Wall clock time and date at job start Fri Apr 10 2020 18:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46750 * 2 1 4 4 O 1.42900 * 109.46967 * 239.99891 * 2 1 3 5 5 C 1.53001 * 109.47113 * 119.99885 * 2 1 3 6 6 C 1.50697 * 109.47042 * 185.00321 * 5 2 1 7 7 O 1.21281 * 119.99810 * 359.97438 * 6 5 2 8 8 N 1.34780 * 119.99718 * 179.97438 * 6 5 2 9 9 C 1.47137 * 125.73622 * 359.97438 * 8 6 5 10 10 C 1.54337 * 107.22942 * 179.63361 * 9 8 6 11 11 C 1.55423 * 103.00395 * 337.84959 * 10 9 8 12 12 H 1.08998 * 112.31875 * 154.02817 * 11 10 9 13 13 C 1.46915 * 125.73124 * 179.97438 * 8 6 5 14 14 H 1.08996 * 109.82531 * 84.85180 * 13 8 6 15 15 C 1.52360 * 110.80192 * 323.13705 * 13 8 6 16 16 C 1.52984 * 109.45861 * 306.79559 * 15 13 8 17 17 C 1.50313 * 109.23389 * 308.22282 * 16 15 13 18 18 O 1.21277 * 118.56647 * 201.39392 * 17 16 15 19 19 N 1.33119 * 122.85775 * 21.42003 * 17 16 15 20 20 C 1.46497 * 117.26648 * 179.85017 * 19 17 16 21 21 C 1.53000 * 109.47084 * 89.99820 * 20 19 17 22 22 C 1.50705 * 109.47229 * 179.97438 * 21 20 19 23 23 H 1.08002 * 120.00154 * 0.02562 * 22 21 20 24 24 C 1.37878 * 120.00087 * 179.97438 * 22 21 20 25 25 N 1.31513 * 119.99912 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99767 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47388 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.46967 * 120.00069 * 26 24 22 29 29 H 1.48504 * 109.46999 * 239.99944 * 26 24 22 30 30 H 1.08997 * 109.47397 * 299.99959 * 1 2 3 31 31 H 1.08999 * 109.47624 * 60.00539 * 1 2 3 32 32 H 1.09003 * 109.47060 * 180.02562 * 1 2 3 33 33 H 0.96701 * 113.99948 * 299.99674 * 4 2 1 34 34 H 1.08999 * 109.47314 * 64.99706 * 5 2 1 35 35 H 1.09008 * 109.47001 * 305.00147 * 5 2 1 36 36 H 1.09004 * 109.88306 * 299.03817 * 9 8 6 37 37 H 1.08997 * 109.89363 * 60.05993 * 9 8 6 38 38 H 1.08999 * 110.70729 * 219.46604 * 10 9 8 39 39 H 1.08997 * 110.70573 * 96.22744 * 10 9 8 40 40 H 1.09003 * 109.43808 * 186.82467 * 15 13 8 41 41 H 1.08991 * 109.51663 * 66.81589 * 15 13 8 42 42 H 1.09002 * 109.51776 * 188.27948 * 16 15 13 43 43 H 1.09001 * 109.51789 * 68.16754 * 16 15 13 44 44 H 1.08995 * 109.47387 * 209.99882 * 20 19 17 45 45 H 1.09001 * 109.47171 * 330.00071 * 20 19 17 46 46 H 1.08994 * 109.47625 * 299.99759 * 21 20 19 47 47 H 1.09000 * 109.47478 * 60.00592 * 21 20 19 48 48 H 0.97001 * 119.99710 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7212 1.2493 6 6 3.5419 -0.6148 1.3128 7 8 4.1450 -0.0210 0.4441 8 7 4.2148 -1.1795 2.3349 9 6 3.6137 -1.9254 3.4517 10 6 4.7677 -2.3884 4.3660 11 6 5.9979 -2.3633 3.4163 12 1 6.9342 -2.2195 3.9555 13 6 5.6719 -1.1538 2.5212 14 1 5.9640 -0.2320 3.0243 15 6 6.3906 -1.2668 1.1825 16 6 5.8767 -2.4958 0.4303 17 6 5.9583 -3.6970 1.3301 18 8 5.9777 -4.7995 0.8253 19 7 6.0097 -3.6033 2.6570 20 6 6.0839 -4.8543 3.4158 21 6 7.5502 -5.2403 3.6206 22 6 7.6266 -6.5269 4.4017 23 1 6.7200 -7.0201 4.7199 24 6 8.8538 -7.0748 4.7093 25 7 9.9578 -6.4744 4.3215 26 14 8.9484 -8.6699 5.6769 27 1 7.5755 -9.1407 5.9908 28 1 9.6511 -9.6984 4.8683 29 1 9.6940 -8.4390 6.9403 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.7210 -1.5953 -1.2328 34 1 1.7517 -1.7715 1.2057 35 1 1.6054 -0.2617 2.1370 36 1 2.9366 -1.2775 4.0084 37 1 3.0699 -2.7896 3.0704 38 1 4.5860 -3.3978 4.7348 39 1 4.9059 -1.6933 5.1941 40 1 7.4624 -1.3674 1.3536 41 1 6.1997 -0.3721 0.5901 42 1 6.4887 -2.6624 -0.4561 43 1 4.8408 -2.3335 0.1324 44 1 5.6047 -4.7201 4.3855 45 1 5.5738 -5.6444 2.8647 46 1 8.0295 -5.3746 2.6510 47 1 8.0603 -4.4504 4.1718 48 1 10.8212 -6.8597 4.5383 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270413710.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:34 Heat of formation + Delta-G solvation = -118.253202 kcal Electronic energy + Delta-G solvation = -29480.567738 eV Core-core repulsion = 25535.326734 eV Total energy + Delta-G solvation = -3945.241005 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.34809 -39.45244 -37.93137 -36.99952 -34.90638 -33.94128 -32.87424 -32.22404 -30.97976 -29.34813 -28.68363 -27.92664 -25.10303 -24.29901 -23.00108 -22.11683 -21.69603 -20.94820 -19.32562 -17.98525 -17.19913 -17.13677 -16.63799 -16.41497 -16.23430 -15.81310 -15.44562 -14.96780 -14.74749 -14.40611 -14.37997 -14.07637 -13.68362 -13.46500 -13.40757 -12.89184 -12.75749 -12.54067 -12.43012 -12.41424 -12.27121 -12.05447 -11.96969 -11.74734 -11.33369 -11.15601 -11.12484 -10.97372 -10.88793 -10.87022 -10.64432 -10.40500 -9.87870 -9.83474 -9.72065 -9.28606 -8.96708 -8.76428 -8.35890 -8.06156 -6.01139 -4.03985 2.50763 2.74487 3.16812 3.30521 3.37763 3.40993 3.48328 4.01229 4.16159 4.35217 4.38223 4.45795 4.47534 4.74347 4.81037 4.84137 4.87154 4.94434 5.02445 5.11108 5.12059 5.16224 5.33031 5.35234 5.41494 5.45546 5.58007 5.65940 5.68191 5.73888 5.79150 5.84694 5.93553 6.03744 6.14019 6.22207 6.32836 6.54308 6.83874 6.90241 7.35774 7.44828 7.62614 7.75422 7.99866 8.05760 8.07121 8.36773 8.72613 9.03059 9.59820 11.10377 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.024071 B = 0.003023 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.945382 B = 9261.440683 C = 9373.760300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.119 3.881 3 H 0.104 0.896 4 O -0.548 6.548 5 C -0.173 4.173 6 C 0.530 3.470 7 O -0.518 6.518 8 N -0.615 5.615 9 C 0.104 3.896 10 C -0.149 4.149 11 C 0.137 3.863 12 H 0.107 0.893 13 C 0.132 3.868 14 H 0.090 0.910 15 C -0.131 4.131 16 C -0.124 4.124 17 C 0.513 3.487 18 O -0.549 6.549 19 N -0.591 5.591 20 C 0.106 3.894 21 C 0.016 3.984 22 C -0.518 4.518 23 H 0.056 0.944 24 C 0.058 3.942 25 N -0.893 5.893 26 Si 0.893 3.107 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.284 1.284 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.369 0.631 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.021 0.979 47 H 0.014 0.986 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.215 16.163 -1.785 24.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.059 3.941 3 H 0.122 0.878 4 O -0.352 6.352 5 C -0.213 4.213 6 C 0.318 3.682 7 O -0.393 6.393 8 N -0.351 5.351 9 C -0.019 4.019 10 C -0.188 4.188 11 C 0.032 3.968 12 H 0.125 0.875 13 C 0.029 3.971 14 H 0.108 0.892 15 C -0.169 4.169 16 C -0.164 4.164 17 C 0.301 3.699 18 O -0.428 6.428 19 N -0.323 5.323 20 C -0.015 4.015 21 C -0.022 4.022 22 C -0.557 4.557 23 H 0.074 0.926 24 C -0.143 4.143 25 N -0.532 5.532 26 Si 0.721 3.279 27 H -0.197 1.197 28 H -0.210 1.210 29 H -0.210 1.210 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.216 0.784 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.040 0.960 47 H 0.032 0.968 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.484 16.546 -2.721 24.225 hybrid contribution -0.116 -1.480 1.008 1.794 sum -17.600 15.066 -1.713 23.231 Atomic orbital electron populations 1.22537 0.96154 1.02689 1.02998 1.21634 0.92056 0.97157 0.83209 0.87805 1.86731 1.76986 1.28470 1.42997 1.22514 0.93207 1.03771 1.01819 1.20098 0.89465 0.78488 0.80110 1.90719 1.69585 1.41851 1.37160 1.48522 1.07196 1.54963 1.24447 1.22048 0.96581 0.95661 0.87624 1.23238 0.93928 1.03974 0.97623 1.21958 0.98864 0.83861 0.92136 0.87515 1.21703 0.80573 0.97867 0.96982 0.89226 1.21723 0.99895 1.00005 0.95298 1.21525 1.03782 0.92552 0.98543 1.19997 0.76400 0.90938 0.82542 1.90724 1.50376 1.28171 1.73498 1.47245 1.71864 1.07381 1.05820 1.21961 1.01745 0.83790 0.93958 1.19328 0.89301 0.96202 0.97390 1.21123 0.92312 1.07633 1.34655 0.92573 1.25000 0.95807 0.97441 0.96084 1.69983 0.97453 1.39428 1.46345 0.86521 0.78086 0.83639 0.79648 1.19710 1.20993 1.21048 0.91535 0.91395 0.92204 0.78430 0.88732 0.88218 0.91214 0.91455 0.88287 0.89372 0.90466 0.88292 0.88749 0.89228 0.91754 0.90695 0.96034 0.96759 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.03 9.53 37.16 0.35 -0.68 16 2 C 0.12 0.97 3.13 -26.73 -0.08 0.88 16 3 H 0.10 0.98 7.96 -51.93 -0.41 0.57 16 4 O -0.55 -5.75 12.57 -49.66 -0.62 -6.37 16 5 C -0.17 -1.29 4.58 -27.88 -0.13 -1.42 16 6 C 0.53 5.90 6.23 -10.99 -0.07 5.83 16 7 O -0.52 -7.47 12.68 -8.87 -0.11 -7.58 16 8 N -0.62 -6.48 2.82 -164.27 -0.46 -6.94 16 9 C 0.10 0.89 6.46 -2.99 -0.02 0.87 16 10 C -0.15 -1.45 6.37 -24.74 -0.16 -1.61 16 11 C 0.14 1.76 3.67 -66.73 -0.25 1.52 16 12 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 13 C 0.13 1.52 3.27 -67.53 -0.22 1.30 16 14 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 15 C -0.13 -1.74 4.96 -27.07 -0.13 -1.88 16 16 C -0.12 -1.93 5.59 -28.08 -0.16 -2.09 16 17 C 0.51 9.76 7.45 -11.91 -0.09 9.67 16 18 O -0.55 -13.03 16.16 5.56 0.09 -12.94 16 19 N -0.59 -10.17 2.50 -165.51 -0.41 -10.58 16 20 C 0.11 2.17 4.85 -4.04 -0.02 2.15 16 21 C 0.02 0.41 5.28 -27.88 -0.15 0.26 16 22 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 23 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 24 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 25 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16 26 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 27 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.37 2.64 9.05 45.56 0.41 3.05 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 1.06 5.85 -51.93 -0.30 0.76 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.10 1.36 6.27 -51.93 -0.33 1.04 16 42 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.09 1.39 6.13 -51.93 -0.32 1.07 16 44 H 0.06 1.15 5.87 -51.93 -0.30 0.84 16 45 H 0.07 1.69 7.13 -51.93 -0.37 1.32 16 46 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -36.49 375.10 -8.76 -45.25 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.08 Total: 1.66 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -1.53 Total: 1.50 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.14 Total: -43.81 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.65 Total: -26.89 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.49 -8.76 -45.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270413710.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.004 kcal (2) G-P(sol) polarization free energy of solvation -36.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds