Wall clock time and date at job start Fri Apr 10 2020 18:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.46991 * 2 1 4 4 O 1.42897 * 109.47225 * 240.00241 * 2 1 3 5 5 C 1.53001 * 109.47203 * 119.99900 * 2 1 3 6 6 C 1.50699 * 109.46903 * 185.00197 * 5 2 1 7 7 O 1.21284 * 120.00400 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00055 * 180.02562 * 6 5 2 9 9 C 1.47654 * 125.80895 * 0.02562 * 8 6 5 10 10 C 1.54984 * 104.85408 * 155.97803 * 9 8 6 11 11 C 1.55327 * 101.66444 * 36.60584 * 10 9 8 12 12 C 1.46705 * 125.75636 * 179.97438 * 8 6 5 13 13 C 1.53915 * 110.97963 * 302.17742 * 12 8 6 14 14 C 1.54638 * 101.58886 * 145.04169 * 13 12 8 15 15 N 1.46848 * 105.50540 * 335.21867 * 14 13 12 16 16 C 1.46498 * 124.36735 * 196.87691 * 15 14 13 17 17 C 1.52999 * 109.46935 * 270.02136 * 16 15 14 18 18 C 1.50696 * 109.47166 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00363 * 0.02562 * 18 17 16 20 20 C 1.37888 * 120.00131 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00070 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99811 * 0.02562 * 20 18 17 23 23 H 1.48507 * 109.47125 * 89.99744 * 22 20 18 24 24 H 1.48499 * 109.47171 * 209.99689 * 22 20 18 25 25 H 1.48504 * 109.47154 * 330.00025 * 22 20 18 26 26 C 1.34662 * 111.26562 * 16.87118 * 15 14 13 27 27 O 1.21275 * 125.07398 * 179.17609 * 26 15 14 28 28 H 1.08997 * 109.47357 * 300.00185 * 1 2 3 29 29 H 1.08997 * 109.47164 * 59.99773 * 1 2 3 30 30 H 1.08994 * 109.46995 * 180.02562 * 1 2 3 31 31 H 0.96697 * 114.00291 * 60.00111 * 4 2 1 32 32 H 1.08996 * 109.46821 * 65.00079 * 5 2 1 33 33 H 1.09005 * 109.47056 * 305.00067 * 5 2 1 34 34 H 1.09005 * 110.36331 * 37.13783 * 9 8 6 35 35 H 1.08996 * 110.36957 * 274.82505 * 9 8 6 36 36 H 1.09006 * 110.98514 * 278.51799 * 10 9 8 37 37 H 1.08992 * 110.99345 * 154.70217 * 10 9 8 38 38 H 1.09002 * 110.76074 * 83.40966 * 11 10 9 39 39 H 1.08997 * 110.76519 * 206.60967 * 11 10 9 40 40 H 1.08996 * 110.99928 * 263.12252 * 13 12 8 41 41 H 1.09000 * 110.99782 * 26.96458 * 13 12 8 42 42 H 1.08997 * 110.24047 * 216.20623 * 14 13 12 43 43 H 1.09007 * 110.30974 * 94.26380 * 14 13 12 44 44 H 1.09004 * 109.47419 * 30.01707 * 16 15 14 45 45 H 1.08997 * 109.47338 * 150.02337 * 16 15 14 46 46 H 1.09002 * 109.47179 * 300.00224 * 17 16 15 47 47 H 1.09005 * 109.47206 * 60.00106 * 17 16 15 48 48 H 0.96992 * 120.00220 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2493 6 6 3.5419 -0.6148 1.3127 7 8 4.1451 -0.0210 0.4440 8 7 4.2150 -1.1804 2.3342 9 6 3.6138 -1.9311 3.4546 10 6 4.7470 -2.8562 3.9664 11 6 5.9953 -1.9478 3.7955 12 6 5.6700 -1.1550 2.5206 13 6 6.3915 -1.7719 1.3091 14 6 7.6674 -0.9016 1.2312 15 7 7.3133 0.3722 1.8705 16 6 8.0769 1.6133 1.7201 17 6 9.1433 1.6918 2.8145 18 6 9.9292 2.9682 2.6595 19 1 9.6917 3.6550 1.8605 20 6 10.9510 3.2597 3.5382 21 7 11.6372 4.3734 3.4027 22 14 11.3614 2.0722 4.9205 23 1 12.3782 1.0973 4.4500 24 1 11.8999 2.8286 6.0794 25 1 10.1325 1.3464 5.3308 26 6 6.1962 0.2522 2.6127 27 8 5.6896 1.1447 3.2589 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.7210 -0.2701 -1.9979 32 1 1.7516 -1.7714 1.2056 33 1 1.6054 -0.2617 2.1370 34 1 2.7693 -2.5243 3.1037 35 1 3.2970 -1.2478 4.2425 36 1 4.8284 -3.7516 3.3500 37 1 4.5947 -3.1175 5.0135 38 1 6.1061 -1.2789 4.6489 39 1 6.8944 -2.5485 3.6580 40 1 6.6418 -2.8165 1.4938 41 1 5.7928 -1.6694 0.4040 42 1 7.9481 -0.7363 0.1910 43 1 8.4851 -1.3798 1.7705 44 1 8.5583 1.6276 0.7422 45 1 7.4042 2.4666 1.8065 46 1 8.6620 1.6774 3.7924 47 1 9.8161 0.8385 2.7281 48 1 12.3557 4.5787 4.0210 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270416389.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:42 Heat of formation + Delta-G solvation = -146.215062 kcal Electronic energy + Delta-G solvation = -29219.112687 eV Core-core repulsion = 25272.659165 eV Total energy + Delta-G solvation = -3946.453522 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.44768 -40.35323 -38.62496 -37.77479 -37.51559 -35.62636 -33.96866 -33.22072 -32.43841 -31.12816 -29.25893 -28.67914 -27.12123 -25.32703 -23.86725 -23.32506 -22.66182 -21.67582 -20.98822 -19.64874 -19.12241 -18.46417 -18.25624 -17.55575 -17.08562 -16.86540 -16.57207 -16.21058 -15.80512 -15.73489 -15.35011 -15.10693 -14.86300 -14.70557 -14.53433 -14.39075 -14.12491 -13.78365 -13.70617 -13.49561 -13.41275 -13.19943 -13.01878 -12.94791 -12.85751 -12.68934 -12.49674 -12.26768 -12.17690 -11.99090 -11.86882 -11.83496 -11.61097 -11.56779 -10.97860 -10.95368 -10.84035 -10.79263 -9.69012 -9.62635 -8.36970 -6.43233 1.28402 1.32532 1.33629 1.45114 1.63482 1.91797 2.15852 2.30308 2.97233 3.20333 3.27298 3.39355 3.50416 3.68011 3.78367 3.85889 3.95195 4.10237 4.16108 4.18052 4.21351 4.33449 4.40923 4.52658 4.55892 4.60185 4.62685 4.67324 4.72088 4.74593 4.84682 4.90395 4.94994 4.99381 5.00722 5.06283 5.12211 5.21258 5.25994 5.28583 5.36988 5.42732 5.65701 6.15186 6.18341 6.47441 6.62262 6.87754 7.09870 7.17054 7.21838 8.79747 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017607 B = 0.003387 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.881647 B = 8265.787631 C = 9028.203662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.111 3.889 3 H 0.031 0.969 4 O -0.578 6.578 5 C -0.122 4.122 6 C 0.516 3.484 7 O -0.569 6.569 8 N -0.604 5.604 9 C 0.088 3.912 10 C -0.112 4.112 11 C -0.116 4.116 12 C 0.132 3.868 13 C -0.119 4.119 14 C 0.095 3.905 15 N -0.616 5.616 16 C 0.149 3.851 17 C -0.007 4.007 18 C -0.539 4.539 19 H 0.034 0.966 20 C 0.009 3.991 21 N -0.946 5.946 22 Si 0.955 3.045 23 H -0.252 1.252 24 H -0.280 1.280 25 H -0.260 1.260 26 C 0.502 3.498 27 O -0.584 6.584 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.389 0.611 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.116 0.884 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.059 0.941 39 H 0.117 0.883 40 H 0.136 0.864 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.039 0.961 46 H 0.001 0.999 47 H 0.033 0.967 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.809 -24.491 -2.042 33.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.052 3.948 3 H 0.050 0.950 4 O -0.385 6.385 5 C -0.162 4.162 6 C 0.307 3.693 7 O -0.447 6.447 8 N -0.339 5.339 9 C -0.033 4.033 10 C -0.149 4.149 11 C -0.155 4.155 12 C 0.043 3.957 13 C -0.157 4.157 14 C -0.027 4.027 15 N -0.348 5.348 16 C 0.027 3.973 17 C -0.045 4.045 18 C -0.577 4.577 19 H 0.052 0.948 20 C -0.189 4.189 21 N -0.586 5.586 22 Si 0.777 3.223 23 H -0.176 1.176 24 H -0.205 1.205 25 H -0.184 1.184 26 C 0.289 3.711 27 O -0.464 6.464 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.238 0.762 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.134 0.866 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.078 0.922 39 H 0.135 0.865 40 H 0.154 0.846 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.102 0.898 45 H 0.057 0.943 46 H 0.019 0.981 47 H 0.052 0.948 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.357 -23.887 -1.762 32.765 hybrid contribution 0.471 1.555 -0.041 1.625 sum -21.886 -22.332 -1.803 31.320 Atomic orbital electron populations 1.22422 0.93234 1.03801 1.03694 1.21503 0.94027 0.94187 0.85108 0.95048 1.86501 1.78094 1.57269 1.16649 1.21821 0.89056 1.05611 0.99677 1.21127 0.91434 0.77039 0.79719 1.90723 1.71130 1.43123 1.39748 1.48558 1.05142 1.55064 1.25089 1.22801 0.98334 0.94321 0.87796 1.22864 0.90565 0.97193 1.04322 1.22636 1.02189 0.97952 0.92694 1.21297 0.83203 0.91493 0.99739 1.22935 0.94517 1.01173 0.97092 1.22429 0.98564 0.82325 0.99380 1.48585 1.26335 1.11782 1.48094 1.21138 0.92418 0.83904 0.99825 1.19684 0.94098 0.96104 0.94660 1.21260 1.16493 1.05395 1.14572 0.94792 1.25994 0.95327 0.97204 1.00328 1.70048 1.22799 1.26329 1.39379 0.85598 0.79238 0.79140 0.78299 1.17627 1.20515 1.18446 1.21602 0.80416 0.91386 0.77657 1.90612 1.63343 1.47638 1.44796 0.90470 0.91285 0.90548 0.76217 0.85442 0.85695 0.86564 0.91445 0.87610 0.86944 0.92245 0.86518 0.84561 0.90786 0.89647 0.88565 0.89838 0.94286 0.98064 0.94837 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 9.53 71.98 0.69 -1.23 16 2 C 0.11 2.13 3.13 30.59 0.10 2.22 16 3 H 0.03 0.78 7.96 -2.38 -0.02 0.76 16 4 O -0.58 -12.51 12.55 -135.19 -1.70 -14.21 16 5 C -0.12 -2.17 4.43 29.85 0.13 -2.03 16 6 C 0.52 14.55 7.17 87.66 0.63 15.18 16 7 O -0.57 -21.80 13.88 10.75 0.15 -21.65 16 8 N -0.60 -14.61 2.92 -769.14 -2.25 -16.86 16 9 C 0.09 1.19 6.72 86.84 0.58 1.78 16 10 C -0.11 -1.08 7.09 32.07 0.23 -0.85 16 11 C -0.12 -2.19 5.95 31.60 0.19 -2.00 16 12 C 0.13 3.57 0.73 3.28 0.00 3.58 16 13 C -0.12 -2.69 6.06 31.46 0.19 -2.50 16 14 C 0.10 2.61 7.36 86.87 0.64 3.25 16 15 N -0.62 -24.40 2.94 -818.13 -2.41 -26.81 16 16 C 0.15 7.01 5.88 86.38 0.51 7.52 16 17 C -0.01 -0.37 4.36 29.85 0.13 -0.24 16 18 C -0.54 -33.22 9.66 25.60 0.25 -32.98 16 19 H 0.03 2.28 7.99 -2.91 -0.02 2.26 16 20 C 0.01 0.55 5.47 84.66 0.46 1.02 16 21 N -0.95 -61.23 13.96 21.45 0.30 -60.93 16 22 Si 0.95 46.15 27.47 68.60 1.88 48.04 16 23 H -0.25 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.26 -12.25 6.54 99.48 0.65 -11.60 16 26 C 0.50 20.47 6.11 87.62 0.54 21.00 16 27 O -0.58 -29.55 17.62 -3.01 -0.05 -29.60 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.39 5.50 9.08 -74.06 -0.67 4.82 16 32 H 0.13 1.51 7.86 -2.39 -0.02 1.49 16 33 H 0.13 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.12 0.73 7.50 -2.38 -0.02 0.71 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 36 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.06 1.44 7.91 -2.39 -0.02 1.42 16 39 H 0.12 1.60 7.63 -2.39 -0.02 1.58 16 40 H 0.14 1.78 7.68 -2.39 -0.02 1.76 16 41 H 0.07 2.02 6.55 -2.39 -0.02 2.00 16 42 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 44 H 0.08 3.65 8.14 -2.38 -0.02 3.63 16 45 H 0.04 2.07 7.94 -2.39 -0.02 2.05 16 46 H 0.00 0.06 7.20 -2.39 -0.02 0.04 16 47 H 0.03 1.59 7.57 -2.38 -0.02 1.58 16 48 H 0.27 16.12 8.31 -92.71 -0.77 15.34 16 Total: -1.00 -94.61 384.35 1.41 -93.19 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.22 Total: 15.12 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 5.26 Total: 13.70 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -4.35 Total: -104.59 kcal Atomic # 8 Polarization: -63.86 SS G_CDS: -1.60 Total: -65.46 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.88 Total: 48.04 kcal Total: -94.61 1.41 -93.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270416389.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.020 kcal (2) G-P(sol) polarization free energy of solvation -94.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds