Wall clock time and date at job start Fri Apr 10 2020 18:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47427 * 2 1 4 4 O 1.42906 * 109.46696 * 120.00147 * 2 1 3 5 5 C 1.50703 * 109.47134 * 239.99234 * 2 1 3 6 6 O 1.21271 * 120.00329 * 250.01711 * 5 2 1 7 7 N 1.34779 * 119.99513 * 70.02127 * 5 2 1 8 8 C 1.46845 * 120.38081 * 185.29357 * 7 5 2 9 9 C 1.53351 * 108.81279 * 123.07217 * 8 7 5 10 10 C 1.53180 * 108.76981 * 51.31412 * 9 8 7 11 11 C 1.52837 * 117.65515 * 90.01796 * 10 9 8 12 12 C 1.52911 * 117.73400 * 158.86271 * 10 9 8 13 13 H 1.09000 * 117.51841 * 359.85564 * 12 10 9 14 14 C 1.50691 * 117.49794 * 144.92164 * 12 10 9 15 15 O 1.21287 * 119.99936 * 63.55580 * 14 12 10 16 16 N 1.34777 * 120.00467 * 243.55154 * 14 12 10 17 17 C 1.46496 * 120.00502 * 179.97438 * 16 14 12 18 18 C 1.53006 * 109.47310 * 180.02562 * 17 16 14 19 19 C 1.50702 * 109.46933 * 180.02562 * 18 17 16 20 20 H 1.07992 * 120.00345 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99237 * 179.97438 * 19 18 17 22 22 N 1.31505 * 120.00528 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99516 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47051 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47129 * 119.99860 * 23 21 19 26 26 H 1.48495 * 109.46950 * 240.00395 * 23 21 19 27 27 C 1.53184 * 115.07719 * 304.54970 * 10 9 8 28 28 C 1.46842 * 120.38464 * 5.26384 * 7 5 2 29 29 H 1.08991 * 109.47581 * 174.99408 * 1 2 3 30 30 H 1.09000 * 109.47408 * 294.99843 * 1 2 3 31 31 H 1.09010 * 109.46724 * 54.99150 * 1 2 3 32 32 H 0.96695 * 114.00075 * 59.99584 * 4 2 1 33 33 H 1.09000 * 109.58296 * 3.26635 * 8 7 5 34 34 H 1.09007 * 109.68690 * 242.93104 * 8 7 5 35 35 H 1.09003 * 109.58441 * 291.52286 * 9 8 7 36 36 H 1.09001 * 109.58677 * 171.10172 * 9 8 7 37 37 H 1.08997 * 117.50584 * 0.23905 * 11 10 9 38 38 H 1.09009 * 117.50220 * 215.21643 * 11 10 9 39 39 H 0.97001 * 119.99643 * 0.02562 * 16 14 12 40 40 H 1.09006 * 109.47226 * 300.00309 * 17 16 14 41 41 H 1.09004 * 109.46953 * 60.00430 * 17 16 14 42 42 H 1.08999 * 109.46799 * 300.00513 * 18 17 16 43 43 H 1.08997 * 109.46728 * 60.00304 * 18 17 16 44 44 H 0.96996 * 120.00392 * 179.97438 * 22 21 19 45 45 H 1.08994 * 109.59072 * 175.22786 * 27 10 9 46 46 H 1.09002 * 109.58456 * 295.66235 * 27 10 9 47 47 H 1.09002 * 109.57752 * 356.71988 * 28 7 5 48 48 H 1.08998 * 109.58391 * 116.99071 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 2.0323 -0.7106 -1.2304 6 8 2.5728 -1.7914 -1.1283 7 7 1.8809 -0.1448 -2.4443 8 6 2.2612 -0.8783 -3.6582 9 6 1.0422 -0.9678 -4.5843 10 6 0.4599 0.4369 -4.7697 11 6 0.9919 1.2778 -5.9298 12 6 -0.4183 0.6870 -5.9962 13 1 -0.5823 -0.1484 -6.6769 14 6 -1.5785 1.6357 -5.8395 15 8 -1.3765 2.8027 -5.5779 16 7 -2.8406 1.1876 -5.9900 17 6 -3.9686 2.1098 -5.8370 18 6 -5.2799 1.3525 -6.0561 19 6 -6.4401 2.3014 -5.8994 20 1 -6.2603 3.3405 -5.6664 21 6 -7.7313 1.8428 -6.0534 22 7 -7.9503 0.5774 -6.3366 23 14 -9.1695 3.0191 -5.8599 24 1 -8.6589 4.3776 -5.5448 25 1 -9.9461 3.0638 -7.1248 26 1 -10.0465 2.5513 -4.7567 27 6 0.0953 1.1650 -3.4722 28 6 1.3331 1.2120 -2.5682 29 1 -0.3634 -1.0236 -0.0897 30 1 -0.3634 0.4343 0.9314 31 1 -0.3633 0.5896 -0.8418 32 1 1.7208 -1.5952 1.2330 33 1 2.5909 -1.8821 -3.3903 34 1 3.0688 -0.3522 -4.1673 35 1 0.2908 -1.6188 -4.1373 36 1 1.3466 -1.3678 -5.5514 37 1 1.7554 0.8312 -6.5667 38 1 1.0802 2.3530 -5.7731 39 1 -3.0022 0.2542 -6.1988 40 1 -3.9577 2.5339 -4.8329 41 1 -3.8846 2.9114 -6.5709 42 1 -5.2910 0.9282 -7.0600 43 1 -5.3637 0.5512 -5.3219 44 1 -8.8586 0.2548 -6.4447 45 1 -0.2285 2.1802 -3.7015 46 1 -0.7072 0.6289 -2.9655 47 1 1.0519 1.5838 -1.5829 48 1 2.0833 1.8702 -3.0066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269258215.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:06 Heat of formation + Delta-G solvation = -136.447434 kcal Electronic energy + Delta-G solvation = -27961.529275 eV Core-core repulsion = 24015.499309 eV Total energy + Delta-G solvation = -3946.029966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.84556 -40.96326 -39.12790 -37.58668 -36.73207 -36.23378 -34.80330 -33.01573 -31.76700 -31.47364 -30.63034 -27.21749 -26.01451 -24.83636 -24.58051 -23.94941 -22.70249 -21.46475 -20.94355 -19.55464 -18.79457 -18.55940 -17.95624 -17.88709 -16.73231 -16.59811 -16.49486 -16.44490 -16.12612 -15.98930 -15.64976 -15.14259 -14.99176 -14.78758 -14.60114 -14.30042 -14.20450 -14.09529 -13.47166 -13.27463 -13.22022 -13.06710 -12.98409 -12.89564 -12.82376 -12.62004 -12.52042 -12.27416 -12.19904 -11.87271 -11.72245 -11.64170 -11.44536 -11.17080 -10.96689 -10.70310 -10.62295 -10.57716 -9.99354 -9.67948 -8.25504 -6.35994 1.40059 1.40281 1.41460 1.53405 1.54167 1.89224 2.24907 2.44666 2.82401 3.09485 3.22236 3.37284 3.56259 3.63933 3.77877 3.86357 3.91944 3.99560 4.03746 4.09135 4.25465 4.39377 4.47625 4.49938 4.51161 4.55940 4.63480 4.70005 4.72992 4.81097 4.84396 4.90917 4.93242 4.99051 5.08409 5.11810 5.24630 5.27651 5.32146 5.49025 5.50959 5.56872 5.78081 6.15073 6.22596 6.54189 6.66409 6.77916 7.00021 7.31482 7.33741 8.86477 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014906 B = 0.002521 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.944442 B =11103.555569 C =12174.704993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.091 3.909 3 H 0.140 0.860 4 O -0.556 6.556 5 C 0.484 3.516 6 O -0.579 6.579 7 N -0.601 5.601 8 C 0.112 3.888 9 C -0.088 4.088 10 C -0.086 4.086 11 C -0.124 4.124 12 C -0.192 4.192 13 H 0.143 0.857 14 C 0.535 3.465 15 O -0.584 6.584 16 N -0.717 5.717 17 C 0.143 3.857 18 C 0.023 3.977 19 C -0.546 4.546 20 H 0.059 0.941 21 C 0.007 3.993 22 N -0.927 5.927 23 Si 0.964 3.036 24 H -0.265 1.265 25 H -0.277 1.277 26 H -0.277 1.277 27 C -0.109 4.109 28 C 0.110 3.890 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.391 0.609 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.409 0.591 40 H 0.046 0.954 41 H 0.044 0.956 42 H 0.006 0.994 43 H 0.007 0.993 44 H 0.266 0.734 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.105 0.895 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.985 -2.895 6.738 23.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.028 3.972 3 H 0.158 0.842 4 O -0.363 6.363 5 C 0.273 3.727 6 O -0.459 6.459 7 N -0.334 5.334 8 C -0.010 4.010 9 C -0.126 4.126 10 C -0.087 4.087 11 C -0.161 4.161 12 C -0.213 4.213 13 H 0.161 0.839 14 C 0.323 3.677 15 O -0.466 6.466 16 N -0.367 5.367 17 C 0.019 3.981 18 C -0.014 4.014 19 C -0.584 4.584 20 H 0.077 0.923 21 C -0.192 4.192 22 N -0.566 5.566 23 Si 0.788 3.212 24 H -0.189 1.189 25 H -0.203 1.203 26 H -0.202 1.202 27 C -0.147 4.147 28 C -0.012 4.012 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.241 0.759 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.149 0.851 38 H 0.113 0.887 39 H 0.244 0.756 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.025 0.975 43 H 0.026 0.974 44 H 0.075 0.925 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.123 0.877 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 22.525 -2.177 7.063 23.706 hybrid contribution -1.720 -0.571 -0.460 1.870 sum 20.805 -2.748 6.603 22.000 Atomic orbital electron populations 1.22513 0.92620 1.03681 1.05024 1.21986 0.95390 0.97548 0.82234 0.84223 1.86555 1.77911 1.30724 1.41087 1.22068 0.78326 0.85968 0.86351 1.90673 1.45002 1.23635 1.86618 1.48175 1.62394 1.17031 1.05844 1.21652 0.97080 0.97953 0.84325 1.21543 0.96918 0.92976 1.01146 1.21443 1.00517 0.97529 0.89230 1.23194 0.93001 1.00142 0.99732 1.22428 0.90906 1.02576 1.05406 0.83880 1.20247 0.83922 0.88176 0.75358 1.90629 1.85677 1.19726 1.50524 1.46134 1.05686 1.13847 1.71005 1.21180 0.85276 0.92141 0.99490 1.19126 0.90839 0.95381 0.96102 1.21497 0.91975 0.96219 1.48705 0.92298 1.25867 1.01938 0.96882 0.94489 1.70055 1.21850 1.15700 1.49032 0.85412 0.78657 0.79143 0.77940 1.18874 1.20293 1.20221 1.21639 0.97782 1.01051 0.94225 1.21952 0.95393 0.82153 1.01657 0.92188 0.89228 0.89956 0.75913 0.90016 0.89371 0.91688 0.87815 0.85118 0.88742 0.75617 0.93525 0.93744 0.97517 0.97440 0.92549 0.90525 0.91785 0.87700 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 9.20 71.98 0.66 -1.67 16 2 C 0.09 1.38 3.14 29.85 0.09 1.47 16 3 H 0.14 1.58 7.07 -2.39 -0.02 1.56 16 4 O -0.56 -10.32 13.03 -130.13 -1.70 -12.02 16 5 C 0.48 9.53 7.02 87.66 0.62 10.14 16 6 O -0.58 -15.78 15.70 15.84 0.25 -15.53 16 7 N -0.60 -9.44 2.92 -818.69 -2.39 -11.83 16 8 C 0.11 1.59 6.43 86.43 0.56 2.14 16 9 C -0.09 -1.13 5.83 30.77 0.18 -0.95 16 10 C -0.09 -1.38 1.94 -52.14 -0.10 -1.48 16 11 C -0.12 -1.94 9.45 30.55 0.29 -1.65 16 12 C -0.19 -3.81 5.92 -11.56 -0.07 -3.88 16 13 H 0.14 2.21 8.14 -2.39 -0.02 2.19 16 14 C 0.53 16.15 6.77 87.65 0.59 16.74 16 15 O -0.58 -21.59 14.85 -3.05 -0.05 -21.63 16 16 N -0.72 -23.54 5.56 -463.05 -2.57 -26.11 16 17 C 0.14 5.94 5.61 86.38 0.48 6.42 16 18 C 0.02 1.13 5.09 29.85 0.15 1.29 16 19 C -0.55 -30.00 9.11 25.60 0.23 -29.77 16 20 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 21 C 0.01 0.39 5.46 84.66 0.46 0.85 16 22 N -0.93 -53.74 13.28 21.45 0.28 -53.45 16 23 Si 0.96 42.98 29.54 68.60 2.03 45.01 16 24 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 27 C -0.11 -1.93 5.08 30.78 0.16 -1.77 16 28 C 0.11 1.41 5.59 86.43 0.48 1.90 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.01 5.30 -2.38 -0.01 1.00 16 32 H 0.39 5.82 8.73 -74.06 -0.65 5.17 16 33 H 0.08 1.42 6.98 -2.39 -0.02 1.40 16 34 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.10 0.91 8.10 -2.39 -0.02 0.89 16 37 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.83 7.68 -2.38 -0.02 1.81 16 39 H 0.41 11.65 8.47 -92.71 -0.79 10.87 16 40 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 41 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 42 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 45 H 0.08 1.74 6.33 -2.39 -0.02 1.73 16 46 H 0.06 1.25 7.36 -2.39 -0.02 1.23 16 47 H 0.10 1.01 4.60 -2.39 -0.01 1.00 16 48 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -73.04 384.09 0.20 -72.84 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -0.45 Total: 22.95 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 4.79 Total: -0.22 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -4.68 Total: -91.39 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -1.49 Total: -49.19 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -73.04 0.20 -72.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269258215.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.604 kcal (2) G-P(sol) polarization free energy of solvation -73.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds