Wall clock time and date at job start Fri Apr 10 2020 18:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46505 * 119.99631 * 2 1 4 4 C 1.34781 * 120.00493 * 179.97438 * 2 1 3 5 5 O 1.21279 * 119.99847 * 359.97438 * 4 2 1 6 6 C 1.50698 * 119.99992 * 179.97438 * 4 2 1 7 7 C 1.52999 * 109.47019 * 179.97438 * 6 4 2 8 8 H 1.09001 * 109.96529 * 306.04410 * 7 6 4 9 9 C 1.53947 * 109.86669 * 185.00086 * 7 6 4 10 10 C 1.54458 * 104.65360 * 237.74490 * 9 7 6 11 11 H 1.09004 * 113.56728 * 217.91398 * 10 9 7 12 12 C 1.54093 * 108.98127 * 89.62910 * 10 9 7 13 13 N 1.47033 * 107.58589 * 231.39570 * 12 10 9 14 14 C 1.34777 * 125.70785 * 177.65523 * 13 12 10 15 15 O 1.21278 * 119.99854 * 359.72635 * 14 13 12 16 16 C 1.50703 * 120.00161 * 179.71942 * 14 13 12 17 17 C 1.53000 * 109.46912 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.46735 * 180.02562 * 17 16 14 19 19 H 1.07996 * 119.99928 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99611 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00327 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99743 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46725 * 60.00093 * 22 20 18 24 24 H 1.48505 * 109.46988 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47116 * 300.00069 * 22 20 18 26 26 C 1.47368 * 108.58906 * 357.39711 * 13 12 10 27 27 C 1.54676 * 105.11041 * 25.17581 * 26 13 12 28 28 H 1.09003 * 113.60702 * 200.53198 * 27 26 13 29 29 O 1.43549 * 109.86021 * 67.07864 * 7 6 4 30 30 H 1.08997 * 109.46890 * 269.99559 * 1 2 3 31 31 H 1.08995 * 109.47666 * 29.99671 * 1 2 3 32 32 H 1.08998 * 109.46889 * 150.00365 * 1 2 3 33 33 H 1.08999 * 109.46867 * 239.99852 * 3 2 1 34 34 H 1.08996 * 109.46908 * 0.02562 * 3 2 1 35 35 H 1.09005 * 109.46854 * 119.99985 * 3 2 1 36 36 H 1.09003 * 109.46965 * 60.00634 * 6 4 2 37 37 H 1.09000 * 109.47324 * 300.00424 * 6 4 2 38 38 H 1.08999 * 110.40128 * 118.95157 * 9 7 6 39 39 H 1.08996 * 110.50048 * 356.58649 * 9 7 6 40 40 H 1.09001 * 109.96057 * 111.80875 * 12 10 9 41 41 H 1.09005 * 109.70775 * 350.83906 * 12 10 9 42 42 H 1.09002 * 109.47152 * 60.00245 * 16 14 13 43 43 H 1.09001 * 109.46980 * 300.00345 * 16 14 13 44 44 H 1.09001 * 109.47194 * 299.99742 * 17 16 14 45 45 H 1.08992 * 109.47399 * 59.99914 * 17 16 14 46 46 H 0.97000 * 120.00354 * 180.02562 * 21 20 18 47 47 H 1.09003 * 110.31474 * 144.08350 * 26 13 12 48 48 H 1.09002 * 110.31253 * 266.16503 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1390 -1.1672 0.0005 5 8 1.5327 -2.2175 0.0015 6 6 3.6460 -1.1670 -0.0001 7 6 4.1561 -2.6095 0.0014 8 1 3.7121 -3.1604 0.8305 9 6 5.6904 -2.6217 0.1270 10 6 6.1787 -3.3867 -1.1229 11 1 7.0336 -4.0350 -0.9306 12 6 6.3987 -2.3826 -2.2708 13 7 5.6735 -2.8861 -3.4466 14 6 5.5837 -2.2667 -4.6402 15 8 6.1270 -1.1958 -4.8100 16 6 4.8085 -2.9049 -5.7640 17 6 4.8643 -2.0029 -6.9986 18 6 4.0885 -2.6409 -8.1221 19 1 3.6046 -3.5944 -7.9708 20 6 3.9967 -2.0071 -9.3432 21 7 4.5856 -0.8457 -9.5273 22 14 3.0357 -2.7982 -10.7361 23 1 1.6220 -2.9821 -10.3201 24 1 3.0887 -1.9221 -11.9340 25 1 3.6319 -4.1188 -11.0612 26 6 5.0662 -4.1843 -3.1035 27 6 4.8905 -4.1538 -1.5671 28 1 4.7896 -5.1426 -1.1196 29 8 3.8224 -3.2460 -1.2413 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8899 -0.5137 32 1 -0.3633 -0.8900 -0.5138 33 1 2.8241 1.3265 -0.8900 34 1 1.4891 2.0972 0.0005 35 1 2.8241 1.3266 0.8900 36 1 4.0096 -0.6527 0.8895 37 1 4.0089 -0.6537 -0.8905 38 1 5.9931 -3.1440 1.0345 39 1 6.0815 -1.6044 0.1266 40 1 7.4619 -2.3041 -2.4978 41 1 6.0074 -1.4061 -1.9852 42 1 3.7708 -3.0399 -5.4587 43 1 5.2461 -3.8743 -6.0025 44 1 4.4270 -1.0334 -6.7603 45 1 5.9020 -1.8683 -7.3036 46 1 4.5207 -0.3997 -10.3862 47 1 4.0981 -4.2904 -3.5931 48 1 5.7280 -5.0002 -3.3942 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271768602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:53 Heat of formation + Delta-G solvation = -110.686389 kcal Electronic energy + Delta-G solvation = -28512.508153 eV Core-core repulsion = 24567.595270 eV Total energy + Delta-G solvation = -3944.912883 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.99692 -39.79319 -38.53392 -35.84595 -35.48146 -33.44311 -33.05348 -31.76065 -30.74975 -29.10346 -28.17333 -27.31056 -26.04706 -25.10659 -23.08656 -21.61582 -21.29750 -20.65055 -19.40225 -18.72733 -17.45900 -16.94864 -16.69414 -16.40499 -16.23882 -15.81248 -15.57812 -15.20278 -14.70819 -14.51067 -14.34508 -13.79095 -13.65127 -13.38760 -13.18780 -13.01617 -12.93323 -12.79965 -12.64321 -12.28754 -12.14818 -12.09606 -12.06039 -12.01694 -11.62037 -11.38437 -11.22913 -11.04357 -10.87757 -10.75952 -10.57092 -9.91556 -9.89369 -9.83030 -9.58948 -9.13192 -8.96322 -8.90373 -8.34572 -8.26053 -5.91915 -3.95992 2.52028 2.79622 3.27914 3.29575 3.37890 3.42017 3.44466 3.49995 4.08894 4.19346 4.36786 4.51159 4.57204 4.61420 4.77804 4.82117 4.87049 4.94459 5.05762 5.09826 5.18244 5.22341 5.31423 5.35965 5.38323 5.40202 5.42887 5.50084 5.53356 5.61365 5.62450 5.75715 5.80357 5.86776 5.92409 6.21150 6.28394 6.32182 6.59718 6.87280 6.95883 7.11762 7.78694 7.89578 7.91175 8.03716 8.11614 8.43319 8.79959 9.12139 9.67159 11.19097 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.011449 B = 0.003223 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.983017 B = 8684.217321 C = 9993.585863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.628 5.628 3 C 0.078 3.922 4 C 0.516 3.484 5 O -0.525 6.525 6 C -0.141 4.141 7 C 0.096 3.904 8 H 0.076 0.924 9 C -0.145 4.145 10 C -0.133 4.133 11 H 0.109 0.891 12 C 0.119 3.881 13 N -0.624 5.624 14 C 0.529 3.471 15 O -0.535 6.535 16 C -0.125 4.125 17 C 0.038 3.962 18 C -0.526 4.526 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.891 5.891 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.105 3.895 27 C 0.063 3.937 28 H 0.104 0.896 29 O -0.342 6.342 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.023 0.977 45 H 0.023 0.977 46 H 0.261 0.739 47 H 0.089 0.911 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.254 -1.542 26.793 26.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.364 5.364 3 C -0.065 4.065 4 C 0.304 3.696 5 O -0.401 6.401 6 C -0.181 4.181 7 C 0.038 3.962 8 H 0.094 0.906 9 C -0.183 4.183 10 C -0.152 4.152 11 H 0.128 0.872 12 C -0.005 4.005 13 N -0.361 5.361 14 C 0.320 3.680 15 O -0.411 6.411 16 C -0.164 4.164 17 C 0.001 3.999 18 C -0.564 4.564 19 H 0.074 0.926 20 C -0.143 4.143 21 N -0.529 5.529 22 Si 0.721 3.279 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.018 4.018 27 C 0.004 3.996 28 H 0.121 0.879 29 O -0.260 6.260 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.041 0.959 45 H 0.041 0.959 46 H 0.071 0.929 47 H 0.108 0.892 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.467 -1.260 26.324 26.359 hybrid contribution -0.343 -0.214 -0.610 0.732 sum -0.810 -1.474 25.715 25.770 Atomic orbital electron populations 1.21650 0.79209 1.03365 1.01505 1.47789 1.07179 1.06527 1.74881 1.21821 0.97453 0.85258 1.01948 1.20557 0.90150 0.83134 0.75783 1.90720 1.70177 1.30747 1.48413 1.21975 0.92717 0.98436 1.04928 1.22394 0.93198 0.92034 0.88622 0.90618 1.23013 0.95086 1.01967 0.98209 1.23677 0.99205 0.97513 0.94756 0.87238 1.21801 0.96970 0.96794 0.84885 1.48596 1.53719 1.21885 1.11882 1.21295 0.80199 0.84777 0.81717 1.90661 1.47075 1.21804 1.81536 1.21856 0.98780 1.01240 0.94571 1.18895 0.97987 0.94165 0.88892 1.21193 1.32824 1.05778 0.96644 0.92647 1.25015 0.95744 0.94922 0.98652 1.69989 1.43581 1.15175 1.24201 0.86654 0.80526 0.79175 0.81592 1.20243 1.21296 1.20237 1.22263 0.99575 0.86500 0.93499 1.24207 0.85724 0.94249 0.95395 0.87886 1.88930 1.42070 1.56582 1.38455 0.92993 0.91256 0.90438 0.91676 0.90340 0.92101 0.87861 0.87909 0.90036 0.89826 0.91787 0.91706 0.90242 0.90359 0.95903 0.95862 0.92944 0.89249 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 10.41 59.85 0.62 1.40 16 2 N -0.63 -6.38 3.27 -189.52 -0.62 -7.00 16 3 C 0.08 0.52 9.74 59.85 0.58 1.10 16 4 C 0.52 6.44 7.57 -10.98 -0.08 6.35 16 5 O -0.53 -8.58 15.09 -5.96 -0.09 -8.67 16 6 C -0.14 -1.34 4.00 -27.88 -0.11 -1.45 16 7 C 0.10 0.97 2.92 -26.24 -0.08 0.90 16 8 H 0.08 0.78 7.94 -51.93 -0.41 0.37 16 9 C -0.14 -1.06 5.92 -25.47 -0.15 -1.21 16 10 C -0.13 -1.17 4.23 -87.47 -0.37 -1.54 16 11 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 12 C 0.12 1.52 6.21 -3.18 -0.02 1.50 16 13 N -0.62 -9.93 3.30 -170.84 -0.56 -10.50 16 14 C 0.53 11.05 7.85 -10.98 -0.09 10.96 16 15 O -0.54 -13.27 16.31 5.56 0.09 -13.18 16 16 C -0.12 -2.72 4.64 -27.88 -0.13 -2.85 16 17 C 0.04 1.07 4.26 -27.88 -0.12 0.95 16 18 C -0.53 -15.36 9.11 -34.44 -0.31 -15.68 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -27.93 13.29 55.43 0.74 -27.20 16 22 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.11 1.31 6.32 -2.69 -0.02 1.29 16 27 C 0.06 0.66 4.65 -24.04 -0.11 0.55 16 28 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 29 O -0.34 -4.62 9.91 -46.75 -0.46 -5.08 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.48 7.92 -51.93 -0.41 0.07 16 32 H 0.08 0.86 7.42 -51.93 -0.39 0.48 16 33 H 0.06 0.47 7.85 -51.93 -0.41 0.06 16 34 H 0.08 0.39 7.79 -51.93 -0.40 -0.01 16 35 H 0.06 0.29 7.85 -51.93 -0.41 -0.12 16 36 H 0.10 0.63 7.86 -51.93 -0.41 0.22 16 37 H 0.10 1.06 7.86 -51.93 -0.41 0.66 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.55 7.14 -51.93 -0.37 0.18 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.87 7.37 -51.93 -0.38 0.49 16 42 H 0.08 1.65 7.84 -51.93 -0.41 1.24 16 43 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 45 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 46 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 47 H 0.09 1.21 7.45 -51.93 -0.39 0.82 16 48 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 386.86 15.07 5.83 5.83 Total: -1.00 -39.20 386.86 -8.72 -47.91 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -8.13 Total: -3.11 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -0.48 Total: 3.89 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -0.45 Total: -44.69 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.46 Total: -26.93 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -39.20 -8.72 -47.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271768602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.773 kcal (2) G-P(sol) polarization free energy of solvation -39.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds