Wall clock time and date at job start Fri Apr 10 2020 18:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.52081 * 2 1 4 4 O 1.43072 * 109.52708 * 239.80790 * 2 1 3 5 5 C 1.43080 * 113.59397 * 182.14623 * 4 2 1 6 6 C 1.53142 * 109.15227 * 57.95018 * 5 4 2 7 7 O 1.43084 * 109.14744 * 304.68703 * 6 5 4 8 8 C 1.43070 * 113.58967 * 57.95514 * 7 6 5 9 9 H 1.09000 * 109.57292 * 182.11059 * 8 7 6 10 10 C 1.50699 * 109.52685 * 61.95169 * 8 7 6 11 11 O 1.21280 * 119.99596 * 333.25165 * 10 8 7 12 12 N 1.34777 * 120.00566 * 153.25705 * 10 8 7 13 13 C 1.48264 * 127.72984 * 354.50348 * 12 10 8 14 14 C 1.54718 * 104.66579 * 141.19493 * 13 12 10 15 15 C 1.53036 * 104.47492 * 23.66004 * 14 13 12 16 16 C 1.53900 * 111.34672 * 238.31040 * 15 14 13 17 17 C 1.55357 * 101.35609 * 204.81874 * 16 15 14 18 18 N 1.47536 * 104.86820 * 36.02124 * 17 16 15 19 19 C 1.36938 * 125.67121 * 156.04338 * 18 17 16 20 20 H 1.07993 * 120.00356 * 190.15862 * 19 18 17 21 21 C 1.38812 * 119.99736 * 10.14880 * 19 18 17 22 22 N 1.31620 * 119.99969 * 30.46538 * 21 19 18 23 23 Si 1.86800 * 120.00256 * 210.18056 * 21 19 18 24 24 H 1.48494 * 109.47408 * 90.00211 * 23 21 19 25 25 H 1.48503 * 109.47434 * 210.00748 * 23 21 19 26 26 H 1.48501 * 109.47032 * 330.00328 * 23 21 19 27 27 C 1.47347 * 108.66141 * 335.77678 * 18 17 16 28 28 C 1.48446 * 127.73994 * 174.50465 * 12 10 8 29 29 H 1.08999 * 109.47349 * 305.61629 * 1 2 3 30 30 H 1.08997 * 109.46970 * 65.62264 * 1 2 3 31 31 H 1.09008 * 109.46839 * 185.61615 * 1 2 3 32 32 H 1.09004 * 109.52196 * 177.85348 * 5 4 2 33 33 H 1.08995 * 109.52111 * 298.04742 * 5 4 2 34 34 H 1.08991 * 109.52526 * 64.58989 * 6 5 4 35 35 H 1.09000 * 109.52337 * 184.78743 * 6 5 4 36 36 H 1.09000 * 110.39769 * 22.39608 * 13 12 10 37 37 H 1.09001 * 110.39397 * 259.98560 * 13 12 10 38 38 H 1.08997 * 110.42906 * 264.90767 * 14 13 12 39 39 H 1.08999 * 110.53621 * 142.46086 * 14 13 12 40 40 H 1.08996 * 111.02384 * 323.02481 * 16 15 14 41 41 H 1.08996 * 111.02817 * 86.90516 * 16 15 14 42 42 H 1.09001 * 110.46855 * 277.14094 * 17 16 15 43 43 H 1.08999 * 110.31406 * 154.82223 * 17 16 15 44 44 H 0.97001 * 120.00345 * 5.50111 * 22 21 19 45 45 H 1.08999 * 109.96807 * 121.53546 * 27 18 17 46 46 H 1.08995 * 109.97061 * 242.77337 * 27 18 17 47 47 H 1.09002 * 110.46546 * 99.70076 * 28 12 10 48 48 H 1.08996 * 110.46248 * 337.11430 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 8 2.0082 -0.6781 -1.1655 5 6 3.4346 -0.7718 -1.2288 6 6 3.9464 -1.4963 0.0195 7 8 3.4681 -0.8180 1.1851 8 6 2.0419 -0.7245 1.2483 9 1 1.7517 -0.1661 2.1383 10 6 1.4484 -2.1085 1.3063 11 8 2.0491 -3.0464 0.8263 12 7 0.2501 -2.3040 1.8914 13 6 -0.5740 -1.3133 2.6245 14 6 -2.0304 -1.6334 2.2120 15 6 -1.9917 -3.1007 1.7789 16 6 -2.4662 -3.2682 0.3245 17 6 -2.9571 -4.7421 0.3308 18 7 -3.5545 -4.9365 1.6657 19 6 -4.5019 -5.8712 1.9881 20 1 -4.9963 -5.8303 2.9474 21 6 -4.8270 -6.8712 1.0819 22 7 -3.9184 -7.3177 0.2407 23 14 -6.5515 -7.5887 1.0614 24 1 -7.4012 -6.8087 0.1262 25 1 -6.4937 -9.0038 0.6147 26 1 -7.1307 -7.5242 2.4273 27 6 -2.9577 -3.9619 2.5958 28 6 -0.5402 -3.5594 1.9463 29 1 -0.3634 0.5985 0.8354 30 1 -0.3633 0.4242 -0.9360 31 1 -0.3633 -1.0228 0.1006 32 1 3.7238 -1.3307 -2.1188 33 1 3.8638 0.2293 -1.2707 34 1 3.5812 -2.5232 0.0201 35 1 5.0364 -1.4963 0.0195 36 1 -0.3077 -0.3002 2.3232 37 1 -0.4482 -1.4362 3.7002 38 1 -2.3385 -0.9992 1.3808 39 1 -2.7048 -1.5041 3.0585 40 1 -3.2818 -2.5817 0.0977 41 1 -1.6402 -3.1353 -0.3742 42 1 -2.1186 -5.4238 0.1880 43 1 -3.7068 -4.8946 -0.4457 44 1 -3.0021 -7.0063 0.3062 45 1 -3.7374 -3.3366 3.0306 46 1 -2.4160 -4.4837 3.3846 47 1 -0.4051 -4.0530 2.9087 48 1 -0.2547 -4.2253 1.1320 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041366858.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:46 Heat of formation + Delta-G solvation = -96.806198 kcal Electronic energy + Delta-G solvation = -30052.496217 eV Core-core repulsion = 26108.185224 eV Total energy + Delta-G solvation = -3944.310993 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.28889 -40.95147 -39.19189 -37.64820 -36.98955 -34.98972 -33.97325 -32.03942 -30.95634 -30.17641 -29.58368 -28.52532 -26.81434 -25.96160 -24.31396 -23.75436 -22.93476 -22.23723 -20.40129 -20.03528 -19.52122 -18.60769 -18.16802 -17.63468 -17.28245 -16.77096 -16.73326 -16.20941 -16.15746 -15.73996 -15.55763 -15.25222 -15.02022 -14.83984 -14.61225 -14.29061 -14.08028 -13.68340 -13.64106 -13.36270 -13.25904 -13.03668 -12.93301 -12.86336 -12.82537 -12.53418 -12.44014 -12.31706 -12.15124 -11.90631 -11.79834 -11.66745 -11.60248 -11.50417 -11.33248 -10.77448 -10.50602 -9.89419 -9.82338 -9.04903 -8.37137 -5.29561 1.36543 1.56591 1.64699 1.72387 1.82082 2.57974 2.64223 2.67781 3.14988 3.23512 3.36622 3.42207 3.52396 3.61503 3.71146 3.83615 3.94598 4.06391 4.11336 4.16332 4.22091 4.31023 4.32259 4.36448 4.36940 4.46869 4.58775 4.61524 4.68869 4.78056 4.80653 4.83020 4.90604 4.92025 4.93570 4.99405 5.04540 5.14444 5.20070 5.27021 5.32543 5.36349 5.64407 5.74730 6.03913 6.27661 6.45377 6.86334 6.98311 7.70203 8.28486 8.97324 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.024641 B = 0.003221 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.056315 B = 8691.428959 C = 8966.558315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.065 3.935 3 H 0.108 0.892 4 O -0.399 6.399 5 C 0.029 3.971 6 C -0.010 4.010 7 O -0.367 6.367 8 C 0.048 3.952 9 H 0.166 0.834 10 C 0.512 3.488 11 O -0.576 6.576 12 N -0.613 5.613 13 C 0.090 3.910 14 C -0.111 4.111 15 C -0.069 4.069 16 C -0.102 4.102 17 C 0.149 3.851 18 N -0.627 5.627 19 C -0.345 4.345 20 H 0.068 0.932 21 C -0.083 4.083 22 N -0.949 5.949 23 Si 1.118 2.882 24 H -0.284 1.284 25 H -0.297 1.297 26 H -0.268 1.268 27 C 0.148 3.852 28 C 0.127 3.873 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.066 0.934 42 H -0.011 1.011 43 H 0.017 0.983 44 H 0.252 0.748 45 H 0.051 0.949 46 H 0.016 0.984 47 H 0.067 0.933 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.409 23.770 3.296 26.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.007 3.993 3 H 0.126 0.874 4 O -0.318 6.318 5 C -0.047 4.047 6 C -0.086 4.086 7 O -0.284 6.284 8 C -0.013 4.013 9 H 0.183 0.817 10 C 0.302 3.698 11 O -0.457 6.457 12 N -0.347 5.347 13 C -0.031 4.031 14 C -0.149 4.149 15 C -0.070 4.070 16 C -0.140 4.140 17 C 0.024 3.976 18 N -0.354 5.354 19 C -0.474 4.474 20 H 0.086 0.914 21 C -0.278 4.278 22 N -0.592 5.592 23 Si 0.942 3.058 24 H -0.211 1.211 25 H -0.224 1.224 26 H -0.193 1.193 27 C 0.023 3.977 28 C 0.004 3.996 29 H 0.135 0.865 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.128 0.872 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.006 0.994 43 H 0.035 0.965 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.034 0.966 47 H 0.086 0.914 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.779 22.199 2.290 24.783 hybrid contribution 1.334 -0.291 0.526 1.463 sum 12.113 21.908 2.817 25.191 Atomic orbital electron populations 1.22253 0.90933 1.03633 1.05141 1.22877 0.97233 0.96104 0.83101 0.87439 1.88136 1.22158 1.78978 1.42576 1.23316 0.80729 1.01612 0.99031 1.23885 1.01196 0.98535 0.84940 1.88115 1.18315 1.77577 1.44442 1.23103 0.82814 0.91794 1.03563 0.81707 1.21602 0.79677 0.92080 0.76402 1.90551 1.60198 1.45925 1.48988 1.49323 1.18394 1.13017 1.53959 1.23067 0.89028 0.93642 0.97351 1.22522 0.96853 0.91943 1.03608 1.21428 0.92667 0.97453 0.95488 1.22650 1.00259 0.95345 0.95726 1.21473 0.93914 0.94436 0.87813 1.45016 1.46894 1.38192 1.05309 1.20089 1.14575 1.07955 1.04754 0.91399 1.27124 1.07977 0.95955 0.96737 1.70884 1.02718 1.41946 1.43701 0.82826 0.71349 0.74898 0.76731 1.21084 1.22437 1.19272 1.21454 0.93855 0.90561 0.91821 1.22025 0.89632 0.87180 1.00746 0.86521 0.90597 0.92789 0.87216 0.90224 0.90465 0.86014 0.86251 0.88733 0.88563 0.87769 0.89510 0.91537 0.99361 0.96463 0.93772 0.93158 0.96639 0.91444 0.93856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 8.02 71.98 0.58 -1.77 16 2 C 0.06 1.12 3.15 30.64 0.10 1.22 16 3 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 4 O -0.40 -9.69 10.23 -136.01 -1.39 -11.08 16 5 C 0.03 0.57 7.05 72.03 0.51 1.08 16 6 C -0.01 -0.22 6.60 72.03 0.48 0.25 16 7 O -0.37 -8.57 10.63 -123.62 -1.31 -9.88 16 8 C 0.05 0.96 2.93 29.89 0.09 1.04 16 9 H 0.17 1.91 7.01 -2.39 -0.02 1.89 16 10 C 0.51 14.52 5.94 87.66 0.52 15.04 16 11 O -0.58 -22.01 13.80 14.43 0.20 -21.81 16 12 N -0.61 -15.25 2.39 -808.63 -1.94 -17.19 16 13 C 0.09 1.29 5.67 86.63 0.49 1.78 16 14 C -0.11 -1.98 5.94 31.19 0.19 -1.79 16 15 C -0.07 -2.08 0.79 -51.80 -0.04 -2.12 16 16 C -0.10 -3.59 5.76 31.71 0.18 -3.41 16 17 C 0.15 7.38 5.13 86.99 0.45 7.82 16 18 N -0.63 -32.23 3.36 -692.49 -2.32 -34.55 16 19 C -0.35 -19.90 10.03 84.03 0.84 -19.05 16 20 H 0.07 3.83 7.99 -2.91 -0.02 3.80 16 21 C -0.08 -4.89 5.04 84.86 0.43 -4.46 16 22 N -0.95 -61.02 12.78 21.65 0.28 -60.74 16 23 Si 1.12 52.39 30.01 68.60 2.06 54.45 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 C 0.15 5.73 6.45 86.23 0.56 6.29 16 28 C 0.13 4.13 6.02 86.05 0.52 4.65 16 29 H 0.12 0.73 6.39 -2.39 -0.02 0.72 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.10 5.19 -2.38 -0.01 1.09 16 32 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 2.39 5.00 -2.57 -0.01 2.37 16 35 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.12 0.83 4.35 -2.39 -0.01 0.82 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.10 1.43 7.47 -2.39 -0.02 1.41 16 39 H 0.10 1.55 7.40 -2.39 -0.02 1.54 16 40 H 0.09 2.76 7.91 -2.39 -0.02 2.74 16 41 H 0.07 2.31 7.96 -2.39 -0.02 2.30 16 42 H -0.01 -0.63 6.94 -2.39 -0.02 -0.64 16 43 H 0.02 0.94 7.64 -2.39 -0.02 0.93 16 44 H 0.25 16.66 6.00 -92.71 -0.56 16.10 16 45 H 0.05 1.79 7.48 -2.39 -0.02 1.77 16 46 H 0.02 0.63 7.44 -2.39 -0.02 0.61 16 47 H 0.07 2.23 7.50 -2.39 -0.02 2.22 16 48 H 0.04 1.76 7.59 -2.39 -0.02 1.74 16 Total: -1.00 -83.10 355.17 2.62 -80.48 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 1.18 Total: 13.76 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 5.87 Total: 6.57 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -3.98 Total: -112.48 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -2.51 Total: -42.77 kcal Atomic # 14 Polarization: 52.39 SS G_CDS: 2.06 Total: 54.45 kcal Total: -83.10 2.62 -80.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041366858.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.331 kcal (2) G-P(sol) polarization free energy of solvation -83.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds