Wall clock time and date at job start Fri Apr 10 2020 18:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46505 * 119.99631 * 2 1 4 4 C 1.34781 * 120.00493 * 179.97438 * 2 1 3 5 5 O 1.21279 * 119.99847 * 359.97438 * 4 2 1 6 6 C 1.50698 * 119.99992 * 179.97438 * 4 2 1 7 7 C 1.52999 * 109.47019 * 179.97438 * 6 4 2 8 8 H 1.09001 * 109.96529 * 306.04410 * 7 6 4 9 9 C 1.53947 * 109.86669 * 185.00086 * 7 6 4 10 10 C 1.54458 * 104.65360 * 237.74490 * 9 7 6 11 11 H 1.09004 * 113.56728 * 217.91398 * 10 9 7 12 12 C 1.54093 * 108.98127 * 89.62910 * 10 9 7 13 13 N 1.47033 * 107.58589 * 231.39570 * 12 10 9 14 14 C 1.34777 * 125.70785 * 177.65523 * 13 12 10 15 15 O 1.21278 * 119.99854 * 359.72635 * 14 13 12 16 16 C 1.50703 * 120.00161 * 179.71942 * 14 13 12 17 17 C 1.53000 * 109.46912 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.46735 * 180.02562 * 17 16 14 19 19 H 1.07996 * 119.99928 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99611 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00327 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99743 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46725 * 60.00093 * 22 20 18 24 24 H 1.48505 * 109.46988 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47116 * 300.00069 * 22 20 18 26 26 C 1.47368 * 108.58906 * 357.39711 * 13 12 10 27 27 C 1.54676 * 105.11041 * 25.17581 * 26 13 12 28 28 H 1.09003 * 113.60702 * 200.53198 * 27 26 13 29 29 O 1.43549 * 109.86021 * 67.07864 * 7 6 4 30 30 H 1.08997 * 109.46890 * 269.99559 * 1 2 3 31 31 H 1.08995 * 109.47666 * 29.99671 * 1 2 3 32 32 H 1.08998 * 109.46889 * 150.00365 * 1 2 3 33 33 H 1.08999 * 109.46867 * 239.99852 * 3 2 1 34 34 H 1.08996 * 109.46908 * 0.02562 * 3 2 1 35 35 H 1.09005 * 109.46854 * 119.99985 * 3 2 1 36 36 H 1.09003 * 109.46965 * 60.00634 * 6 4 2 37 37 H 1.09000 * 109.47324 * 300.00424 * 6 4 2 38 38 H 1.08999 * 110.40128 * 118.95157 * 9 7 6 39 39 H 1.08996 * 110.50048 * 356.58649 * 9 7 6 40 40 H 1.09001 * 109.96057 * 111.80875 * 12 10 9 41 41 H 1.09005 * 109.70775 * 350.83906 * 12 10 9 42 42 H 1.09002 * 109.47152 * 60.00245 * 16 14 13 43 43 H 1.09001 * 109.46980 * 300.00345 * 16 14 13 44 44 H 1.09001 * 109.47194 * 299.99742 * 17 16 14 45 45 H 1.08992 * 109.47399 * 59.99914 * 17 16 14 46 46 H 0.97000 * 120.00354 * 180.02562 * 21 20 18 47 47 H 1.09003 * 110.31474 * 144.08350 * 26 13 12 48 48 H 1.09002 * 110.31253 * 266.16503 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1390 -1.1672 0.0005 5 8 1.5327 -2.2175 0.0015 6 6 3.6460 -1.1670 -0.0001 7 6 4.1561 -2.6095 0.0014 8 1 3.7121 -3.1604 0.8305 9 6 5.6904 -2.6217 0.1270 10 6 6.1787 -3.3867 -1.1229 11 1 7.0336 -4.0350 -0.9306 12 6 6.3987 -2.3826 -2.2708 13 7 5.6735 -2.8861 -3.4466 14 6 5.5837 -2.2667 -4.6402 15 8 6.1270 -1.1958 -4.8100 16 6 4.8085 -2.9049 -5.7640 17 6 4.8643 -2.0029 -6.9986 18 6 4.0885 -2.6409 -8.1221 19 1 3.6046 -3.5944 -7.9708 20 6 3.9967 -2.0071 -9.3432 21 7 4.5856 -0.8457 -9.5273 22 14 3.0357 -2.7982 -10.7361 23 1 1.6220 -2.9821 -10.3201 24 1 3.0887 -1.9221 -11.9340 25 1 3.6319 -4.1188 -11.0612 26 6 5.0662 -4.1843 -3.1035 27 6 4.8905 -4.1538 -1.5671 28 1 4.7896 -5.1426 -1.1196 29 8 3.8224 -3.2460 -1.2413 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8899 -0.5137 32 1 -0.3633 -0.8900 -0.5138 33 1 2.8241 1.3265 -0.8900 34 1 1.4891 2.0972 0.0005 35 1 2.8241 1.3266 0.8900 36 1 4.0096 -0.6527 0.8895 37 1 4.0089 -0.6537 -0.8905 38 1 5.9931 -3.1440 1.0345 39 1 6.0815 -1.6044 0.1266 40 1 7.4619 -2.3041 -2.4978 41 1 6.0074 -1.4061 -1.9852 42 1 3.7708 -3.0399 -5.4587 43 1 5.2461 -3.8743 -6.0025 44 1 4.4270 -1.0334 -6.7603 45 1 5.9020 -1.8683 -7.3036 46 1 4.5207 -0.3997 -10.3862 47 1 4.0981 -4.2904 -3.5931 48 1 5.7280 -5.0002 -3.3942 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271768602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:52 Heat of formation + Delta-G solvation = -138.684761 kcal Electronic energy + Delta-G solvation = -28513.722253 eV Core-core repulsion = 24567.595270 eV Total energy + Delta-G solvation = -3946.126984 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.92827 -40.79834 -39.93452 -36.91820 -36.47353 -35.61049 -33.89670 -33.20315 -32.34324 -30.03272 -29.05514 -28.38780 -27.39063 -26.35439 -24.36264 -23.09875 -22.29584 -21.55432 -20.29447 -20.11668 -18.88126 -18.21254 -17.74645 -17.51361 -17.30882 -17.07677 -16.64078 -16.47542 -16.43621 -15.92732 -15.45900 -15.05018 -14.45255 -14.39965 -14.36419 -14.20028 -13.84409 -13.80221 -13.60617 -13.54553 -13.50302 -13.34933 -13.08745 -12.85828 -12.84287 -12.80267 -12.53919 -12.37813 -12.14525 -11.98746 -11.94469 -11.63953 -11.52677 -11.35451 -10.88766 -10.84969 -10.58295 -10.51873 -9.70407 -9.62632 -8.19910 -6.34526 1.40054 1.45172 1.52876 1.61204 1.64597 2.00323 2.07082 2.41823 2.72286 3.12464 3.33091 3.39809 3.59819 3.82842 3.85969 3.97412 4.07526 4.15297 4.21370 4.28164 4.37937 4.41511 4.42283 4.43295 4.46420 4.54199 4.62002 4.65576 4.67879 4.73011 4.80467 4.85513 4.88430 4.92954 4.97021 5.01943 5.08261 5.21947 5.40181 5.48055 5.48682 5.58051 5.81212 6.12222 6.14855 6.32309 6.45057 6.82555 7.15647 7.21062 7.35541 8.92719 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.011449 B = 0.003223 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.983017 B = 8684.217321 C = 9993.585863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.632 5.632 3 C 0.073 3.927 4 C 0.502 3.498 5 O -0.575 6.575 6 C -0.136 4.136 7 C 0.089 3.911 8 H 0.073 0.927 9 C -0.134 4.134 10 C -0.114 4.114 11 H 0.145 0.855 12 C 0.109 3.891 13 N -0.616 5.616 14 C 0.524 3.476 15 O -0.589 6.589 16 C -0.112 4.112 17 C 0.047 3.953 18 C -0.547 4.547 19 H 0.073 0.927 20 C -0.004 4.004 21 N -0.936 5.936 22 Si 0.975 3.025 23 H -0.265 1.265 24 H -0.284 1.284 25 H -0.261 1.261 26 C 0.093 3.907 27 C 0.063 3.937 28 H 0.136 0.864 29 O -0.383 6.383 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.142 0.858 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.089 0.911 43 H 0.102 0.898 44 H -0.021 1.021 45 H -0.015 1.015 46 H 0.264 0.736 47 H 0.074 0.926 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.015 -3.227 28.720 28.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.366 5.366 3 C -0.069 4.069 4 C 0.292 3.708 5 O -0.455 6.455 6 C -0.175 4.175 7 C 0.031 3.969 8 H 0.091 0.909 9 C -0.172 4.172 10 C -0.133 4.133 11 H 0.163 0.837 12 C -0.013 4.013 13 N -0.350 5.350 14 C 0.315 3.685 15 O -0.470 6.470 16 C -0.152 4.152 17 C 0.009 3.991 18 C -0.585 4.585 19 H 0.091 0.909 20 C -0.202 4.202 21 N -0.576 5.576 22 Si 0.798 3.202 23 H -0.189 1.189 24 H -0.210 1.210 25 H -0.185 1.185 26 C -0.029 4.029 27 C 0.006 3.994 28 H 0.153 0.847 29 O -0.303 6.303 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.159 0.841 37 H 0.109 0.891 38 H 0.132 0.868 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.120 0.880 44 H -0.002 1.002 45 H 0.004 0.996 46 H 0.073 0.927 47 H 0.093 0.907 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.199 -2.962 28.317 28.472 hybrid contribution -0.455 0.365 -1.144 1.284 sum -0.654 -2.597 27.173 27.305 Atomic orbital electron populations 1.21730 0.79025 1.03025 1.02333 1.48021 1.07767 1.07241 1.73526 1.22053 0.97974 0.84139 1.02755 1.21184 0.91487 0.83040 0.75119 1.90683 1.71301 1.32522 1.50987 1.22042 0.90598 0.98847 1.06019 1.22577 0.95223 0.91766 0.87319 0.90922 1.23016 0.92557 1.02936 0.98652 1.23718 0.99618 0.96580 0.93389 0.83725 1.22111 0.96395 0.97819 0.84995 1.48486 1.52719 1.22726 1.11047 1.20955 0.80015 0.84298 0.83215 1.90630 1.49501 1.24013 1.82843 1.21577 1.00014 1.00758 0.92835 1.18653 0.95101 0.93555 0.91779 1.21653 1.33044 1.06535 0.97244 0.90918 1.26133 0.96715 0.95353 1.02008 1.70167 1.45182 1.17059 1.25183 0.85363 0.79075 0.78472 0.77273 1.18943 1.20952 1.18513 1.22642 0.99334 0.85339 0.95547 1.24432 0.85864 0.95537 0.93613 0.84677 1.88909 1.43737 1.57596 1.40028 0.91584 0.89066 0.93257 0.92522 0.88447 0.89570 0.84074 0.89096 0.86780 0.88807 0.91729 0.92814 0.89244 0.88004 1.00230 0.99637 0.92732 0.90718 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.48 10.41 127.77 1.33 2.81 16 2 N -0.63 -12.59 3.27 -871.89 -2.85 -15.45 16 3 C 0.07 0.86 9.74 127.77 1.24 2.10 16 4 C 0.50 12.60 7.57 87.66 0.66 13.27 16 5 O -0.58 -19.47 15.09 7.99 0.12 -19.35 16 6 C -0.14 -2.43 4.00 29.85 0.12 -2.31 16 7 C 0.09 1.64 2.92 30.91 0.09 1.73 16 8 H 0.07 1.38 7.94 -2.39 -0.02 1.36 16 9 C -0.13 -1.46 5.92 31.41 0.19 -1.27 16 10 C -0.11 -1.61 4.23 -8.76 -0.04 -1.65 16 11 H 0.14 1.13 8.14 -2.38 -0.02 1.11 16 12 C 0.11 2.65 6.21 86.65 0.54 3.19 16 13 N -0.62 -19.42 3.30 -812.81 -2.68 -22.09 16 14 C 0.52 22.72 7.85 87.66 0.69 23.40 16 15 O -0.59 -31.00 16.31 -3.02 -0.05 -31.04 16 16 C -0.11 -5.04 4.64 29.85 0.14 -4.90 16 17 C 0.05 2.76 4.26 29.85 0.13 2.89 16 18 C -0.55 -32.62 9.11 25.60 0.23 -32.38 16 19 H 0.07 3.98 7.74 -2.91 -0.02 3.96 16 20 C 0.00 -0.27 5.46 84.66 0.46 0.20 16 21 N -0.94 -60.74 13.29 21.45 0.28 -60.46 16 22 Si 0.97 45.58 29.54 68.60 2.03 47.61 16 23 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 25 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 26 C 0.09 2.17 6.32 86.78 0.55 2.72 16 27 C 0.06 1.16 4.65 32.34 0.15 1.31 16 28 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 29 O -0.38 -10.01 9.91 -137.97 -1.37 -11.38 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.20 7.92 -2.39 -0.02 1.18 16 32 H 0.05 1.17 7.42 -2.39 -0.02 1.15 16 33 H 0.06 0.78 7.85 -2.39 -0.02 0.76 16 34 H 0.10 0.78 7.79 -2.39 -0.02 0.76 16 35 H 0.09 0.60 7.85 -2.38 -0.02 0.58 16 36 H 0.14 1.32 7.86 -2.39 -0.02 1.31 16 37 H 0.09 1.87 7.86 -2.39 -0.02 1.85 16 38 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.09 0.88 7.14 -2.39 -0.02 0.86 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.05 1.43 7.37 -2.38 -0.02 1.41 16 42 H 0.09 3.80 7.84 -2.39 -0.02 3.78 16 43 H 0.10 4.04 8.14 -2.39 -0.02 4.02 16 44 H -0.02 -1.38 8.10 -2.39 -0.02 -1.40 16 45 H -0.01 -0.97 8.10 -2.39 -0.02 -0.99 16 46 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 47 H 0.07 1.97 7.45 -2.39 -0.02 1.95 16 48 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -92.61 386.86 2.90 -89.72 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.93 Total: 11.35 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 6.48 Total: 11.09 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -5.25 Total: -98.00 kcal Atomic # 8 Polarization: -60.48 SS G_CDS: -1.30 Total: -61.78 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -92.61 2.90 -89.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271768602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.967 kcal (2) G-P(sol) polarization free energy of solvation -92.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds