Wall clock time and date at job start Fri Apr 10 2020 18:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 120.00071 * 2 1 4 4 C 1.34775 * 119.99912 * 180.02562 * 2 1 3 5 5 O 1.21284 * 120.00112 * 5.57044 * 4 2 1 6 6 C 1.50705 * 119.99833 * 185.57267 * 4 2 1 7 7 H 1.08997 * 109.56938 * 335.22208 * 6 4 2 8 8 C 1.53294 * 109.56754 * 214.97712 * 6 4 2 9 9 O 1.42903 * 109.30629 * 184.99999 * 8 6 4 10 10 C 1.42889 * 114.39680 * 63.03747 * 9 8 6 11 11 C 1.53286 * 109.31735 * 296.97442 * 10 9 8 12 12 C 1.52743 * 109.56922 * 95.58987 * 6 4 2 13 13 C 1.53414 * 113.69319 * 41.50849 * 12 6 4 14 14 N 1.47675 * 85.95089 * 222.08106 * 13 12 6 15 15 C 1.34779 * 134.44946 * 204.19981 * 14 13 12 16 16 O 1.21279 * 119.99943 * 180.02562 * 15 14 13 17 17 C 1.50700 * 119.99606 * 0.06332 * 15 14 13 18 18 C 1.53009 * 109.46669 * 179.97438 * 17 15 14 19 19 C 1.50700 * 109.46669 * 179.97438 * 18 17 15 20 20 H 1.07991 * 120.00624 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99350 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00377 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99676 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47019 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47346 * 119.99720 * 23 21 19 26 26 H 1.48499 * 109.47174 * 239.99871 * 23 21 19 27 27 C 1.47686 * 91.10199 * 24.24968 * 14 13 12 28 28 H 1.09003 * 109.46996 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47099 * 240.00152 * 1 2 3 30 30 H 1.08994 * 109.47560 * 119.99296 * 1 2 3 31 31 H 1.09003 * 109.46962 * 85.41517 * 3 2 1 32 32 H 1.09002 * 109.47287 * 205.40947 * 3 2 1 33 33 H 1.08992 * 109.47216 * 325.41268 * 3 2 1 34 34 H 1.09000 * 109.50037 * 304.94425 * 8 6 4 35 35 H 1.08999 * 109.49834 * 65.05089 * 8 6 4 36 36 H 1.08999 * 109.49381 * 56.92135 * 10 9 8 37 37 H 1.08994 * 109.49692 * 176.98259 * 10 9 8 38 38 H 1.09000 * 109.56730 * 174.98424 * 11 10 9 39 39 H 1.09001 * 109.56931 * 295.22121 * 11 10 9 40 40 H 1.09008 * 113.79156 * 336.33862 * 13 12 6 41 41 H 1.09001 * 113.80082 * 107.81830 * 13 12 6 42 42 H 1.08993 * 109.47465 * 299.99567 * 17 15 14 43 43 H 1.08994 * 109.47449 * 60.00497 * 17 15 14 44 44 H 1.08993 * 109.46899 * 300.00006 * 18 17 15 45 45 H 1.09003 * 109.46684 * 59.99962 * 18 17 15 46 46 H 0.96992 * 119.99829 * 179.97438 * 22 21 19 47 47 H 1.09000 * 113.79260 * 221.48578 * 27 14 13 48 48 H 1.08995 * 113.79849 * 90.00673 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5367 -2.2150 -0.1029 6 6 3.6405 -1.1703 0.1262 7 1 4.0386 -0.2186 -0.2258 8 6 4.2242 -2.3129 -0.7127 9 8 5.6351 -2.3841 -0.4974 10 6 6.0124 -2.6923 0.8459 11 6 5.5338 -1.5724 1.7766 12 6 4.0302 -1.3816 1.5879 13 6 3.1798 -2.4373 2.3062 14 7 3.1679 -1.4999 3.4472 15 6 2.9999 -1.6346 4.7777 16 8 3.0405 -0.6582 5.4960 17 6 2.7625 -2.9986 5.3728 18 6 2.6064 -2.8730 6.8897 19 6 2.3683 -4.2369 7.4848 20 1 2.3325 -5.1064 6.8453 21 6 2.1964 -4.3747 8.8459 22 7 2.2405 -3.3160 9.6248 23 14 1.9020 -6.0654 9.5837 24 1 1.8977 -7.0834 8.5024 25 1 2.9825 -6.3773 10.5534 26 1 0.5913 -6.0796 10.2815 27 6 3.4126 -0.3555 2.5463 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3634 -0.5137 -0.8900 31 1 2.3080 1.6245 1.0244 32 1 3.1831 1.1193 -0.4410 33 1 1.6465 2.0064 -0.5833 34 1 3.7630 -3.2548 -0.4156 35 1 4.0261 -2.1272 -1.7683 36 1 5.5541 -3.6348 1.1452 37 1 7.0971 -2.7793 0.9082 38 1 5.7403 -1.8447 2.8117 39 1 6.0547 -0.6467 1.5319 40 1 2.1997 -2.5937 1.8553 41 1 3.7109 -3.3678 2.5069 42 1 1.8549 -3.4274 4.9481 43 1 3.6101 -3.6458 5.1476 44 1 3.5142 -2.4444 7.3141 45 1 1.7590 -2.2256 7.1153 46 1 2.1192 -3.4129 10.5822 47 1 4.1286 0.3671 2.9379 48 1 2.5021 0.1082 2.1670 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271769397.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:04 Heat of formation + Delta-G solvation = -101.130794 kcal Electronic energy + Delta-G solvation = -29177.621320 eV Core-core repulsion = 25233.122798 eV Total energy + Delta-G solvation = -3944.498521 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.82282 -40.61706 -39.67005 -38.40762 -36.69290 -35.62494 -33.76110 -32.99387 -32.44692 -29.40898 -29.09243 -27.48094 -27.31924 -27.15057 -24.91415 -24.27200 -22.99987 -21.15914 -20.21459 -19.24606 -18.87977 -18.36254 -17.91701 -17.60397 -17.31878 -16.82844 -16.69198 -16.49059 -16.40666 -16.33589 -15.62775 -15.40380 -14.86905 -14.69306 -14.43523 -14.19960 -13.90833 -13.78580 -13.67978 -13.64811 -13.51111 -13.38885 -13.33979 -13.10050 -12.87886 -12.78921 -12.48790 -12.47435 -12.05215 -12.02715 -11.84825 -11.70294 -11.50518 -11.33154 -10.86139 -10.72536 -10.61780 -10.50860 -9.79685 -9.72242 -8.22005 -6.36606 1.38722 1.40013 1.41220 1.54081 1.55155 1.78068 1.94592 2.39793 2.85262 2.92315 3.10705 3.33803 3.42887 3.65084 3.74761 3.79135 3.89009 4.06454 4.23962 4.29884 4.32477 4.36220 4.37653 4.42088 4.43016 4.46045 4.50841 4.51209 4.62374 4.66880 4.74408 4.78444 4.80575 4.88289 4.94098 5.01414 5.04117 5.08581 5.14401 5.41598 5.43401 5.54579 5.78848 6.12352 6.16833 6.25866 6.53094 6.80985 7.02936 7.12801 7.33704 8.90985 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.003118 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.628976 B = 8977.520575 C = 9592.643018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.620 5.620 3 C 0.059 3.941 4 C 0.516 3.484 5 O -0.568 6.568 6 C -0.123 4.123 7 H 0.138 0.862 8 C 0.080 3.920 9 O -0.381 6.381 10 C 0.058 3.942 11 C -0.123 4.123 12 C -0.064 4.064 13 C 0.097 3.903 14 N -0.646 5.646 15 C 0.533 3.467 16 O -0.586 6.586 17 C -0.112 4.112 18 C 0.046 3.954 19 C -0.545 4.545 20 H 0.072 0.928 21 C -0.005 4.005 22 N -0.936 5.936 23 Si 0.975 3.025 24 H -0.255 1.255 25 H -0.277 1.277 26 H -0.279 1.279 27 C 0.104 3.896 28 H 0.105 0.895 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.112 0.888 36 H 0.053 0.947 37 H 0.118 0.882 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.099 0.901 44 H -0.014 1.014 45 H -0.019 1.019 46 H 0.264 0.736 47 H 0.089 0.911 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.818 7.919 -28.795 30.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.352 5.352 3 C -0.082 4.082 4 C 0.304 3.696 5 O -0.448 6.448 6 C -0.145 4.145 7 H 0.155 0.845 8 C 0.003 3.997 9 O -0.300 6.300 10 C -0.018 4.018 11 C -0.161 4.161 12 C -0.065 4.065 13 C -0.025 4.025 14 N -0.382 5.382 15 C 0.325 3.675 16 O -0.466 6.466 17 C -0.152 4.152 18 C 0.008 3.992 19 C -0.583 4.583 20 H 0.090 0.910 21 C -0.202 4.202 22 N -0.576 5.576 23 Si 0.799 3.201 24 H -0.178 1.178 25 H -0.202 1.202 26 H -0.205 1.205 27 C -0.018 4.018 28 H 0.123 0.877 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.130 0.870 36 H 0.072 0.928 37 H 0.136 0.864 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.117 0.883 44 H 0.005 0.995 45 H 0.000 1.000 46 H 0.073 0.927 47 H 0.107 0.893 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.601 7.973 -28.228 29.691 hybrid contribution -0.850 -0.438 1.384 1.683 sum 3.750 7.535 -26.844 28.132 Atomic orbital electron populations 1.21715 0.78635 1.04008 1.01404 1.47986 1.07731 1.07059 1.72447 1.22336 0.98570 0.84102 1.03224 1.20661 0.90115 0.83339 0.75440 1.90700 1.71059 1.32474 1.50523 1.21941 0.91475 1.05036 0.96016 0.84460 1.22437 0.81071 0.96115 1.00075 1.87925 1.21964 1.91452 1.28615 1.22773 1.01932 0.96083 0.81043 1.21949 0.91032 1.02085 1.01039 1.21851 0.97117 0.95640 0.91898 1.23675 1.00890 0.95321 0.82642 1.50125 1.71709 1.12603 1.03750 1.20984 0.74236 0.91808 0.80483 1.90642 1.52824 1.42567 1.60593 1.21556 1.03497 0.92628 0.97492 1.18671 0.94758 0.95808 0.89930 1.21688 1.49531 0.93920 0.93159 0.90955 1.26134 0.94702 1.01503 0.97884 1.70176 1.50752 1.31662 1.04972 0.85253 0.77758 0.78620 0.78493 1.17846 1.20235 1.20457 1.23537 1.00235 0.91317 0.86683 0.87655 0.94139 0.92145 0.91938 0.88501 0.88389 0.92700 0.86997 0.92826 0.86385 0.90843 0.88143 0.89184 0.88861 0.89167 0.88256 0.99545 1.00047 0.92708 0.89268 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 10.17 127.77 1.30 2.50 16 2 N -0.62 -8.86 2.69 -871.89 -2.34 -11.20 16 3 C 0.06 0.39 9.37 127.77 1.20 1.59 16 4 C 0.52 9.62 4.93 87.66 0.43 10.05 16 5 O -0.57 -14.93 14.46 -3.04 -0.04 -14.98 16 6 C -0.12 -1.73 2.02 -11.53 -0.02 -1.76 16 7 H 0.14 1.14 5.58 -2.39 -0.01 1.13 16 8 C 0.08 1.20 5.83 72.08 0.42 1.62 16 9 O -0.38 -5.98 10.72 -148.98 -1.60 -7.58 16 10 C 0.06 0.81 6.79 72.08 0.49 1.30 16 11 C -0.12 -1.89 5.27 30.60 0.16 -1.73 16 12 C -0.06 -1.14 0.73 -52.05 -0.04 -1.17 16 13 C 0.10 2.36 7.32 86.29 0.63 3.00 16 14 N -0.65 -20.20 3.47 -844.13 -2.93 -23.13 16 15 C 0.53 22.80 8.06 87.66 0.71 23.51 16 16 O -0.59 -30.55 16.71 -3.03 -0.05 -30.60 16 17 C -0.11 -4.99 5.39 29.85 0.16 -4.83 16 18 C 0.05 2.68 4.26 29.85 0.13 2.81 16 19 C -0.55 -32.22 9.11 25.60 0.23 -31.99 16 20 H 0.07 3.95 7.74 -2.92 -0.02 3.93 16 21 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 22 N -0.94 -60.29 13.29 21.45 0.28 -60.00 16 23 Si 0.98 45.28 29.54 68.60 2.03 47.30 16 24 H -0.25 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 27 C 0.10 2.35 7.52 86.28 0.65 3.00 16 28 H 0.10 0.84 7.86 -2.39 -0.02 0.82 16 29 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.47 6.81 -2.39 -0.02 0.46 16 32 H 0.10 0.31 5.67 -2.39 -0.01 0.30 16 33 H 0.10 0.25 8.02 -2.39 -0.02 0.24 16 34 H 0.05 1.00 7.69 -2.39 -0.02 0.98 16 35 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 0.79 7.79 -2.39 -0.02 0.77 16 37 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.40 8.01 -2.39 -0.02 1.38 16 39 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 2.46 5.42 -2.38 -0.01 2.45 16 41 H 0.09 2.12 7.74 -2.39 -0.02 2.10 16 42 H 0.09 3.76 8.14 -2.39 -0.02 3.74 16 43 H 0.10 3.95 8.14 -2.39 -0.02 3.93 16 44 H -0.01 -0.90 8.10 -2.39 -0.02 -0.92 16 45 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 46 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 47 H 0.09 1.96 8.09 -2.39 -0.02 1.94 16 48 H 0.09 1.91 4.58 -2.39 -0.01 1.90 16 Total: -1.00 -85.05 376.90 3.21 -81.83 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.95 Total: 10.26 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 6.91 Total: 8.09 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -4.98 Total: -94.33 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -1.69 Total: -53.15 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -85.05 3.21 -81.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271769397.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.300 kcal (2) G-P(sol) polarization free energy of solvation -85.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds