Wall clock time and date at job start Fri Apr 10 2020 18:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42892 * 114.00260 * 2 1 4 4 H 1.08999 * 109.47207 * 30.00224 * 3 2 1 5 5 C 1.53002 * 109.47298 * 270.00449 * 3 2 1 6 6 C 1.50700 * 109.47423 * 150.00133 * 3 2 1 7 7 O 1.21286 * 119.99454 * 12.42547 * 6 3 2 8 8 N 1.34773 * 120.00243 * 192.42910 * 6 3 2 9 9 C 1.47647 * 125.81375 * 5.11113 * 8 6 3 10 10 C 1.54979 * 104.85783 * 203.96486 * 9 8 6 11 11 C 1.55320 * 101.67254 * 323.41135 * 10 9 8 12 12 C 1.46239 * 125.80937 * 184.80827 * 8 6 3 13 13 C 1.53889 * 110.90595 * 299.88766 * 12 8 6 14 14 C 1.54635 * 101.59242 * 96.51215 * 13 12 8 15 15 N 1.46853 * 105.50588 * 24.78080 * 14 13 12 16 16 C 1.46495 * 124.36796 * 163.12571 * 15 14 13 17 17 C 1.52997 * 109.47491 * 90.00096 * 16 15 14 18 18 C 1.50694 * 109.47661 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99633 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00303 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00034 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99995 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47185 * 59.99737 * 22 20 18 24 24 H 1.48496 * 109.47189 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47136 * 299.99848 * 22 20 18 26 26 C 1.34657 * 111.25912 * 343.12331 * 15 14 13 27 27 O 1.21281 * 125.07163 * 180.83806 * 26 15 14 28 28 H 1.09004 * 109.46936 * 299.99700 * 1 2 3 29 29 H 1.09000 * 109.47756 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47390 * 59.99612 * 1 2 3 31 31 H 1.09002 * 109.47065 * 177.62913 * 5 3 2 32 32 H 1.09002 * 109.46924 * 297.62462 * 5 3 2 33 33 H 1.08995 * 109.47561 * 57.62362 * 5 3 2 34 34 H 1.08994 * 110.36223 * 322.81479 * 9 8 6 35 35 H 1.08998 * 110.36211 * 85.01990 * 9 8 6 36 36 H 1.09007 * 110.98459 * 81.50792 * 10 9 8 37 37 H 1.08998 * 110.98925 * 205.27186 * 10 9 8 38 38 H 1.08994 * 110.77013 * 153.20326 * 11 10 9 39 39 H 1.09009 * 110.75751 * 276.40766 * 11 10 9 40 40 H 1.09006 * 110.99842 * 214.58861 * 13 12 8 41 41 H 1.09000 * 111.00031 * 338.43479 * 13 12 8 42 42 H 1.09000 * 110.24076 * 143.78722 * 14 13 12 43 43 H 1.08996 * 110.24465 * 265.68420 * 14 13 12 44 44 H 1.09002 * 109.46910 * 210.00004 * 16 15 14 45 45 H 1.08993 * 109.47395 * 329.99410 * 16 15 14 46 46 H 1.09006 * 109.46515 * 300.00060 * 17 16 15 47 47 H 1.09002 * 109.47446 * 59.99040 * 17 16 15 48 48 H 0.96991 * 119.99997 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2176 1.7713 -1.4425 6 6 3.3387 1.2638 0.7104 7 8 3.8535 0.1971 0.9714 8 7 3.9545 2.4118 1.0556 9 6 3.3997 3.7710 0.8982 10 6 4.6378 4.7011 0.8378 11 6 5.5962 4.0146 1.8490 12 6 5.2835 2.5230 1.6556 13 6 5.3414 1.7819 3.0031 14 6 5.9433 0.4207 2.5835 15 7 6.6951 0.6873 1.3505 16 6 7.7087 -0.2096 0.7897 17 6 7.0420 -1.1945 -0.1727 18 6 8.0848 -2.1166 -0.7500 19 1 9.1196 -2.0105 -0.4598 20 6 7.7177 -3.0958 -1.6487 21 7 6.4575 -3.2253 -2.0016 22 14 9.0102 -4.2392 -2.3637 23 1 9.6696 -4.9896 -1.2649 24 1 8.3631 -5.1951 -3.2979 25 1 10.0256 -3.4415 -3.0972 26 6 6.3325 1.8623 0.8019 27 8 6.7838 2.3200 -0.2266 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 2.6218 2.7837 -1.4427 32 1 2.9159 1.1012 -1.9439 33 1 1.2630 1.7611 -1.9685 34 1 2.8264 3.8420 -0.0261 35 1 2.7731 4.0262 1.7528 36 1 5.0692 4.7122 -0.1632 37 1 4.3843 5.7102 1.1625 38 1 6.6361 4.2290 1.6027 39 1 5.3700 4.3266 2.8687 40 1 5.9957 2.2986 3.7052 41 1 4.3433 1.6551 3.4223 42 1 6.6118 0.0486 3.3598 43 1 5.1485 -0.3006 2.3935 44 1 8.4542 0.3760 0.2516 45 1 8.1925 -0.7606 1.5961 46 1 6.2965 -1.7800 0.3655 47 1 6.5582 -0.6435 -0.9792 48 1 6.1992 -3.9144 -2.6335 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269773723.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:15 Heat of formation + Delta-G solvation = -126.219560 kcal Electronic energy + Delta-G solvation = -30091.814843 eV Core-core repulsion = 26146.228391 eV Total energy + Delta-G solvation = -3945.586452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.54005 -40.44561 -38.80085 -38.03860 -37.43426 -35.65576 -33.96910 -33.11736 -31.82439 -30.77411 -28.96103 -27.75556 -27.04413 -25.93633 -24.72553 -23.74481 -23.04880 -22.11247 -21.09036 -19.77092 -18.72465 -18.51069 -17.85411 -17.41126 -17.16934 -16.77335 -16.49354 -16.40299 -16.09988 -15.82583 -15.43709 -14.94353 -14.83500 -14.62313 -14.48950 -14.35211 -14.31669 -13.86595 -13.72161 -13.61126 -13.40245 -13.32444 -13.15739 -12.86151 -12.84729 -12.73000 -12.43284 -12.18404 -12.09242 -12.05257 -11.98647 -11.78663 -11.73403 -11.46543 -11.00852 -10.92263 -10.65183 -10.51660 -9.68884 -9.51048 -8.25626 -6.42758 1.17287 1.33067 1.39870 1.47617 1.51709 1.94129 2.15000 2.38059 2.92711 3.05333 3.21603 3.33183 3.52979 3.60178 3.79270 3.80494 3.93226 4.05039 4.17973 4.21594 4.25331 4.37833 4.44363 4.49856 4.52093 4.58078 4.62162 4.66472 4.74628 4.76484 4.80954 4.82413 4.92603 4.94666 5.08063 5.10036 5.15885 5.27856 5.31938 5.35735 5.40212 5.54403 5.77789 6.07446 6.09419 6.28597 6.41460 6.73568 7.14088 7.17222 7.27773 8.86528 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.011571 B = 0.004698 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.190919 B = 5958.898195 C = 7415.424909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.404 6.404 3 C 0.084 3.916 4 H 0.132 0.868 5 C -0.167 4.167 6 C 0.505 3.495 7 O -0.545 6.545 8 N -0.600 5.600 9 C 0.087 3.913 10 C -0.126 4.126 11 C -0.103 4.103 12 C 0.133 3.867 13 C -0.115 4.115 14 C 0.089 3.911 15 N -0.602 5.602 16 C 0.141 3.859 17 C 0.040 3.960 18 C -0.550 4.550 19 H 0.071 0.929 20 C -0.005 4.005 21 N -0.935 5.935 22 Si 0.980 3.020 23 H -0.257 1.257 24 H -0.281 1.281 25 H -0.265 1.265 26 C 0.494 3.506 27 O -0.583 6.583 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.020 0.980 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.052 0.948 37 H 0.132 0.868 38 H 0.072 0.928 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.089 0.911 46 H -0.017 1.017 47 H -0.042 1.042 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.616 20.441 12.892 27.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.323 6.323 3 C 0.023 3.977 4 H 0.149 0.851 5 C -0.225 4.225 6 C 0.294 3.706 7 O -0.420 6.420 8 N -0.337 5.337 9 C -0.033 4.033 10 C -0.164 4.164 11 C -0.141 4.141 12 C 0.044 3.956 13 C -0.154 4.154 14 C -0.033 4.033 15 N -0.333 5.333 16 C 0.020 3.980 17 C 0.002 3.998 18 C -0.589 4.589 19 H 0.089 0.911 20 C -0.202 4.202 21 N -0.574 5.574 22 Si 0.802 3.198 23 H -0.181 1.181 24 H -0.206 1.206 25 H -0.190 1.190 26 C 0.280 3.720 27 O -0.463 6.463 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.040 0.960 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.136 0.864 36 H 0.071 0.929 37 H 0.150 0.850 38 H 0.091 0.909 39 H 0.150 0.850 40 H 0.145 0.855 41 H 0.123 0.877 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.107 0.893 46 H 0.002 0.998 47 H -0.024 1.024 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.120 19.668 12.359 26.678 hybrid contribution 0.482 -1.344 -1.226 1.883 sum -12.638 18.324 11.132 24.888 Atomic orbital electron populations 1.23113 0.78303 1.04026 1.01864 1.88100 1.22397 1.26685 1.95121 1.21941 0.91916 0.87026 0.96781 0.85094 1.22249 1.03756 1.01868 0.94585 1.21026 0.87863 0.82944 0.78795 1.90791 1.66700 1.30889 1.53643 1.48388 1.15488 1.07501 1.62343 1.23006 0.97438 0.78413 1.04471 1.22863 0.93957 1.00374 0.99193 1.22587 1.01064 0.87308 1.03139 1.21292 0.82201 0.99437 0.92653 1.22963 1.04032 0.93273 0.95090 1.22451 0.95976 0.99879 0.84959 1.48559 1.38668 1.19479 1.26572 1.21360 0.89178 0.90731 0.96776 1.19011 0.95080 0.93061 0.92664 1.21544 0.94769 1.16080 1.26461 0.91101 1.26208 0.97934 0.99485 0.96613 1.70207 1.18737 1.34457 1.34003 0.85295 0.78145 0.77851 0.78466 1.18119 1.20615 1.18988 1.21683 0.83145 0.81948 0.85178 1.90608 1.60376 1.69573 1.25725 0.91484 0.89330 0.91921 0.88886 0.96023 0.88169 0.89047 0.86426 0.92902 0.85036 0.90943 0.85046 0.85466 0.87727 0.89068 0.92066 0.92498 0.89286 0.99842 1.02411 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.82 113.37 1.23 1.67 16 2 O -0.40 -13.20 9.91 -130.24 -1.29 -14.49 16 3 C 0.08 2.23 2.42 29.85 0.07 2.31 16 4 H 0.13 2.02 7.52 -2.39 -0.02 2.00 16 5 C -0.17 -4.27 9.37 71.98 0.67 -3.60 16 6 C 0.51 17.56 6.75 87.66 0.59 18.16 16 7 O -0.54 -25.73 12.59 15.69 0.20 -25.53 16 8 N -0.60 -15.99 2.85 -770.22 -2.20 -18.19 16 9 C 0.09 1.21 6.51 86.84 0.57 1.78 16 10 C -0.13 -1.79 7.09 32.07 0.23 -1.56 16 11 C -0.10 -1.81 5.86 31.60 0.19 -1.63 16 12 C 0.13 3.72 0.85 3.36 0.00 3.73 16 13 C -0.12 -2.68 5.91 31.45 0.19 -2.50 16 14 C 0.09 3.11 6.39 86.87 0.55 3.66 16 15 N -0.60 -26.60 2.74 -818.15 -2.24 -28.84 16 16 C 0.14 7.17 5.88 86.38 0.51 7.68 16 17 C 0.04 2.55 5.30 29.85 0.16 2.70 16 18 C -0.55 -35.25 9.11 25.60 0.23 -35.01 16 19 H 0.07 4.20 7.74 -2.91 -0.02 4.18 16 20 C 0.00 -0.29 5.46 84.66 0.46 0.17 16 21 N -0.93 -64.18 13.29 21.45 0.28 -63.89 16 22 Si 0.98 48.14 29.54 68.60 2.03 50.16 16 23 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 25 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 26 C 0.49 21.10 6.27 87.62 0.55 21.65 16 27 O -0.58 -29.83 17.42 -3.03 -0.05 -29.88 16 28 H 0.07 0.93 8.09 -2.38 -0.02 0.91 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 0.94 7.83 -2.39 -0.02 0.92 16 31 H 0.09 1.91 5.99 -2.39 -0.01 1.90 16 32 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 1.89 7.83 -2.39 -0.02 1.87 16 34 H 0.09 1.08 5.54 -2.39 -0.01 1.06 16 35 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 1.55 7.78 -2.39 -0.02 1.53 16 39 H 0.13 1.13 7.81 -2.38 -0.02 1.11 16 40 H 0.13 1.93 7.84 -2.38 -0.02 1.91 16 41 H 0.10 2.12 8.07 -2.39 -0.02 2.10 16 42 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.06 2.61 5.81 -2.39 -0.01 2.60 16 44 H 0.06 2.96 7.94 -2.39 -0.02 2.94 16 45 H 0.09 3.99 8.14 -2.39 -0.02 3.97 16 46 H -0.02 -1.18 8.14 -2.38 -0.02 -1.20 16 47 H -0.04 -3.17 8.14 -2.39 -0.02 -3.19 16 48 H 0.26 16.87 8.31 -92.71 -0.77 16.10 16 Total: -1.00 -102.58 381.01 3.87 -98.71 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.94 Total: 12.75 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 6.20 Total: 19.21 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -4.15 Total: -110.93 kcal Atomic # 8 Polarization: -68.76 SS G_CDS: -1.15 Total: -69.91 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.16 kcal Total: -102.58 3.87 -98.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269773723.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.505 kcal (2) G-P(sol) polarization free energy of solvation -102.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds