Wall clock time and date at job start Fri Apr 10 2020 18:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47427 * 2 1 4 4 O 1.42906 * 109.46696 * 120.00147 * 2 1 3 5 5 C 1.50703 * 109.47134 * 239.99234 * 2 1 3 6 6 O 1.21271 * 120.00329 * 250.01711 * 5 2 1 7 7 N 1.34779 * 119.99513 * 70.02127 * 5 2 1 8 8 C 1.46845 * 120.38081 * 185.29357 * 7 5 2 9 9 C 1.53351 * 108.81279 * 123.07217 * 8 7 5 10 10 C 1.53180 * 108.76981 * 51.31412 * 9 8 7 11 11 C 1.52837 * 117.65515 * 90.01796 * 10 9 8 12 12 C 1.52911 * 117.73400 * 158.86271 * 10 9 8 13 13 H 1.09000 * 117.51841 * 359.85564 * 12 10 9 14 14 C 1.50691 * 117.49794 * 144.92164 * 12 10 9 15 15 O 1.21287 * 119.99936 * 63.55580 * 14 12 10 16 16 N 1.34777 * 120.00467 * 243.55154 * 14 12 10 17 17 C 1.46496 * 120.00502 * 179.97438 * 16 14 12 18 18 C 1.53006 * 109.47310 * 180.02562 * 17 16 14 19 19 C 1.50702 * 109.46933 * 180.02562 * 18 17 16 20 20 H 1.07992 * 120.00345 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99237 * 179.97438 * 19 18 17 22 22 N 1.31505 * 120.00528 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99516 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47051 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47129 * 119.99860 * 23 21 19 26 26 H 1.48495 * 109.46950 * 240.00395 * 23 21 19 27 27 C 1.53184 * 115.07719 * 304.54970 * 10 9 8 28 28 C 1.46842 * 120.38464 * 5.26384 * 7 5 2 29 29 H 1.08991 * 109.47581 * 174.99408 * 1 2 3 30 30 H 1.09000 * 109.47408 * 294.99843 * 1 2 3 31 31 H 1.09010 * 109.46724 * 54.99150 * 1 2 3 32 32 H 0.96695 * 114.00075 * 59.99584 * 4 2 1 33 33 H 1.09000 * 109.58296 * 3.26635 * 8 7 5 34 34 H 1.09007 * 109.68690 * 242.93104 * 8 7 5 35 35 H 1.09003 * 109.58441 * 291.52286 * 9 8 7 36 36 H 1.09001 * 109.58677 * 171.10172 * 9 8 7 37 37 H 1.08997 * 117.50584 * 0.23905 * 11 10 9 38 38 H 1.09009 * 117.50220 * 215.21643 * 11 10 9 39 39 H 0.97001 * 119.99643 * 0.02562 * 16 14 12 40 40 H 1.09006 * 109.47226 * 300.00309 * 17 16 14 41 41 H 1.09004 * 109.46953 * 60.00430 * 17 16 14 42 42 H 1.08999 * 109.46799 * 300.00513 * 18 17 16 43 43 H 1.08997 * 109.46728 * 60.00304 * 18 17 16 44 44 H 0.96996 * 120.00392 * 179.97438 * 22 21 19 45 45 H 1.08994 * 109.59072 * 175.22786 * 27 10 9 46 46 H 1.09002 * 109.58456 * 295.66235 * 27 10 9 47 47 H 1.09002 * 109.57752 * 356.71988 * 28 7 5 48 48 H 1.08998 * 109.58391 * 116.99071 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 2.0323 -0.7106 -1.2304 6 8 2.5728 -1.7914 -1.1283 7 7 1.8809 -0.1448 -2.4443 8 6 2.2612 -0.8783 -3.6582 9 6 1.0422 -0.9678 -4.5843 10 6 0.4599 0.4369 -4.7697 11 6 0.9919 1.2778 -5.9298 12 6 -0.4183 0.6870 -5.9962 13 1 -0.5823 -0.1484 -6.6769 14 6 -1.5785 1.6357 -5.8395 15 8 -1.3765 2.8027 -5.5779 16 7 -2.8406 1.1876 -5.9900 17 6 -3.9686 2.1098 -5.8370 18 6 -5.2799 1.3525 -6.0561 19 6 -6.4401 2.3014 -5.8994 20 1 -6.2603 3.3405 -5.6664 21 6 -7.7313 1.8428 -6.0534 22 7 -7.9503 0.5774 -6.3366 23 14 -9.1695 3.0191 -5.8599 24 1 -8.6589 4.3776 -5.5448 25 1 -9.9461 3.0638 -7.1248 26 1 -10.0465 2.5513 -4.7567 27 6 0.0953 1.1650 -3.4722 28 6 1.3331 1.2120 -2.5682 29 1 -0.3634 -1.0236 -0.0897 30 1 -0.3634 0.4343 0.9314 31 1 -0.3633 0.5896 -0.8418 32 1 1.7208 -1.5952 1.2330 33 1 2.5909 -1.8821 -3.3903 34 1 3.0688 -0.3522 -4.1673 35 1 0.2908 -1.6188 -4.1373 36 1 1.3466 -1.3678 -5.5514 37 1 1.7554 0.8312 -6.5667 38 1 1.0802 2.3530 -5.7731 39 1 -3.0022 0.2542 -6.1988 40 1 -3.9577 2.5339 -4.8329 41 1 -3.8846 2.9114 -6.5709 42 1 -5.2910 0.9282 -7.0600 43 1 -5.3637 0.5512 -5.3219 44 1 -8.8586 0.2548 -6.4447 45 1 -0.2285 2.1802 -3.7015 46 1 -0.7072 0.6289 -2.9655 47 1 1.0519 1.5838 -1.5829 48 1 2.0833 1.8702 -3.0066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269258215.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:07 Heat of formation + Delta-G solvation = -112.956504 kcal Electronic energy + Delta-G solvation = -27960.510632 eV Core-core repulsion = 24015.499309 eV Total energy + Delta-G solvation = -3945.011323 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.04304 -39.94182 -38.13533 -36.82912 -35.68577 -34.82028 -32.88416 -32.34676 -30.88471 -30.16141 -29.57981 -25.59877 -25.22762 -24.03662 -23.32259 -23.27825 -20.98318 -20.68259 -19.78341 -18.81822 -17.97135 -17.19488 -17.01243 -16.37269 -15.94106 -15.56561 -15.37795 -15.23924 -15.03268 -14.71801 -14.49332 -14.20368 -14.05697 -13.92966 -13.49626 -13.23836 -13.02592 -12.78553 -12.56696 -12.37167 -12.35666 -12.14936 -12.10545 -11.88087 -11.53485 -11.25791 -11.15496 -11.09334 -11.00390 -10.68010 -10.44333 -10.34069 -10.16403 -9.84403 -9.80826 -9.51682 -9.23809 -8.95738 -8.59668 -8.41015 -6.14272 -4.17375 2.18458 2.56399 2.66359 3.24669 3.32354 3.36590 3.52274 3.70559 3.87931 4.01985 4.31234 4.37702 4.39789 4.53440 4.55007 4.58834 4.66997 4.71488 4.86506 5.06528 5.11595 5.16338 5.21702 5.22968 5.24688 5.31665 5.35278 5.45331 5.58980 5.61955 5.66180 5.70123 5.86660 5.92928 6.00841 6.18201 6.27464 6.28268 6.66707 6.85332 6.93473 7.16763 7.46049 7.55425 7.75394 7.83724 7.95627 8.22247 8.58486 8.88922 9.47887 10.97320 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014906 B = 0.002521 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.944442 B =11103.555569 C =12174.704993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.089 3.911 3 H 0.123 0.877 4 O -0.541 6.541 5 C 0.488 3.512 6 O -0.539 6.539 7 N -0.605 5.605 8 C 0.115 3.885 9 C -0.097 4.097 10 C -0.096 4.096 11 C -0.137 4.137 12 C -0.181 4.181 13 H 0.121 0.879 14 C 0.536 3.464 15 O -0.552 6.552 16 N -0.717 5.717 17 C 0.122 3.878 18 C 0.012 3.988 19 C -0.522 4.522 20 H 0.060 0.940 21 C 0.059 3.941 22 N -0.894 5.894 23 Si 0.896 3.104 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.109 4.109 28 C 0.107 3.893 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.384 0.616 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.398 0.602 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.262 0.738 45 H 0.098 0.902 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.088 -3.315 6.873 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.026 3.974 3 H 0.140 0.860 4 O -0.347 6.347 5 C 0.276 3.724 6 O -0.416 6.416 7 N -0.340 5.340 8 C -0.008 4.008 9 C -0.135 4.135 10 C -0.097 4.097 11 C -0.175 4.175 12 C -0.202 4.202 13 H 0.139 0.861 14 C 0.321 3.679 15 O -0.431 6.431 16 N -0.366 5.366 17 C 0.000 4.000 18 C -0.025 4.025 19 C -0.561 4.561 20 H 0.078 0.922 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.724 3.276 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.147 4.147 28 C -0.016 4.016 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.233 0.767 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.127 0.873 39 H 0.231 0.769 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.071 0.929 45 H 0.116 0.884 46 H 0.092 0.908 47 H 0.107 0.893 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 21.617 -2.596 7.214 22.936 hybrid contribution -1.460 -0.450 -0.491 1.605 sum 20.157 -3.046 6.724 21.466 Atomic orbital electron populations 1.22563 0.93508 1.03952 1.04460 1.21854 0.94832 0.97177 0.83541 0.86001 1.86587 1.77508 1.30033 1.40531 1.21678 0.78891 0.86418 0.85430 1.90694 1.43021 1.21901 1.86002 1.48100 1.63226 1.16695 1.05954 1.21569 0.96430 0.98303 0.84475 1.21578 0.97528 0.94264 1.00146 1.21372 1.01716 0.96701 0.89894 1.23099 0.93856 1.00729 0.99773 1.22442 0.92064 1.02470 1.03240 0.86146 1.19517 0.83580 0.87887 0.76889 1.90646 1.85236 1.17929 1.49272 1.46285 1.06014 1.13877 1.70412 1.21728 0.85384 0.92373 1.00511 1.19325 0.89493 0.96025 0.97655 1.21079 0.90613 0.95710 1.48649 0.92207 1.24999 0.99115 0.95228 0.94947 1.69955 1.21002 1.14009 1.48282 0.86464 0.82207 0.81174 0.77773 1.19568 1.20908 1.20901 1.21701 0.97074 1.02456 0.93497 1.21889 0.96026 0.82645 1.01031 0.91521 0.90117 0.90225 0.76657 0.88803 0.91094 0.90724 0.90107 0.88128 0.87312 0.76858 0.92608 0.92561 0.95971 0.95981 0.92858 0.88401 0.90831 0.89284 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.31 9.20 37.16 0.34 -0.97 16 2 C 0.09 0.73 3.14 -27.88 -0.09 0.64 16 3 H 0.12 0.81 7.07 -51.93 -0.37 0.45 16 4 O -0.54 -5.22 13.03 -54.94 -0.72 -5.93 16 5 C 0.49 5.03 7.02 -10.98 -0.08 4.96 16 6 O -0.54 -7.40 15.70 -14.14 -0.22 -7.62 16 7 N -0.61 -5.25 2.92 -172.70 -0.50 -5.76 16 8 C 0.11 0.93 6.43 -3.67 -0.02 0.91 16 9 C -0.10 -0.75 5.83 -26.46 -0.15 -0.90 16 10 C -0.10 -0.87 1.94 -154.45 -0.30 -1.17 16 11 C -0.14 -1.27 9.45 -26.80 -0.25 -1.52 16 12 C -0.18 -1.97 5.92 -91.80 -0.54 -2.52 16 13 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 14 C 0.54 8.23 6.77 -10.99 -0.07 8.16 16 15 O -0.55 -10.18 14.85 5.55 0.08 -10.09 16 16 N -0.72 -11.78 5.56 -60.29 -0.33 -12.12 16 17 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 18 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 19 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 20 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -25.72 13.28 55.43 0.74 -24.99 16 23 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 27 C -0.11 -1.03 5.08 -26.45 -0.13 -1.17 16 28 C 0.11 0.79 5.59 -3.67 -0.02 0.77 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.54 5.30 -51.92 -0.28 0.27 16 32 H 0.38 2.88 8.73 45.56 0.40 3.28 16 33 H 0.09 0.87 6.98 -51.93 -0.36 0.51 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.11 1.15 7.68 -51.92 -0.40 0.76 16 39 H 0.40 5.73 8.47 -40.82 -0.35 5.39 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.10 1.13 6.33 -51.93 -0.33 0.80 16 46 H 0.07 0.74 7.36 -51.93 -0.38 0.36 16 47 H 0.09 0.52 4.60 -51.93 -0.24 0.28 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 384.09 15.07 5.79 5.79 Total: -1.00 -33.58 384.09 -9.01 -42.59 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.91 Total: 5.29 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.90 Total: -3.16 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: -0.10 Total: -42.86 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.86 Total: -23.64 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.58 -9.01 -42.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269258215.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.366 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds