Wall clock time and date at job start Fri Apr 10 2020 18:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99759 * 2 1 4 4 H 1.09000 * 109.46953 * 330.00103 * 3 2 1 5 5 C 1.53005 * 109.47315 * 90.00073 * 3 2 1 6 6 C 1.50700 * 109.47258 * 209.99867 * 3 2 1 7 7 O 1.21284 * 119.99618 * 350.77369 * 6 3 2 8 8 N 1.34777 * 120.00159 * 170.77026 * 6 3 2 9 9 C 1.47649 * 125.81310 * 354.25549 * 8 6 3 10 10 C 1.54979 * 104.85679 * 156.01216 * 9 8 6 11 11 C 1.55323 * 101.66723 * 36.60237 * 10 9 8 12 12 C 1.46227 * 125.81186 * 174.26932 * 8 6 3 13 13 C 1.53893 * 110.91074 * 60.14044 * 12 8 6 14 14 C 1.54650 * 101.59248 * 263.45898 * 13 12 8 15 15 N 1.46848 * 105.50176 * 335.23060 * 14 13 12 16 16 C 1.46504 * 124.36496 * 196.85772 * 15 14 13 17 17 C 1.52995 * 109.47125 * 89.99666 * 16 15 14 18 18 C 1.50702 * 109.46767 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00567 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99886 * 180.27677 * 18 17 16 21 21 N 1.31518 * 120.00204 * 359.72305 * 20 18 17 22 22 Si 1.86806 * 120.00207 * 179.72465 * 20 18 17 23 23 H 1.48499 * 109.46824 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46838 * 119.99680 * 22 20 18 25 25 H 1.48492 * 109.47220 * 239.99845 * 22 20 18 26 26 C 1.34649 * 111.26949 * 17.11935 * 15 14 13 27 27 O 1.21284 * 125.07612 * 178.88074 * 26 15 14 28 28 H 1.09000 * 109.46821 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47397 * 299.99894 * 1 2 3 30 30 H 1.08994 * 109.47008 * 60.00265 * 1 2 3 31 31 H 1.08995 * 109.47047 * 174.75498 * 5 3 2 32 32 H 1.09002 * 109.46447 * 294.75463 * 5 3 2 33 33 H 1.09000 * 109.47179 * 54.74971 * 5 3 2 34 34 H 1.08994 * 110.36582 * 37.16513 * 9 8 6 35 35 H 1.09004 * 110.44833 * 274.90163 * 9 8 6 36 36 H 1.08999 * 110.98579 * 278.51313 * 10 9 8 37 37 H 1.08997 * 110.98791 * 154.69643 * 10 9 8 38 38 H 1.08997 * 110.76455 * 206.79462 * 11 10 9 39 39 H 1.09000 * 110.91995 * 83.47746 * 11 10 9 40 40 H 1.08996 * 111.00532 * 145.38599 * 13 12 8 41 41 H 1.08995 * 111.03318 * 21.54800 * 13 12 8 42 42 H 1.08991 * 110.24245 * 216.21996 * 14 13 12 43 43 H 1.08998 * 110.23738 * 94.23455 * 14 13 12 44 44 H 1.09002 * 109.46950 * 329.99134 * 16 15 14 45 45 H 1.08995 * 109.46851 * 209.99909 * 16 15 14 46 46 H 1.08995 * 109.47323 * 60.00119 * 17 16 15 47 47 H 1.08995 * 109.47454 * 299.99874 * 17 16 15 48 48 H 0.96997 * 120.00626 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3386 1.2640 -0.7104 7 8 3.8259 0.1983 -1.0231 8 7 3.9850 2.4110 -0.9982 9 6 3.4604 3.7749 -0.7867 10 6 4.7192 4.6715 -0.6718 11 6 5.6730 4.0075 -1.7023 12 6 5.3253 2.5168 -1.5732 13 6 5.3879 1.8317 -2.9499 14 6 5.9535 0.4408 -2.5794 15 7 6.6915 0.6385 -1.3254 16 6 7.6762 -0.3038 -0.7880 17 6 9.0651 0.0492 -1.3239 18 6 10.0779 -0.9205 -0.7716 19 1 9.7625 -1.7098 -0.1054 20 6 11.4080 -0.7969 -1.1128 21 7 11.7922 0.1640 -1.9245 22 14 12.6647 -1.9941 -0.4221 23 1 11.9817 -2.9748 0.4593 24 1 13.3299 -2.7123 -1.5388 25 1 13.6812 -1.2474 0.3615 26 6 6.3422 1.7947 -0.7301 27 8 6.7828 2.1956 0.3263 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.7451 2.7253 1.4439 32 1 1.2493 1.8910 1.9284 33 1 2.8062 1.0299 1.9828 34 1 2.8781 3.8189 0.1336 35 1 2.8506 4.0842 -1.6356 36 1 5.1391 4.6279 0.3332 37 1 4.4934 5.6996 -0.9547 38 1 6.7146 4.1859 -1.4356 39 1 5.4669 4.3663 -2.7108 40 1 6.0641 2.3625 -3.6200 41 1 4.3942 1.7450 -3.3892 42 1 6.6258 0.0868 -3.3608 43 1 5.1402 -0.2694 -2.4304 44 1 7.4149 -1.3166 -1.0946 45 1 7.6805 -0.2434 0.3003 46 1 9.3263 1.0619 -1.0173 47 1 9.0607 -0.0111 -2.4122 48 1 12.7279 0.2508 -2.1649 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269773725.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:19 Heat of formation + Delta-G solvation = -125.296721 kcal Electronic energy + Delta-G solvation = -29611.430380 eV Core-core repulsion = 25665.883945 eV Total energy + Delta-G solvation = -3945.546435 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.57402 -40.45078 -38.79548 -38.03796 -37.46087 -35.65927 -33.98792 -33.12771 -31.80323 -30.79670 -28.98300 -27.71367 -27.04826 -25.93640 -24.73928 -23.68252 -23.06128 -22.23822 -21.03230 -19.81914 -18.76609 -18.47546 -17.87105 -17.40793 -17.21943 -16.76826 -16.44521 -16.35684 -16.07979 -15.93546 -15.44079 -14.96967 -14.82660 -14.60596 -14.52369 -14.40063 -14.29588 -13.90642 -13.79799 -13.45062 -13.40553 -13.34640 -13.26546 -12.91406 -12.78230 -12.64473 -12.44341 -12.18163 -12.09156 -12.03217 -11.99265 -11.88115 -11.75175 -11.44873 -11.00457 -10.93473 -10.64744 -10.51037 -9.70970 -9.53644 -8.27828 -6.41168 1.17424 1.35622 1.37374 1.47744 1.51216 1.89440 2.13046 2.38611 2.92521 3.04820 3.18030 3.29677 3.51130 3.58110 3.77391 3.85366 3.96742 4.01834 4.16514 4.18654 4.22654 4.42802 4.46732 4.50952 4.55022 4.56411 4.60808 4.70176 4.72156 4.76070 4.77349 4.87221 4.89174 4.92005 5.04090 5.11372 5.14379 5.24332 5.27464 5.32685 5.39345 5.53517 5.75367 6.07294 6.10364 6.25985 6.41404 6.72140 7.09037 7.14449 7.28282 8.84686 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.003422 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.831488 B = 8181.295976 C = 8968.064871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.399 6.399 3 C 0.084 3.916 4 H 0.127 0.873 5 C -0.170 4.170 6 C 0.511 3.489 7 O -0.549 6.549 8 N -0.596 5.596 9 C 0.089 3.911 10 C -0.125 4.125 11 C -0.111 4.111 12 C 0.138 3.862 13 C -0.120 4.120 14 C 0.093 3.907 15 N -0.603 5.603 16 C 0.144 3.856 17 C 0.032 3.968 18 C -0.549 4.549 19 H 0.061 0.939 20 C 0.003 3.997 21 N -0.929 5.929 22 Si 0.973 3.027 23 H -0.263 1.263 24 H -0.270 1.270 25 H -0.277 1.277 26 C 0.495 3.505 27 O -0.581 6.581 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.037 0.963 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.055 0.945 37 H 0.128 0.872 38 H 0.060 0.940 39 H 0.126 0.874 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.044 0.956 46 H -0.022 1.022 47 H 0.002 0.998 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.112 11.577 -1.700 30.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C 0.023 3.977 4 H 0.145 0.855 5 C -0.227 4.227 6 C 0.301 3.699 7 O -0.426 6.426 8 N -0.333 5.333 9 C -0.031 4.031 10 C -0.163 4.163 11 C -0.149 4.149 12 C 0.049 3.951 13 C -0.159 4.159 14 C -0.029 4.029 15 N -0.333 5.333 16 C 0.022 3.978 17 C -0.006 4.006 18 C -0.588 4.588 19 H 0.079 0.921 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.797 3.203 23 H -0.187 1.187 24 H -0.195 1.195 25 H -0.202 1.202 26 C 0.282 3.718 27 O -0.461 6.461 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.056 0.944 34 H 0.119 0.881 35 H 0.135 0.865 36 H 0.074 0.926 37 H 0.147 0.853 38 H 0.079 0.921 39 H 0.144 0.856 40 H 0.126 0.874 41 H 0.132 0.868 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.063 0.937 46 H -0.003 1.003 47 H 0.020 0.980 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -27.399 10.935 -1.361 29.532 hybrid contribution 1.340 -0.840 0.538 1.670 sum -26.059 10.095 -0.823 27.958 Atomic orbital electron populations 1.23101 0.78348 1.04123 1.01720 1.88042 1.22214 1.26332 1.95137 1.21923 0.91561 0.87192 0.97009 0.85545 1.22295 1.04440 1.01851 0.94106 1.21025 0.87605 0.82619 0.78696 1.90685 1.68371 1.30698 1.52805 1.48391 1.14274 1.07625 1.62965 1.23011 0.97244 0.78352 1.04524 1.22862 0.93850 1.00841 0.98752 1.22592 1.00661 0.88381 1.03245 1.21155 0.82591 0.98586 0.92810 1.22948 1.04169 0.93745 0.95003 1.22446 0.95850 1.00062 0.84540 1.48550 1.39492 1.20739 1.24567 1.21293 0.87934 0.91641 0.96902 1.19143 0.91219 0.95002 0.95263 1.21528 0.93415 1.14409 1.29407 0.92106 1.26018 1.00782 0.97592 0.95147 1.70109 1.17314 1.33544 1.35907 0.85283 0.78103 0.78488 0.78463 1.18713 1.19535 1.20223 1.21606 0.82696 0.81972 0.85522 1.90609 1.60076 1.70901 1.24549 0.88993 0.91901 0.92056 0.89649 0.88027 0.94384 0.88120 0.86543 0.92564 0.85340 0.92137 0.85572 0.87397 0.86793 0.91039 0.89621 0.90646 0.93737 1.00345 0.97981 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.82 113.37 1.23 1.51 16 2 O -0.40 -9.33 9.90 -130.11 -1.29 -10.62 16 3 C 0.08 1.59 2.45 29.85 0.07 1.66 16 4 H 0.13 1.23 7.62 -2.39 -0.02 1.21 16 5 C -0.17 -2.85 9.31 71.98 0.67 -2.18 16 6 C 0.51 14.13 6.76 87.66 0.59 14.72 16 7 O -0.55 -20.59 12.57 15.83 0.20 -20.39 16 8 N -0.60 -13.81 2.85 -770.21 -2.19 -16.01 16 9 C 0.09 1.06 6.48 86.84 0.56 1.62 16 10 C -0.13 -1.85 7.09 32.07 0.23 -1.62 16 11 C -0.11 -2.33 5.87 31.60 0.19 -2.14 16 12 C 0.14 3.92 0.85 3.37 0.00 3.92 16 13 C -0.12 -3.06 5.90 31.46 0.19 -2.87 16 14 C 0.09 3.27 6.39 86.88 0.56 3.82 16 15 N -0.60 -26.84 2.75 -818.10 -2.25 -29.10 16 16 C 0.14 7.39 5.88 86.38 0.51 7.90 16 17 C 0.03 1.88 5.30 29.85 0.16 2.04 16 18 C -0.55 -33.90 9.11 25.60 0.23 -33.66 16 19 H 0.06 3.62 7.74 -2.91 -0.02 3.60 16 20 C 0.00 0.18 5.46 84.65 0.46 0.64 16 21 N -0.93 -59.00 13.29 21.45 0.28 -58.71 16 22 Si 0.97 46.57 29.54 68.60 2.03 48.59 16 23 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 26 C 0.50 21.30 6.27 87.63 0.55 21.85 16 27 O -0.58 -29.74 17.43 -3.04 -0.05 -29.79 16 28 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 0.52 8.00 -2.39 -0.02 0.50 16 30 H 0.06 0.52 8.08 -2.39 -0.02 0.50 16 31 H 0.08 1.25 5.73 -2.39 -0.01 1.24 16 32 H 0.10 1.04 8.00 -2.39 -0.02 1.02 16 33 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.10 0.83 5.38 -2.39 -0.01 0.82 16 35 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 1.68 7.80 -2.39 -0.02 1.66 16 39 H 0.13 1.65 7.81 -2.39 -0.02 1.63 16 40 H 0.11 2.34 7.83 -2.39 -0.02 2.32 16 41 H 0.11 2.30 8.07 -2.39 -0.02 2.28 16 42 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.09 3.16 5.78 -2.39 -0.01 3.15 16 44 H 0.08 3.64 8.14 -2.39 -0.02 3.62 16 45 H 0.04 2.43 7.92 -2.39 -0.02 2.41 16 46 H -0.02 -1.46 8.14 -2.39 -0.02 -1.48 16 47 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 48 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -91.46 380.94 3.86 -87.60 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.94 Total: 11.22 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 6.19 Total: 17.21 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -4.16 Total: -103.82 kcal Atomic # 8 Polarization: -59.66 SS G_CDS: -1.14 Total: -60.80 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -91.46 3.86 -87.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269773725.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.697 kcal (2) G-P(sol) polarization free energy of solvation -91.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds