 H 0.041 0.959 47 H 0.091 0.909 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.350 17.894 0.729 21.203 hybrid contribution 1.102 1.073 0.960 1.813 sum 12.452 18.967 1.689 22.752 Atomic orbital electron populations 1.22192 0.91770 1.04713 1.03392 1.22594 0.96481 0.95307 0.84617 0.90386 1.88171 1.20965 1.78270 1.41230 1.23219 0.81503 1.00415 0.99585 1.23912 0.99954 1.00284 0.84268 1.88142 1.17450 1.77876 1.44001 1.22823 0.83615 0.93940 1.01281 0.85441 1.20748 0.79807 0.90975 0.77367 1.90543 1.58709 1.44008 1.47036 1.49285 1.18550 1.13426 1.54027 1.22759 0.91037 0.92850 0.96635 1.22502 0.95137 0.96033 1.02147 1.21575 0.94363 0.94558 0.97937 1.22809 0.99796 0.99495 0.93877 1.21638 0.96241 0.91085 0.89130 1.44700 1.46830 1.38043 1.03590 1.19763 1.14326 1.07800 1.04857 0.91428 1.25657 1.05159 0.94962 0.96821 1.70755 1.03082 1.40087 1.41791 0.83540 0.75687 0.76076 0.75353 1.22143 1.21714 1.21948 1.21210 0.92822 0.91039 0.92277 1.22312 0.88567 0.86092 1.02742 0.90257 0.90737 0.90060 0.87707 0.92673 0.86874 0.88177 0.90143 0.90683 0.90505 0.89772 0.91399 0.91876 0.95868 0.92844 0.91901 0.95089 0.95859 0.90886 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 8.02 37.16 0.30 -1.21 16 2 C 0.07 0.71 3.15 -26.66 -0.08 0.63 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 4 O -0.37 -4.73 10.23 -48.80 -0.50 -5.22 16 5 C 0.03 0.31 7.05 37.23 0.26 0.57 16 6 C -0.01 -0.10 6.60 37.23 0.25 0.15 16 7 O -0.36 -4.53 10.63 -61.75 -0.66 -5.18 16 8 C 0.05 0.51 2.93 -27.81 -0.08 0.43 16 9 H 0.13 1.08 7.01 -51.93 -0.36 0.71 16 10 C 0.52 7.60 5.94 -10.99 -0.07 7.53 16 11 O -0.53 -9.58 13.80 -12.70 -0.18 -9.75 16 12 N -0.62 -8.16 2.39 -169.52 -0.41 -8.57 16 13 C 0.09 0.85 5.67 -2.17 -0.01 0.84 16 14 C -0.12 -1.33 5.94 -25.81 -0.15 -1.48 16 15 C -0.08 -1.29 0.79 -153.92 -0.12 -1.42 16 16 C -0.12 -2.14 5.76 -25.01 -0.14 -2.28 16 17 C 0.14 3.37 5.13 -2.22 -0.01 3.35 16 18 N -0.60 -15.10 3.36 -170.23 -0.57 -15.67 16 19 C -0.34 -9.59 10.03 -15.06 -0.15 -9.74 16 20 H 0.07 1.90 7.99 -52.49 -0.42 1.48 16 21 C -0.02 -0.70 5.04 -17.43 -0.09 -0.79 16 22 N -0.92 -27.98 12.78 55.49 0.71 -27.28 16 23 Si 1.06 25.56 30.01 -169.99 -5.10 20.46 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.15 3.00 6.45 -3.56 -0.02 2.97 16 28 C 0.12 1.98 6.02 -2.89 -0.02 1.96 16 29 H 0.08 0.51 6.39 -51.93 -0.33 0.18 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.95 5.19 -51.92 -0.27 0.68 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.11 1.66 5.00 -51.95 -0.26 1.40 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 0.55 4.35 -51.93 -0.23 0.32 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.78 7.47 -51.93 -0.39 0.40 16 39 H 0.08 0.86 7.40 -51.93 -0.38 0.48 16 40 H 0.07 1.14 7.91 -51.93 -0.41 0.73 16 41 H 0.06 1.07 7.96 -51.93 -0.41 0.66 16 42 H 0.02 0.59 6.94 -51.93 -0.36 0.23 16 43 H 0.05 1.38 7.64 -51.93 -0.40 0.99 16 44 H 0.27 8.28 6.00 -40.82 -0.25 8.03 16 45 H 0.03 0.59 7.48 -51.93 -0.39 0.20 16 46 H 0.02 0.47 7.44 -51.93 -0.39 0.09 16 47 H 0.07 1.17 7.50 -51.93 -0.39 0.78 16 48 H 0.09 1.60 7.59 -51.93 -0.39 1.20 16 LS Contribution 355.17 15.07 5.35 5.35 Total: -1.00 -34.60 355.17 -8.85 -43.45 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.36 Total: 0.88 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -0.15 Total: 1.52 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.27 Total: -51.51 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -1.33 Total: -20.16 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.10 Total: 20.46 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.60 -8.85 -43.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041366858.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.673 kcal (2) G-P(sol) polarization free energy of solvation -34.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds