Wall clock time and date at job start Fri Apr 10 2020 18:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46750 * 2 1 4 4 O 1.42900 * 109.46967 * 239.99891 * 2 1 3 5 5 C 1.53001 * 109.47113 * 119.99885 * 2 1 3 6 6 C 1.50697 * 109.47042 * 185.00321 * 5 2 1 7 7 O 1.21281 * 119.99810 * 359.97438 * 6 5 2 8 8 N 1.34780 * 119.99718 * 179.97438 * 6 5 2 9 9 C 1.47137 * 125.73622 * 359.97438 * 8 6 5 10 10 C 1.54337 * 107.22942 * 179.63361 * 9 8 6 11 11 C 1.55423 * 103.00395 * 337.84959 * 10 9 8 12 12 H 1.08998 * 112.31875 * 154.02817 * 11 10 9 13 13 C 1.46915 * 125.73124 * 179.97438 * 8 6 5 14 14 H 1.08996 * 109.82531 * 84.85180 * 13 8 6 15 15 C 1.52360 * 110.80192 * 323.13705 * 13 8 6 16 16 C 1.52984 * 109.45861 * 306.79559 * 15 13 8 17 17 C 1.50313 * 109.23389 * 308.22282 * 16 15 13 18 18 O 1.21277 * 118.56647 * 201.39392 * 17 16 15 19 19 N 1.33119 * 122.85775 * 21.42003 * 17 16 15 20 20 C 1.46497 * 117.26648 * 179.85017 * 19 17 16 21 21 C 1.53000 * 109.47084 * 89.99820 * 20 19 17 22 22 C 1.50705 * 109.47229 * 179.97438 * 21 20 19 23 23 H 1.08002 * 120.00154 * 0.02562 * 22 21 20 24 24 C 1.37878 * 120.00087 * 179.97438 * 22 21 20 25 25 N 1.31513 * 119.99912 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99767 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47388 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.46967 * 120.00069 * 26 24 22 29 29 H 1.48504 * 109.46999 * 239.99944 * 26 24 22 30 30 H 1.08997 * 109.47397 * 299.99959 * 1 2 3 31 31 H 1.08999 * 109.47624 * 60.00539 * 1 2 3 32 32 H 1.09003 * 109.47060 * 180.02562 * 1 2 3 33 33 H 0.96701 * 113.99948 * 299.99674 * 4 2 1 34 34 H 1.08999 * 109.47314 * 64.99706 * 5 2 1 35 35 H 1.09008 * 109.47001 * 305.00147 * 5 2 1 36 36 H 1.09004 * 109.88306 * 299.03817 * 9 8 6 37 37 H 1.08997 * 109.89363 * 60.05993 * 9 8 6 38 38 H 1.08999 * 110.70729 * 219.46604 * 10 9 8 39 39 H 1.08997 * 110.70573 * 96.22744 * 10 9 8 40 40 H 1.09003 * 109.43808 * 186.82467 * 15 13 8 41 41 H 1.08991 * 109.51663 * 66.81589 * 15 13 8 42 42 H 1.09002 * 109.51776 * 188.27948 * 16 15 13 43 43 H 1.09001 * 109.51789 * 68.16754 * 16 15 13 44 44 H 1.08995 * 109.47387 * 209.99882 * 20 19 17 45 45 H 1.09001 * 109.47171 * 330.00071 * 20 19 17 46 46 H 1.08994 * 109.47625 * 299.99759 * 21 20 19 47 47 H 1.09000 * 109.47478 * 60.00592 * 21 20 19 48 48 H 0.97001 * 119.99710 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7212 1.2493 6 6 3.5419 -0.6148 1.3128 7 8 4.1450 -0.0210 0.4441 8 7 4.2148 -1.1795 2.3349 9 6 3.6137 -1.9254 3.4517 10 6 4.7677 -2.3884 4.3660 11 6 5.9979 -2.3633 3.4163 12 1 6.9342 -2.2195 3.9555 13 6 5.6719 -1.1538 2.5212 14 1 5.9640 -0.2320 3.0243 15 6 6.3906 -1.2668 1.1825 16 6 5.8767 -2.4958 0.4303 17 6 5.9583 -3.6970 1.3301 18 8 5.9777 -4.7995 0.8253 19 7 6.0097 -3.6033 2.6570 20 6 6.0839 -4.8543 3.4158 21 6 7.5502 -5.2403 3.6206 22 6 7.6266 -6.5269 4.4017 23 1 6.7200 -7.0201 4.7199 24 6 8.8538 -7.0748 4.7093 25 7 9.9578 -6.4744 4.3215 26 14 8.9484 -8.6699 5.6769 27 1 7.5755 -9.1407 5.9908 28 1 9.6511 -9.6984 4.8683 29 1 9.6940 -8.4390 6.9403 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.7210 -1.5953 -1.2328 34 1 1.7517 -1.7715 1.2057 35 1 1.6054 -0.2617 2.1370 36 1 2.9366 -1.2775 4.0084 37 1 3.0699 -2.7896 3.0704 38 1 4.5860 -3.3978 4.7348 39 1 4.9059 -1.6933 5.1941 40 1 7.4624 -1.3674 1.3536 41 1 6.1997 -0.3721 0.5901 42 1 6.4887 -2.6624 -0.4561 43 1 4.8408 -2.3335 0.1324 44 1 5.6047 -4.7201 4.3855 45 1 5.5738 -5.6444 2.8647 46 1 8.0295 -5.3746 2.6510 47 1 8.0603 -4.4504 4.1718 48 1 10.8212 -6.8597 4.5383 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270413710.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:34 Heat of formation + Delta-G solvation = -144.403386 kcal Electronic energy + Delta-G solvation = -29481.701695 eV Core-core repulsion = 25535.326734 eV Total energy + Delta-G solvation = -3946.374962 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.44995 -40.56210 -38.97720 -37.88467 -36.46084 -35.17752 -34.71990 -32.95742 -32.15977 -30.99810 -29.65286 -28.63969 -26.97548 -25.31140 -24.29645 -23.19577 -22.74676 -22.25150 -20.31991 -19.08442 -18.80140 -18.12949 -17.79612 -17.50300 -17.32492 -17.03371 -16.75539 -16.42492 -15.90107 -15.76842 -15.28120 -14.90288 -14.75021 -14.61343 -14.58628 -14.29221 -14.19392 -13.80673 -13.75595 -13.47146 -13.15602 -13.03889 -12.87057 -12.83001 -12.67555 -12.58666 -12.46709 -12.28150 -12.09345 -11.98352 -11.78770 -11.69773 -11.65851 -11.37223 -11.06340 -10.77361 -10.58064 -10.41172 -9.62429 -9.60702 -8.21663 -6.33512 1.39308 1.41426 1.53892 1.62173 1.71290 1.96457 2.06453 2.41955 3.12360 3.16876 3.48145 3.54273 3.55778 3.74164 3.79703 3.84032 3.97166 4.09028 4.20646 4.27066 4.32593 4.37648 4.41007 4.54489 4.59933 4.65094 4.69089 4.70689 4.78710 4.80711 4.84600 4.92169 4.95799 5.03909 5.06106 5.16233 5.20811 5.30817 5.31559 5.39703 5.49970 5.61126 5.83698 6.18783 6.55006 6.58910 6.82654 6.90251 7.20980 7.25377 7.36072 8.90770 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.024071 B = 0.003023 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.945382 B = 9261.440683 C = 9373.760300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.116 3.884 3 H 0.085 0.915 4 O -0.578 6.578 5 C -0.163 4.163 6 C 0.522 3.478 7 O -0.558 6.558 8 N -0.616 5.616 9 C 0.104 3.896 10 C -0.140 4.140 11 C 0.121 3.879 12 H 0.106 0.894 13 C 0.136 3.864 14 H 0.116 0.884 15 C -0.126 4.126 16 C -0.112 4.112 17 C 0.507 3.493 18 O -0.607 6.607 19 N -0.582 5.582 20 C 0.124 3.876 21 C 0.027 3.973 22 C -0.538 4.538 23 H 0.066 0.934 24 C -0.001 4.001 25 N -0.934 5.934 26 Si 0.968 3.032 27 H -0.257 1.257 28 H -0.285 1.285 29 H -0.273 1.273 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.380 0.620 34 H 0.108 0.892 35 H 0.131 0.869 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.051 0.949 46 H -0.032 1.032 47 H 0.002 0.998 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.646 16.873 0.812 26.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.057 3.943 3 H 0.103 0.897 4 O -0.384 6.384 5 C -0.203 4.203 6 C 0.313 3.687 7 O -0.436 6.436 8 N -0.351 5.351 9 C -0.018 4.018 10 C -0.178 4.178 11 C 0.018 3.982 12 H 0.123 0.877 13 C 0.032 3.968 14 H 0.134 0.866 15 C -0.164 4.164 16 C -0.152 4.152 17 C 0.296 3.704 18 O -0.489 6.489 19 N -0.312 5.312 20 C 0.002 3.998 21 C -0.011 4.011 22 C -0.576 4.576 23 H 0.084 0.916 24 C -0.199 4.199 25 N -0.574 5.574 26 Si 0.793 3.207 27 H -0.181 1.181 28 H -0.212 1.212 29 H -0.199 1.199 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.229 0.771 34 H 0.126 0.874 35 H 0.149 0.851 36 H 0.127 0.873 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.139 0.861 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.118 0.882 45 H 0.069 0.931 46 H -0.014 1.014 47 H 0.020 0.980 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.950 17.289 -0.075 26.399 hybrid contribution 0.697 -1.665 0.163 1.812 sum -19.254 15.624 0.088 24.796 Atomic orbital electron populations 1.22442 0.93926 1.03561 1.03507 1.21693 0.93673 0.96097 0.82883 0.89732 1.86687 1.77780 1.29583 1.44397 1.22519 0.90340 1.04792 1.02646 1.20785 0.90917 0.77632 0.79372 1.90705 1.70653 1.43683 1.38580 1.48604 1.06614 1.54875 1.25002 1.22218 0.96458 0.96223 0.86940 1.23243 0.92119 1.04523 0.97896 1.22333 1.00799 0.82230 0.92882 0.87659 1.21682 0.81490 0.98097 0.95486 0.86602 1.21670 0.99943 0.98419 0.96326 1.21414 1.03953 0.92054 0.97763 1.20613 0.75387 0.91061 0.83336 1.90690 1.53139 1.30420 1.74686 1.47239 1.70477 1.08141 1.05342 1.21539 0.97834 0.84831 0.95607 1.19143 0.92340 0.95621 0.93987 1.21575 0.92884 1.08504 1.34678 0.91558 1.26009 0.95371 1.01366 0.97159 1.70126 0.98173 1.41435 1.47713 0.85351 0.78793 0.78509 0.78088 1.18081 1.21160 1.19852 0.89770 0.92154 0.91107 0.77139 0.87369 0.85085 0.87309 0.91771 0.89112 0.86112 0.90807 0.88410 0.89561 0.88864 0.88238 0.93077 1.01387 0.97968 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 9.53 71.98 0.69 -0.86 16 2 C 0.12 1.71 3.13 30.60 0.10 1.81 16 3 H 0.08 1.55 7.96 -2.39 -0.02 1.53 16 4 O -0.58 -11.96 12.57 -135.19 -1.70 -13.66 16 5 C -0.16 -1.96 4.58 29.85 0.14 -1.82 16 6 C 0.52 10.59 6.23 87.66 0.55 11.14 16 7 O -0.56 -15.74 12.68 10.76 0.14 -15.60 16 8 N -0.62 -11.29 2.82 -792.02 -2.23 -13.52 16 9 C 0.10 1.36 6.46 86.71 0.56 1.92 16 10 C -0.14 -2.20 6.37 31.88 0.20 -1.99 16 11 C 0.12 2.92 3.67 46.36 0.17 3.09 16 12 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 13 C 0.14 2.87 3.27 45.03 0.15 3.02 16 14 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 15 C -0.13 -3.32 4.96 30.38 0.15 -3.16 16 16 C -0.11 -3.59 5.59 29.72 0.17 -3.42 16 17 C 0.51 19.98 7.45 87.79 0.65 20.64 16 18 O -0.61 -30.44 16.16 -3.02 -0.05 -30.49 16 19 N -0.58 -20.16 2.50 -796.85 -1.99 -22.14 16 20 C 0.12 5.12 4.85 86.38 0.42 5.54 16 21 C 0.03 1.45 5.28 29.85 0.16 1.61 16 22 C -0.54 -30.65 9.11 25.60 0.23 -30.41 16 23 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 24 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 25 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 26 Si 0.97 44.40 29.54 68.60 2.03 46.42 16 27 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 29 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 30 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.38 5.29 9.05 -74.06 -0.67 4.62 16 34 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.13 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 38 H 0.09 1.63 5.85 -2.39 -0.01 1.62 16 39 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.10 2.68 6.27 -2.39 -0.01 2.67 16 42 H 0.09 2.87 8.14 -2.39 -0.02 2.86 16 43 H 0.09 2.94 6.13 -2.39 -0.01 2.92 16 44 H 0.10 3.41 5.87 -2.39 -0.01 3.40 16 45 H 0.05 2.37 7.13 -2.39 -0.02 2.35 16 46 H -0.03 -2.07 8.14 -2.39 -0.02 -2.09 16 47 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 48 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -84.21 375.10 1.56 -82.65 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.29 Total: 16.45 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 4.79 Total: 7.48 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -3.93 Total: -93.25 kcal Atomic # 8 Polarization: -58.15 SS G_CDS: -1.61 Total: -59.76 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -84.21 1.56 -82.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270413710.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.751 kcal (2) G-P(sol) polarization free energy of solvation -84.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds