Wall clock time and date at job start Fri Apr 10 2020 18:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00452 * 2 1 4 4 H 1.09005 * 109.46712 * 29.99822 * 3 2 1 5 5 C 1.53005 * 109.46989 * 270.00269 * 3 2 1 6 6 C 1.50696 * 109.47270 * 149.99934 * 3 2 1 7 7 O 1.21276 * 120.00223 * 15.17791 * 6 3 2 8 8 N 1.34777 * 119.99993 * 195.17468 * 6 3 2 9 9 C 1.47660 * 125.81379 * 356.05787 * 8 6 3 10 10 C 1.54977 * 104.85552 * 204.00316 * 9 8 6 11 11 C 1.55333 * 101.66714 * 323.39635 * 10 9 8 12 12 C 1.46232 * 125.81548 * 176.05489 * 8 6 3 13 13 C 1.53904 * 110.87784 * 57.71998 * 12 8 6 14 14 C 1.54646 * 101.58725 * 263.47719 * 13 12 8 15 15 N 1.46850 * 105.50318 * 335.21440 * 14 13 12 16 16 C 1.46494 * 124.36767 * 196.88034 * 15 14 13 17 17 C 1.52997 * 109.47277 * 89.99884 * 16 15 14 18 18 C 1.50694 * 109.47345 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00317 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00280 * 180.27884 * 18 17 16 21 21 N 1.31514 * 120.00299 * 179.72506 * 20 18 17 22 22 Si 1.86803 * 119.99771 * 359.72448 * 20 18 17 23 23 H 1.48496 * 109.47076 * 90.00023 * 22 20 18 24 24 H 1.48492 * 109.47335 * 210.00002 * 22 20 18 25 25 H 1.48497 * 109.47227 * 330.00250 * 22 20 18 26 26 C 1.34658 * 111.25850 * 17.14936 * 15 14 13 27 27 O 1.21285 * 125.06969 * 178.87891 * 26 15 14 28 28 H 1.09007 * 109.47060 * 299.99947 * 1 2 3 29 29 H 1.08995 * 109.47005 * 59.99969 * 1 2 3 30 30 H 1.09001 * 109.47385 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47250 * 66.20918 * 5 3 2 32 32 H 1.08998 * 109.46959 * 186.21283 * 5 3 2 33 33 H 1.08999 * 109.46567 * 306.21028 * 5 3 2 34 34 H 1.09003 * 110.35916 * 322.84655 * 9 8 6 35 35 H 1.08997 * 110.36014 * 85.04815 * 9 8 6 36 36 H 1.08993 * 110.98840 * 81.49794 * 10 9 8 37 37 H 1.08999 * 110.98713 * 205.27029 * 10 9 8 38 38 H 1.08994 * 110.76596 * 276.58645 * 11 10 9 39 39 H 1.08997 * 110.75635 * 153.20048 * 11 10 9 40 40 H 1.08994 * 111.00828 * 145.40244 * 13 12 8 41 41 H 1.09002 * 111.03386 * 21.56233 * 13 12 8 42 42 H 1.09002 * 110.24058 * 216.20709 * 14 13 12 43 43 H 1.08998 * 110.23776 * 94.22291 * 14 13 12 44 44 H 1.09003 * 109.47118 * 330.00098 * 16 15 14 45 45 H 1.09003 * 109.47133 * 210.00478 * 16 15 14 46 46 H 1.09003 * 109.46872 * 60.00063 * 17 16 15 47 47 H 1.09003 * 109.47523 * 300.00355 * 17 16 15 48 48 H 0.97006 * 119.99752 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7713 -1.4426 6 6 3.3387 1.2637 0.7104 7 8 3.8774 0.1990 0.9271 8 7 3.9281 2.4098 1.1049 9 6 3.4306 3.7740 0.8370 10 6 4.6865 4.6782 0.9191 11 6 5.4841 4.0044 2.0692 12 6 5.1692 2.5140 1.8711 13 6 6.3276 1.8162 1.1365 14 6 6.3405 0.4302 1.8224 15 7 5.7396 0.6416 3.1456 16 6 5.8601 -0.2929 4.2673 17 6 7.0990 0.0586 5.0932 18 6 7.2226 -0.9023 6.2475 19 1 6.4909 -1.6857 6.3786 20 6 8.2669 -0.7782 7.1392 21 7 8.3717 -1.6135 8.1496 22 14 9.5329 0.5765 6.9120 23 1 9.0926 1.7929 7.6411 24 1 10.8423 0.1252 7.4477 25 1 9.6703 0.8883 5.4667 26 6 5.0589 1.8024 3.1929 27 8 4.4500 2.2144 4.1576 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.2490 1.9074 -1.9232 32 1 2.7604 2.7166 -1.4446 33 1 2.7916 1.0217 -1.9874 34 1 2.9887 3.8280 -0.1580 35 1 2.7006 4.0665 1.5918 36 1 5.2488 4.6510 -0.0142 37 1 4.4147 5.7013 1.1790 38 1 5.1278 4.3489 3.0400 39 1 6.5523 4.1916 1.9598 40 1 7.2680 2.3422 1.3010 41 1 6.1157 1.7230 0.0713 42 1 7.3641 0.0703 1.9262 43 1 5.7465 -0.2804 1.2477 44 1 5.9547 -1.3093 3.8849 45 1 4.9723 -0.2225 4.8958 46 1 7.0044 1.0750 5.4756 47 1 7.9868 -0.0119 4.4647 48 1 9.1062 -1.5258 8.7771 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269773724.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:18 Heat of formation + Delta-G solvation = -94.766189 kcal Electronic energy + Delta-G solvation = -29633.348044 eV Core-core repulsion = 25689.125513 eV Total energy + Delta-G solvation = -3944.222531 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.48838 -39.38867 -37.85050 -37.09367 -35.92596 -33.71908 -32.73687 -31.77420 -31.11312 -29.48509 -27.91202 -27.12496 -25.43290 -24.90505 -23.65821 -22.56932 -21.44840 -21.03337 -19.72651 -18.64908 -17.56309 -16.97020 -16.91130 -16.29904 -15.97767 -15.70885 -15.60651 -15.26648 -14.65480 -14.45203 -14.09837 -13.94159 -13.67321 -13.60203 -13.36735 -13.18118 -13.00817 -12.80327 -12.73356 -12.62828 -12.31181 -12.29716 -12.12036 -11.70907 -11.53546 -11.52799 -11.42204 -11.08468 -10.94984 -10.77978 -10.39314 -10.23272 -10.09635 -9.77513 -9.68695 -9.58174 -9.22063 -8.63794 -8.50832 -7.95850 -6.01766 -4.00145 2.19337 2.44369 3.11016 3.34151 3.40157 3.44134 3.51063 3.69735 4.03632 4.20315 4.37492 4.41235 4.48140 4.50672 4.63191 4.67869 4.77169 4.93513 4.94385 5.01962 5.06311 5.18115 5.22049 5.27323 5.32344 5.35409 5.39166 5.46607 5.54363 5.62919 5.69859 5.77092 5.88119 5.90669 6.07552 6.14762 6.24365 6.47503 6.69244 6.71640 6.93565 7.23499 7.27461 7.39822 7.75243 7.80992 8.04521 8.53116 8.64873 9.02105 9.60140 11.11473 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017390 B = 0.003665 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.736683 B = 7637.553602 C = 8551.363250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.077 3.923 4 H 0.083 0.917 5 C -0.172 4.172 6 C 0.526 3.474 7 O -0.495 6.495 8 N -0.597 5.597 9 C 0.092 3.908 10 C -0.128 4.128 11 C -0.115 4.115 12 C 0.133 3.867 13 C -0.134 4.134 14 C 0.096 3.904 15 N -0.593 5.593 16 C 0.139 3.861 17 C -0.023 4.023 18 C -0.519 4.519 19 H 0.074 0.926 20 C 0.069 3.931 21 N -0.902 5.902 22 Si 0.881 3.119 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.267 1.267 26 C 0.512 3.488 27 O -0.531 6.531 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.015 0.985 47 H 0.017 0.983 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.336 14.041 -24.416 30.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.276 6.276 3 C 0.016 3.984 4 H 0.101 0.899 5 C -0.229 4.229 6 C 0.314 3.686 7 O -0.367 6.367 8 N -0.335 5.335 9 C -0.030 4.030 10 C -0.166 4.166 11 C -0.153 4.153 12 C 0.044 3.956 13 C -0.172 4.172 14 C -0.027 4.027 15 N -0.325 5.325 16 C 0.018 3.982 17 C -0.061 4.061 18 C -0.557 4.557 19 H 0.092 0.908 20 C -0.132 4.132 21 N -0.541 5.541 22 Si 0.709 3.291 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.191 1.191 26 C 0.296 3.704 27 O -0.408 6.408 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.114 0.886 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.033 0.967 47 H 0.035 0.965 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.187 13.245 -23.587 29.670 hybrid contribution 0.482 0.850 0.077 0.980 sum -11.706 14.095 -23.510 29.807 Atomic orbital electron populations 1.22893 0.80464 1.03425 0.99978 1.88067 1.19754 1.24870 1.94899 1.21830 0.93039 0.86988 0.96590 0.89929 1.22288 1.03356 1.02336 0.94927 1.20113 0.86436 0.82946 0.79149 1.90704 1.63416 1.28683 1.53943 1.48203 1.24558 1.06102 1.54670 1.22619 0.97593 0.81263 1.01560 1.22796 0.95556 0.98994 0.99208 1.22585 1.01730 0.90539 1.00490 1.21144 0.85835 0.97367 0.91205 1.22916 0.97494 0.96466 1.00354 1.22328 0.99076 0.97507 0.83777 1.48453 1.50438 1.20648 1.12936 1.21554 1.00584 0.90714 0.85310 1.19888 0.93194 0.97445 0.95556 1.20979 1.11632 1.14648 1.08486 0.90791 1.24976 0.97634 0.95841 0.94778 1.69913 1.32061 1.37342 1.14740 0.86753 0.80921 0.82605 0.78870 1.20252 1.21345 1.19146 1.20437 0.79320 0.82179 0.88512 1.90677 1.43570 1.69470 1.37075 0.93756 0.93861 0.88978 0.91167 0.90737 0.90708 0.89931 0.90747 0.90198 0.89289 0.89037 0.89096 0.89339 0.89409 0.90937 0.88563 0.90914 0.90838 0.96696 0.96466 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.33 16 2 O -0.36 -4.41 9.93 -54.67 -0.54 -4.96 16 3 C 0.08 0.78 2.49 -27.88 -0.07 0.71 16 4 H 0.08 0.68 7.57 -51.93 -0.39 0.29 16 5 C -0.17 -1.17 9.35 37.16 0.35 -0.82 16 6 C 0.53 7.21 6.74 -10.99 -0.07 7.13 16 7 O -0.49 -8.73 12.56 -13.88 -0.17 -8.91 16 8 N -0.60 -7.16 2.85 -157.38 -0.45 -7.60 16 9 C 0.09 0.70 6.47 -2.36 -0.02 0.68 16 10 C -0.13 -0.84 7.09 -24.45 -0.17 -1.01 16 11 C -0.12 -1.21 6.06 -25.18 -0.15 -1.37 16 12 C 0.13 1.83 0.85 -132.41 -0.11 1.72 16 13 C -0.13 -1.66 5.97 -25.39 -0.15 -1.81 16 14 C 0.10 1.54 6.39 -2.99 -0.02 1.53 16 15 N -0.59 -11.87 2.79 -172.50 -0.48 -12.35 16 16 C 0.14 3.18 5.89 -4.05 -0.02 3.16 16 17 C -0.02 -0.58 4.37 -27.89 -0.12 -0.70 16 18 C -0.52 -15.52 9.66 -34.44 -0.33 -15.85 16 19 H 0.07 2.35 7.99 -52.49 -0.42 1.93 16 20 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 21 N -0.90 -28.62 13.96 55.43 0.77 -27.85 16 22 Si 0.88 22.64 27.46 -169.99 -4.67 17.98 16 23 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.27 -6.58 6.55 56.52 0.37 -6.21 16 26 C 0.51 10.03 6.51 -11.13 -0.07 9.96 16 27 O -0.53 -12.31 17.07 5.55 0.09 -12.22 16 28 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 29 H 0.04 0.25 8.02 -51.93 -0.42 -0.17 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.35 8.02 -51.93 -0.42 -0.06 16 32 H 0.07 0.38 5.74 -51.93 -0.30 0.08 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.40 5.44 -51.93 -0.28 0.11 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.09 1.14 7.52 -51.93 -0.39 0.75 16 39 H 0.09 0.82 7.39 -51.93 -0.38 0.44 16 40 H 0.09 0.95 7.45 -51.93 -0.39 0.56 16 41 H 0.09 0.95 8.07 -51.93 -0.42 0.53 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.10 1.63 5.69 -51.93 -0.30 1.34 16 44 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 45 H 0.07 1.81 7.92 -51.93 -0.41 1.40 16 46 H 0.01 0.40 7.56 -51.93 -0.39 0.01 16 47 H 0.02 0.43 7.21 -51.93 -0.37 0.06 16 48 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 376.50 15.07 5.67 5.67 Total: -1.00 -38.64 376.50 -7.58 -46.22 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -7.83 Total: -2.63 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 0.02 Total: 6.64 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -0.16 Total: -47.80 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.62 Total: -26.08 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.67 Total: 17.98 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.64 -7.58 -46.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269773724.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.548 kcal (2) G-P(sol) polarization free energy of solvation -38.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds