Wall clock time and date at job start Fri Apr 10 2020 18:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99928 * 2 1 4 4 H 1.09000 * 109.46951 * 30.00524 * 3 2 1 5 5 C 1.53000 * 109.47321 * 270.00311 * 3 2 1 6 6 C 1.50706 * 109.46864 * 150.00148 * 3 2 1 7 7 O 1.21280 * 119.99675 * 12.56349 * 6 3 2 8 8 N 1.34773 * 119.99975 * 192.56352 * 6 3 2 9 9 C 1.47142 * 125.60500 * 355.09621 * 8 6 3 10 10 C 1.54590 * 107.32690 * 179.04231 * 9 8 6 11 11 C 1.53710 * 102.78354 * 339.11661 * 10 9 8 12 12 C 1.53208 * 111.54209 * 153.97313 * 11 10 9 13 13 C 1.54802 * 101.38797 * 145.81657 * 12 11 10 14 14 N 1.46921 * 105.54156 * 335.83091 * 13 12 11 15 15 C 1.46499 * 124.37639 * 196.74281 * 14 13 12 16 16 C 1.52993 * 109.47308 * 90.00201 * 15 14 13 17 17 C 1.50699 * 109.47380 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00130 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00121 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00069 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00082 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47309 * 269.99803 * 21 19 17 23 23 H 1.48500 * 109.47331 * 30.00022 * 21 19 17 24 24 H 1.48508 * 109.47403 * 150.00077 * 21 19 17 25 25 C 1.34888 * 111.24556 * 17.01425 * 14 13 12 26 26 O 1.21287 * 125.22149 * 178.49307 * 25 14 13 27 27 C 1.47697 * 125.61076 * 175.06915 * 8 6 3 28 28 H 1.09000 * 109.46965 * 299.99178 * 1 2 3 29 29 H 1.09001 * 109.47309 * 59.99851 * 1 2 3 30 30 H 1.09002 * 109.47044 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46730 * 64.75291 * 5 3 2 32 32 H 1.09002 * 109.46505 * 184.75317 * 5 3 2 33 33 H 1.08998 * 109.46916 * 304.75132 * 5 3 2 34 34 H 1.09003 * 109.87203 * 298.46722 * 9 8 6 35 35 H 1.08989 * 109.87544 * 59.60455 * 9 8 6 36 36 H 1.09001 * 110.74635 * 220.79439 * 10 9 8 37 37 H 1.08997 * 110.75059 * 97.44213 * 10 9 8 38 38 H 1.09003 * 111.04033 * 27.78699 * 12 11 10 39 39 H 1.09003 * 111.04160 * 263.84454 * 12 11 10 40 40 H 1.09004 * 110.22670 * 216.81204 * 13 12 11 41 41 H 1.08996 * 110.30367 * 94.89051 * 13 12 11 42 42 H 1.09000 * 109.47505 * 330.00001 * 15 14 13 43 43 H 1.09001 * 109.47396 * 210.00382 * 15 14 13 44 44 H 1.09003 * 109.46882 * 60.00252 * 16 15 14 45 45 H 1.09001 * 109.47040 * 300.00399 * 16 15 14 46 46 H 0.97005 * 120.00489 * 179.97438 * 20 19 17 47 47 H 1.09004 * 110.38892 * 83.81769 * 27 8 6 48 48 H 1.09003 * 110.48847 * 321.48217 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.3387 1.2638 0.7104 7 8 3.8547 0.1973 0.9692 8 7 3.9532 2.4118 1.0581 9 6 3.4926 3.7672 0.7177 10 6 4.4935 4.7647 1.3446 11 6 5.1632 3.9274 2.4461 12 6 6.5700 4.4423 2.7671 13 6 6.6583 4.1628 4.2871 14 7 5.2685 4.1280 4.7624 15 6 4.8719 4.2415 6.1681 16 6 4.6502 5.7142 6.5182 17 6 4.2416 5.8310 7.9640 18 1 4.1497 4.9435 8.5725 19 6 3.9852 7.0707 8.5100 20 7 4.0966 8.1515 7.7689 21 14 3.4794 7.2155 10.3024 22 1 2.0000 7.1387 10.4071 23 1 4.0889 6.1067 11.0798 24 1 3.9471 8.5162 10.8453 25 6 4.4053 3.9721 3.7377 26 8 3.2003 3.8847 3.8452 27 6 5.1994 2.5164 1.8439 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.2496 1.8826 -1.9310 32 1 2.7374 2.7296 -1.4435 33 1 2.8136 1.0342 -1.9803 34 1 3.4748 3.8915 -0.3651 35 1 2.4968 3.9342 1.1281 36 1 3.9698 5.6190 1.7735 37 1 5.2271 5.0905 0.6073 38 1 6.6530 5.5093 2.5599 39 1 7.3269 3.8793 2.2211 40 1 7.2074 4.9615 4.7859 41 1 7.1426 3.2032 4.4677 42 1 5.6584 3.8318 6.8018 43 1 3.9481 3.6863 6.3310 44 1 3.8635 6.1239 5.8845 45 1 5.5740 6.2694 6.3553 46 1 3.9158 9.0238 8.1529 47 1 6.0680 2.4025 1.1954 48 1 5.2158 1.7664 2.6347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269775310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:25 Heat of formation + Delta-G solvation = -134.514457 kcal Electronic energy + Delta-G solvation = -28661.401184 eV Core-core repulsion = 24715.455038 eV Total energy + Delta-G solvation = -3945.946146 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.35746 -40.86595 -38.85607 -37.99947 -37.48702 -35.72610 -34.27694 -32.76322 -31.71205 -30.48219 -29.17829 -27.77362 -27.16085 -26.32970 -24.44083 -23.73199 -23.38745 -21.86433 -20.68772 -20.02449 -18.71437 -18.59240 -17.84098 -17.32376 -16.99974 -16.98453 -16.59366 -16.50238 -16.23140 -16.06321 -15.28518 -14.94699 -14.79585 -14.65962 -14.59831 -14.27713 -14.15932 -13.95217 -13.85016 -13.61780 -13.49045 -13.39192 -13.17935 -12.92018 -12.79808 -12.77040 -12.59182 -12.47635 -12.13517 -12.01949 -11.94494 -11.85856 -11.68078 -11.42840 -11.13720 -10.66313 -10.60705 -10.59105 -9.77530 -9.56174 -8.25975 -6.38433 1.37590 1.38652 1.39560 1.50008 1.53426 1.65874 2.12301 2.39770 2.84530 3.07538 3.21651 3.24543 3.32224 3.59326 3.81766 3.84640 3.94477 3.99244 4.20482 4.24859 4.30505 4.39625 4.40885 4.47598 4.48860 4.54823 4.62293 4.65248 4.72228 4.74919 4.78981 4.81450 4.84598 4.91424 4.97465 5.06956 5.16709 5.18581 5.21401 5.30701 5.44811 5.57336 5.80211 5.99224 6.13565 6.27843 6.35694 6.76144 6.99414 7.18908 7.31285 8.85965 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.002853 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.860512 B = 9811.673642 C =10545.340406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.396 6.396 3 C 0.072 3.928 4 H 0.095 0.905 5 C -0.162 4.162 6 C 0.523 3.477 7 O -0.576 6.576 8 N -0.613 5.613 9 C 0.094 3.906 10 C -0.101 4.101 11 C -0.106 4.106 12 C -0.100 4.100 13 C 0.087 3.913 14 N -0.622 5.622 15 C 0.142 3.858 16 C 0.029 3.971 17 C -0.548 4.548 18 H 0.062 0.938 19 C 0.004 3.996 20 N -0.929 5.929 21 Si 0.967 3.033 22 H -0.277 1.277 23 H -0.260 1.260 24 H -0.277 1.277 25 C 0.510 3.490 26 O -0.577 6.577 27 C 0.136 3.864 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.115 0.885 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.135 0.865 38 H 0.104 0.896 39 H 0.137 0.863 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.045 0.955 44 H -0.025 1.025 45 H 0.005 0.995 46 H 0.265 0.735 47 H 0.120 0.880 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.865 -7.828 -21.786 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.011 3.989 4 H 0.112 0.888 5 C -0.220 4.220 6 C 0.312 3.688 7 O -0.455 6.455 8 N -0.347 5.347 9 C -0.027 4.027 10 C -0.139 4.139 11 C -0.110 4.110 12 C -0.138 4.138 13 C -0.034 4.034 14 N -0.354 5.354 15 C 0.020 3.980 16 C -0.009 4.009 17 C -0.587 4.587 18 H 0.080 0.920 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.791 3.209 22 H -0.202 1.202 23 H -0.184 1.184 24 H -0.202 1.202 25 C 0.298 3.702 26 O -0.456 6.456 27 C 0.013 3.987 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.133 0.867 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.153 0.847 38 H 0.122 0.878 39 H 0.155 0.845 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.064 0.936 44 H -0.006 1.006 45 H 0.023 0.977 46 H 0.074 0.926 47 H 0.138 0.862 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.559 -8.498 -21.515 23.274 hybrid contribution -0.945 0.465 1.671 1.975 sum 1.614 -8.033 -19.844 21.469 Atomic orbital electron populations 1.23091 0.78646 1.04315 1.01276 1.87981 1.21917 1.26362 1.95241 1.22025 0.91648 0.86614 0.98604 0.88756 1.22251 1.04763 1.02709 0.92251 1.20677 0.86990 0.82321 0.78810 1.90672 1.67403 1.30664 1.56753 1.48535 1.26164 1.06369 1.53652 1.22484 0.98678 0.79669 1.01896 1.22515 0.98734 0.96495 0.96181 1.21564 0.98564 0.97916 0.92971 1.22596 0.93355 1.04367 0.93481 1.22527 0.81173 1.03507 0.96229 1.48819 1.09109 1.70635 1.06796 1.21329 0.99421 0.97767 0.79510 1.19161 0.94892 0.91771 0.95108 1.21539 1.47046 0.93293 0.96780 0.91951 1.25958 0.95066 0.95385 1.03046 1.70092 1.49868 0.98652 1.38273 0.85416 0.78491 0.78031 0.78925 1.20245 1.18402 1.20243 1.21019 0.86505 0.74976 0.87686 1.90642 1.15551 1.52471 1.86979 1.22004 0.88225 0.93764 0.94676 0.93881 0.91306 0.88198 0.88978 0.88776 0.91878 0.86721 0.92195 0.90761 0.84653 0.87777 0.84488 0.89887 0.89132 0.89499 0.93597 1.00636 0.97713 0.92595 0.86232 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.82 113.37 1.23 1.61 16 2 O -0.40 -10.40 9.91 -130.25 -1.29 -11.69 16 3 C 0.07 1.61 2.53 29.85 0.08 1.69 16 4 H 0.09 1.91 7.48 -2.39 -0.02 1.89 16 5 C -0.16 -2.26 9.44 71.98 0.68 -1.58 16 6 C 0.52 15.33 7.17 87.66 0.63 15.96 16 7 O -0.58 -22.16 16.86 15.70 0.26 -21.90 16 8 N -0.61 -14.86 3.34 -813.12 -2.71 -17.57 16 9 C 0.09 1.69 5.81 86.80 0.50 2.19 16 10 C -0.10 -1.74 5.81 31.37 0.18 -1.56 16 11 C -0.11 -2.39 0.68 -52.74 -0.04 -2.42 16 12 C -0.10 -1.54 6.27 31.28 0.20 -1.35 16 13 C 0.09 2.02 7.37 86.91 0.64 2.66 16 14 N -0.62 -22.25 2.95 -818.21 -2.41 -24.67 16 15 C 0.14 6.18 5.89 86.38 0.51 6.69 16 16 C 0.03 1.55 5.30 29.85 0.16 1.70 16 17 C -0.55 -31.61 9.11 25.60 0.23 -31.38 16 18 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 19 C 0.00 0.23 5.46 84.65 0.46 0.69 16 20 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 21 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 25 C 0.51 18.58 6.77 87.37 0.59 19.17 16 26 O -0.58 -26.60 17.26 -3.05 -0.05 -26.65 16 27 C 0.14 3.06 5.87 86.30 0.51 3.57 16 28 H 0.04 0.73 8.08 -2.39 -0.02 0.72 16 29 H 0.07 0.80 7.98 -2.39 -0.02 0.78 16 30 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.09 0.89 7.98 -2.39 -0.02 0.87 16 32 H 0.09 0.91 5.52 -2.39 -0.01 0.90 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.12 1.12 6.03 -2.39 -0.01 1.11 16 35 H 0.06 1.30 7.94 -2.39 -0.02 1.28 16 36 H 0.07 1.60 8.01 -2.39 -0.02 1.58 16 37 H 0.14 1.12 8.04 -2.39 -0.02 1.10 16 38 H 0.10 1.41 7.96 -2.39 -0.02 1.39 16 39 H 0.14 0.98 7.63 -2.39 -0.02 0.96 16 40 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 43 H 0.05 2.19 7.93 -2.39 -0.02 2.17 16 44 H -0.02 -1.54 8.14 -2.39 -0.02 -1.56 16 45 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 46 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 47 H 0.12 1.82 7.75 -2.39 -0.02 1.80 16 48 H 0.05 1.44 7.98 -2.39 -0.02 1.42 16 Total: -1.00 -88.46 388.12 3.60 -84.86 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.94 Total: 9.78 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 6.56 Total: 17.65 kcal Atomic # 7 Polarization: -93.68 SS G_CDS: -4.84 Total: -98.52 kcal Atomic # 8 Polarization: -59.16 SS G_CDS: -1.08 Total: -60.24 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -88.46 3.60 -84.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269775310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.654 kcal (2) G-P(sol) polarization free energy of solvation -88.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds