Wall clock time and date at job start Fri Apr 10 2020 18:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00452 * 2 1 4 4 H 1.09005 * 109.46712 * 29.99822 * 3 2 1 5 5 C 1.53005 * 109.46989 * 270.00269 * 3 2 1 6 6 C 1.50696 * 109.47270 * 149.99934 * 3 2 1 7 7 O 1.21276 * 120.00223 * 15.17791 * 6 3 2 8 8 N 1.34777 * 119.99993 * 195.17468 * 6 3 2 9 9 C 1.47660 * 125.81379 * 356.05787 * 8 6 3 10 10 C 1.54977 * 104.85552 * 204.00316 * 9 8 6 11 11 C 1.55333 * 101.66714 * 323.39635 * 10 9 8 12 12 C 1.46232 * 125.81548 * 176.05489 * 8 6 3 13 13 C 1.53904 * 110.87784 * 57.71998 * 12 8 6 14 14 C 1.54646 * 101.58725 * 263.47719 * 13 12 8 15 15 N 1.46850 * 105.50318 * 335.21440 * 14 13 12 16 16 C 1.46494 * 124.36767 * 196.88034 * 15 14 13 17 17 C 1.52997 * 109.47277 * 89.99884 * 16 15 14 18 18 C 1.50694 * 109.47345 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00317 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00280 * 180.27884 * 18 17 16 21 21 N 1.31514 * 120.00299 * 179.72506 * 20 18 17 22 22 Si 1.86803 * 119.99771 * 359.72448 * 20 18 17 23 23 H 1.48496 * 109.47076 * 90.00023 * 22 20 18 24 24 H 1.48492 * 109.47335 * 210.00002 * 22 20 18 25 25 H 1.48497 * 109.47227 * 330.00250 * 22 20 18 26 26 C 1.34658 * 111.25850 * 17.14936 * 15 14 13 27 27 O 1.21285 * 125.06969 * 178.87891 * 26 15 14 28 28 H 1.09007 * 109.47060 * 299.99947 * 1 2 3 29 29 H 1.08995 * 109.47005 * 59.99969 * 1 2 3 30 30 H 1.09001 * 109.47385 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47250 * 66.20918 * 5 3 2 32 32 H 1.08998 * 109.46959 * 186.21283 * 5 3 2 33 33 H 1.08999 * 109.46567 * 306.21028 * 5 3 2 34 34 H 1.09003 * 110.35916 * 322.84655 * 9 8 6 35 35 H 1.08997 * 110.36014 * 85.04815 * 9 8 6 36 36 H 1.08993 * 110.98840 * 81.49794 * 10 9 8 37 37 H 1.08999 * 110.98713 * 205.27029 * 10 9 8 38 38 H 1.08994 * 110.76596 * 276.58645 * 11 10 9 39 39 H 1.08997 * 110.75635 * 153.20048 * 11 10 9 40 40 H 1.08994 * 111.00828 * 145.40244 * 13 12 8 41 41 H 1.09002 * 111.03386 * 21.56233 * 13 12 8 42 42 H 1.09002 * 110.24058 * 216.20709 * 14 13 12 43 43 H 1.08998 * 110.23776 * 94.22291 * 14 13 12 44 44 H 1.09003 * 109.47118 * 330.00098 * 16 15 14 45 45 H 1.09003 * 109.47133 * 210.00478 * 16 15 14 46 46 H 1.09003 * 109.46872 * 60.00063 * 17 16 15 47 47 H 1.09003 * 109.47523 * 300.00355 * 17 16 15 48 48 H 0.97006 * 119.99752 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7713 -1.4426 6 6 3.3387 1.2637 0.7104 7 8 3.8774 0.1990 0.9271 8 7 3.9281 2.4098 1.1049 9 6 3.4306 3.7740 0.8370 10 6 4.6865 4.6782 0.9191 11 6 5.4841 4.0044 2.0692 12 6 5.1692 2.5140 1.8711 13 6 6.3276 1.8162 1.1365 14 6 6.3405 0.4302 1.8224 15 7 5.7396 0.6416 3.1456 16 6 5.8601 -0.2929 4.2673 17 6 7.0990 0.0586 5.0932 18 6 7.2226 -0.9023 6.2475 19 1 6.4909 -1.6857 6.3786 20 6 8.2669 -0.7782 7.1392 21 7 8.3717 -1.6135 8.1496 22 14 9.5329 0.5765 6.9120 23 1 9.0926 1.7929 7.6411 24 1 10.8423 0.1252 7.4477 25 1 9.6703 0.8883 5.4667 26 6 5.0589 1.8024 3.1929 27 8 4.4500 2.2144 4.1576 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.2490 1.9074 -1.9232 32 1 2.7604 2.7166 -1.4446 33 1 2.7916 1.0217 -1.9874 34 1 2.9887 3.8280 -0.1580 35 1 2.7006 4.0665 1.5918 36 1 5.2488 4.6510 -0.0142 37 1 4.4147 5.7013 1.1790 38 1 5.1278 4.3489 3.0400 39 1 6.5523 4.1916 1.9598 40 1 7.2680 2.3422 1.3010 41 1 6.1157 1.7230 0.0713 42 1 7.3641 0.0703 1.9262 43 1 5.7465 -0.2804 1.2477 44 1 5.9547 -1.3093 3.8849 45 1 4.9723 -0.2225 4.8958 46 1 7.0044 1.0750 5.4756 47 1 7.9868 -0.0119 4.4647 48 1 9.1062 -1.5258 8.7771 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269773724.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:17 Heat of formation + Delta-G solvation = -122.705487 kcal Electronic energy + Delta-G solvation = -29634.559583 eV Core-core repulsion = 25689.125513 eV Total energy + Delta-G solvation = -3945.434070 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.59399 -40.48652 -38.85766 -38.06323 -37.50370 -35.62625 -34.05288 -33.20700 -31.83988 -31.08779 -29.03402 -27.75193 -27.14673 -25.92777 -24.67597 -23.46184 -23.13109 -22.01117 -21.15276 -19.87361 -19.12207 -18.52571 -17.75737 -17.32235 -17.21338 -16.90211 -16.63989 -16.35888 -16.24725 -15.79635 -15.46587 -15.08606 -14.81555 -14.72604 -14.58784 -14.50974 -14.29626 -13.97970 -13.78264 -13.61103 -13.49251 -13.29778 -13.09895 -12.98560 -12.76903 -12.52817 -12.42186 -12.33529 -12.15363 -12.09503 -11.83842 -11.81530 -11.62453 -11.53701 -11.05612 -11.04268 -10.85342 -10.52018 -9.73632 -9.58708 -8.37376 -6.43801 1.12035 1.29298 1.31966 1.43914 1.47072 1.86923 2.09266 2.29769 2.89507 2.96695 3.17068 3.26807 3.52252 3.58989 3.76818 3.84991 4.00808 4.02874 4.11518 4.17320 4.20132 4.40231 4.40809 4.47849 4.49999 4.55989 4.60563 4.68614 4.74167 4.75967 4.81179 4.82719 4.87487 4.93485 5.03169 5.08758 5.14135 5.17616 5.21446 5.27084 5.33661 5.42345 5.65062 6.02856 6.15037 6.21095 6.38293 6.61262 7.07095 7.09474 7.21066 8.79289 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017390 B = 0.003665 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.736683 B = 7637.553602 C = 8551.363250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.077 3.923 4 H 0.102 0.898 5 C -0.162 4.162 6 C 0.513 3.487 7 O -0.548 6.548 8 N -0.596 5.596 9 C 0.082 3.918 10 C -0.111 4.111 11 C -0.118 4.118 12 C 0.136 3.864 13 C -0.118 4.118 14 C 0.089 3.911 15 N -0.603 5.603 16 C 0.149 3.851 17 C -0.006 4.006 18 C -0.539 4.539 19 H 0.033 0.967 20 C 0.010 3.990 21 N -0.945 5.945 22 Si 0.954 3.046 23 H -0.272 1.272 24 H -0.273 1.273 25 H -0.246 1.246 26 C 0.494 3.506 27 O -0.582 6.582 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.120 0.880 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.065 0.935 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.042 0.958 46 H 0.004 0.996 47 H 0.031 0.969 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.621 17.769 -28.082 35.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C 0.016 3.984 4 H 0.120 0.880 5 C -0.219 4.219 6 C 0.302 3.698 7 O -0.424 6.424 8 N -0.333 5.333 9 C -0.038 4.038 10 C -0.148 4.148 11 C -0.156 4.156 12 C 0.047 3.953 13 C -0.156 4.156 14 C -0.032 4.032 15 N -0.334 5.334 16 C 0.027 3.973 17 C -0.044 4.044 18 C -0.577 4.577 19 H 0.051 0.949 20 C -0.188 4.188 21 N -0.585 5.585 22 Si 0.777 3.223 23 H -0.197 1.197 24 H -0.198 1.198 25 H -0.169 1.169 26 C 0.281 3.719 27 O -0.462 6.462 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.138 0.862 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.084 0.916 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.061 0.939 46 H 0.022 0.978 47 H 0.050 0.950 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.493 17.008 -27.309 34.164 hybrid contribution 0.124 -0.435 1.313 1.389 sum -11.369 16.573 -25.996 32.859 Atomic orbital electron populations 1.23071 0.78623 1.04097 1.01413 1.88013 1.21930 1.26612 1.95220 1.22024 0.91176 0.86672 0.98530 0.88003 1.22263 1.04813 1.02664 0.92143 1.20984 0.87455 0.82625 0.78735 1.90676 1.64892 1.30676 1.56175 1.48399 1.24016 1.07564 1.53297 1.22998 0.98387 0.78910 1.03518 1.22856 0.94128 0.99377 0.98481 1.22656 1.03635 0.88248 1.01049 1.21181 0.87419 0.98802 0.87937 1.22971 0.98111 0.93617 1.00945 1.22533 0.98699 1.00117 0.81896 1.48567 1.51061 1.20403 1.13350 1.21100 0.98089 0.91894 0.86255 1.19671 0.94797 0.95422 0.94516 1.21242 1.11168 1.14780 1.10547 0.94871 1.25991 1.00058 0.98665 0.94095 1.70054 1.33266 1.39385 1.15787 0.85607 0.77911 0.78716 0.80111 1.19719 1.19813 1.16894 1.21677 0.77864 0.82042 0.90351 1.90625 1.45343 1.70639 1.39556 0.93594 0.91013 0.88893 0.88815 0.88418 0.92229 0.86195 0.91141 0.87539 0.86881 0.91640 0.87091 0.86768 0.87064 0.90208 0.89746 0.90719 0.93942 0.97807 0.95037 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.82 113.37 1.23 1.58 16 2 O -0.40 -9.70 9.93 -130.40 -1.29 -10.99 16 3 C 0.08 1.43 2.49 29.85 0.07 1.50 16 4 H 0.10 1.43 7.57 -2.38 -0.02 1.41 16 5 C -0.16 -1.64 9.35 71.98 0.67 -0.96 16 6 C 0.51 13.64 6.74 87.66 0.59 14.23 16 7 O -0.55 -19.82 12.56 15.57 0.20 -19.63 16 8 N -0.60 -13.06 2.85 -770.21 -2.19 -15.26 16 9 C 0.08 0.93 6.47 86.83 0.56 1.49 16 10 C -0.11 -0.90 7.09 32.07 0.23 -0.67 16 11 C -0.12 -2.13 6.06 31.60 0.19 -1.94 16 12 C 0.14 3.51 0.85 3.36 0.00 3.51 16 13 C -0.12 -2.61 5.97 31.46 0.19 -2.43 16 14 C 0.09 2.84 6.39 86.87 0.56 3.39 16 15 N -0.60 -24.85 2.79 -818.11 -2.28 -27.13 16 16 C 0.15 7.24 5.89 86.38 0.51 7.75 16 17 C -0.01 -0.30 4.37 29.85 0.13 -0.17 16 18 C -0.54 -33.71 9.66 25.60 0.25 -33.46 16 19 H 0.03 2.26 7.99 -2.91 -0.02 2.24 16 20 C 0.01 0.59 5.47 84.66 0.46 1.05 16 21 N -0.95 -61.68 13.96 21.45 0.30 -61.39 16 22 Si 0.95 46.63 27.46 68.60 1.88 48.51 16 23 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.25 -11.08 6.55 99.48 0.65 -10.43 16 26 C 0.49 19.81 6.51 87.62 0.57 20.38 16 27 O -0.58 -28.30 17.07 -3.05 -0.05 -28.35 16 28 H 0.05 0.65 8.09 -2.38 -0.02 0.63 16 29 H 0.07 0.64 8.02 -2.39 -0.02 0.62 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 0.53 8.02 -2.39 -0.02 0.51 16 32 H 0.10 0.50 5.74 -2.39 -0.01 0.49 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.12 0.47 5.44 -2.39 -0.01 0.46 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.06 1.56 7.52 -2.39 -0.02 1.54 16 39 H 0.11 1.55 7.39 -2.39 -0.02 1.53 16 40 H 0.11 1.95 7.45 -2.39 -0.02 1.93 16 41 H 0.11 1.98 8.07 -2.39 -0.02 1.96 16 42 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.08 2.93 5.69 -2.39 -0.01 2.92 16 44 H 0.07 3.52 8.14 -2.39 -0.02 3.50 16 45 H 0.04 2.28 7.92 -2.39 -0.02 2.26 16 46 H 0.00 0.20 7.56 -2.39 -0.02 0.18 16 47 H 0.03 1.57 7.21 -2.39 -0.02 1.55 16 48 H 0.27 16.25 8.31 -92.70 -0.77 15.48 16 Total: -1.00 -92.03 376.50 3.66 -88.37 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.89 Total: 10.61 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 6.21 Total: 15.25 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -4.18 Total: -103.78 kcal Atomic # 8 Polarization: -57.81 SS G_CDS: -1.15 Total: -58.96 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.88 Total: 48.51 kcal Total: -92.03 3.66 -88.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269773724.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.338 kcal (2) G-P(sol) polarization free energy of solvation -92.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds