Wall clock time and date at job start Fri Apr 10 2020 18:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45203 * 109.47529 * 2 1 4 4 C 1.34225 * 117.00134 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99941 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99740 * 179.97438 * 4 3 2 7 7 N 1.46904 * 109.46971 * 174.28756 * 6 4 3 8 8 C 1.48142 * 111.00211 * 293.67522 * 7 6 4 9 9 C 1.54080 * 107.15047 * 215.68658 * 8 7 6 10 10 C 1.54813 * 105.20142 * 1.07027 * 9 8 7 11 11 C 1.47183 * 111.00061 * 176.36698 * 7 6 4 12 12 C 1.53429 * 111.49544 * 278.29612 * 11 7 6 13 13 C 1.54751 * 101.46465 * 145.74642 * 12 11 7 14 14 N 1.46906 * 105.52436 * 335.63162 * 13 12 11 15 15 C 1.46497 * 124.37258 * 196.81108 * 14 13 12 16 16 C 1.53000 * 109.47507 * 270.00221 * 15 14 13 17 17 C 1.50697 * 109.47614 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00002 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00148 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99908 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99869 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47090 * 90.00206 * 21 19 17 23 23 H 1.48500 * 109.46764 * 210.00398 * 21 19 17 24 24 H 1.48498 * 109.47194 * 329.99837 * 21 19 17 25 25 C 1.34809 * 111.24694 * 16.79156 * 14 13 12 26 26 O 1.21286 * 125.16504 * 178.90804 * 25 14 13 27 27 H 1.09000 * 109.47610 * 300.00523 * 1 2 3 28 28 H 1.09011 * 109.46930 * 60.00162 * 1 2 3 29 29 H 1.08997 * 109.47321 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47610 * 239.99477 * 2 1 3 31 31 H 1.09011 * 109.46930 * 119.99838 * 2 1 3 32 32 H 1.08995 * 109.47379 * 294.29147 * 6 4 3 33 33 H 1.09004 * 109.46958 * 54.29253 * 6 4 3 34 34 H 1.08998 * 109.89827 * 335.06936 * 8 7 6 35 35 H 1.08999 * 109.90197 * 96.12529 * 8 7 6 36 36 H 1.08999 * 110.29369 * 120.00480 * 9 8 7 37 37 H 1.08997 * 110.29208 * 242.13704 * 9 8 7 38 38 H 1.09003 * 110.74733 * 139.10452 * 10 9 8 39 39 H 1.09004 * 110.74848 * 262.27256 * 10 9 8 40 40 H 1.08996 * 111.02221 * 263.79135 * 12 11 7 41 41 H 1.09000 * 111.02576 * 27.69840 * 12 11 7 42 42 H 1.08999 * 110.23476 * 216.62231 * 13 12 11 43 43 H 1.08996 * 110.23508 * 94.64254 * 13 12 11 44 44 H 1.09000 * 109.47384 * 30.00104 * 15 14 13 45 45 H 1.09004 * 109.47102 * 150.00301 * 15 14 13 46 46 H 1.09000 * 109.46703 * 300.00299 * 16 15 14 47 47 H 1.08998 * 109.46979 * 59.99516 * 16 15 14 48 48 H 0.96996 * 120.00242 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9373 0.0000 7 7 5.3813 2.8631 0.1386 8 6 5.7622 2.3310 1.4677 9 6 7.0450 3.0663 1.9009 10 6 7.3495 4.0612 0.7545 11 6 5.9878 4.2016 0.0555 12 6 6.1581 4.6522 -1.4013 13 6 5.9156 6.1759 -1.2823 14 7 5.0964 6.3507 -0.0755 15 6 4.3359 7.5625 0.2396 16 6 5.2140 8.5201 1.0476 17 6 4.4316 9.7664 1.3723 18 1 3.4100 9.8655 1.0364 19 6 5.0196 10.7798 2.0991 20 7 6.2635 10.6590 2.5086 21 14 4.0494 12.3244 2.5022 22 1 3.3441 12.1423 3.7962 23 1 4.9772 13.4796 2.6023 24 1 3.0558 12.5792 1.4284 25 6 5.1345 5.2516 0.7042 26 8 4.5652 5.1299 1.7682 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 3.6694 3.4341 -0.9370 33 1 3.5049 3.5028 0.8340 34 1 4.9648 2.5215 2.1859 35 1 5.9508 1.2597 1.3983 36 1 6.8757 3.6044 2.8336 37 1 7.8660 2.3586 2.0154 38 1 7.6797 5.0204 1.1532 39 1 8.0954 3.6500 0.0742 40 1 7.1660 4.4434 -1.7598 41 1 5.4116 4.1864 -2.0445 42 1 5.3796 6.5419 -2.1580 43 1 6.8643 6.7013 -1.1732 44 1 4.0254 8.0476 -0.6858 45 1 3.4549 7.2969 0.8240 46 1 5.5245 8.0350 1.9730 47 1 6.0951 8.7856 0.4633 48 1 6.6771 11.3717 3.0202 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272889121.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:14 Heat of formation + Delta-G solvation = -110.323297 kcal Electronic energy + Delta-G solvation = -28913.361853 eV Core-core repulsion = 24968.464715 eV Total energy + Delta-G solvation = -3944.897138 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.44826 -40.34347 -37.66267 -36.56492 -36.16704 -33.67220 -32.77322 -31.87991 -31.82564 -29.15262 -27.73161 -27.27050 -25.16068 -23.72861 -23.27083 -21.94224 -21.64854 -20.81152 -20.32060 -18.66422 -17.78913 -16.91723 -16.70273 -16.49781 -16.16738 -15.66992 -15.46473 -15.25661 -14.69299 -14.60416 -14.43131 -13.87992 -13.51558 -13.44182 -13.13937 -12.86392 -12.74384 -12.70496 -12.58912 -12.40889 -12.12048 -11.99645 -11.83567 -11.75091 -11.49396 -11.36176 -11.27074 -10.97758 -10.81998 -10.75088 -10.72668 -10.63725 -10.48803 -10.06477 -9.89645 -9.79658 -9.26264 -8.42304 -8.38225 -8.07967 -6.05957 -4.09696 2.12173 2.36633 2.79032 3.29501 3.34738 3.37046 3.44267 3.79412 4.33331 4.41086 4.42518 4.56580 4.64475 4.65328 4.73465 4.85975 4.98498 4.98617 5.13512 5.14137 5.17041 5.30406 5.32747 5.40336 5.49059 5.55025 5.64012 5.69255 5.70289 5.84363 5.86981 5.93818 5.97266 5.99038 6.07380 6.18844 6.28219 6.38916 6.62816 6.68170 6.74833 6.90815 7.40850 7.61100 7.69231 7.77582 7.92936 8.28591 8.52097 8.96844 9.54695 11.05445 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014933 B = 0.003112 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.538665 B = 8994.080031 C = 9973.509897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.361 6.361 4 C 0.468 3.532 5 O -0.492 6.492 6 C 0.037 3.963 7 N -0.470 5.470 8 C 0.037 3.963 9 C -0.128 4.128 10 C -0.098 4.098 11 C 0.059 3.941 12 C -0.113 4.113 13 C 0.098 3.902 14 N -0.606 5.606 15 C 0.127 3.873 16 C 0.013 3.987 17 C -0.523 4.523 18 H 0.057 0.943 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.499 3.501 26 O -0.526 6.526 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.020 0.980 47 H 0.017 0.983 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.020 -19.660 -8.974 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.278 6.278 4 C 0.310 3.690 5 O -0.379 6.379 6 C -0.092 4.092 7 N -0.195 5.195 8 C -0.090 4.090 9 C -0.166 4.166 10 C -0.137 4.137 11 C -0.034 4.034 12 C -0.151 4.151 13 C -0.026 4.026 14 N -0.339 5.339 15 C 0.007 3.993 16 C -0.025 4.025 17 C -0.562 4.562 18 H 0.075 0.925 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 C 0.284 3.716 26 O -0.403 6.403 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.133 0.867 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.038 0.962 47 H 0.036 0.964 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.876 -20.223 -8.728 22.213 hybrid contribution -0.767 1.391 0.880 1.816 sum -3.644 -18.832 -7.847 20.724 Atomic orbital electron populations 1.21812 0.92604 1.02899 1.03704 1.23005 0.95364 0.80173 1.02521 1.86510 1.24555 1.32431 1.84261 1.23424 0.80473 0.92436 0.72656 1.90645 1.60184 1.42728 1.44298 1.22006 0.90000 0.91224 1.05968 1.64591 1.06227 1.17253 1.31385 1.22995 0.97302 1.00321 0.88401 1.22437 0.97265 0.97994 0.98901 1.22248 0.93728 1.00460 0.97250 1.22177 0.96012 0.88027 0.97217 1.22509 1.04145 0.94235 0.94239 1.22200 0.96300 0.95773 0.88303 1.48708 1.47493 1.15777 1.21942 1.21848 0.94810 0.82712 0.99949 1.19394 0.94995 0.92962 0.95171 1.21076 0.98981 1.01387 1.34763 0.92481 1.24999 0.94934 0.98653 0.95650 1.69967 1.12348 1.33496 1.37312 0.86551 0.79783 0.82544 0.78877 1.20574 1.21175 1.19784 1.20904 0.81769 0.84263 0.84709 1.90694 1.47698 1.81083 1.20836 0.91358 0.91417 0.90264 0.91248 0.91292 0.86735 0.88318 0.92959 0.89315 0.90788 0.90704 0.90018 0.89458 0.88604 0.89677 0.90267 0.90641 0.91474 0.91158 0.96160 0.96419 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.29 37.15 0.38 -0.66 16 2 C 0.06 0.59 6.19 37.15 0.23 0.82 16 3 O -0.36 -4.42 10.22 -39.24 -0.40 -4.82 16 4 C 0.47 6.31 7.65 36.01 0.28 6.59 16 5 O -0.49 -7.46 14.85 -18.75 -0.28 -7.73 16 6 C 0.04 0.49 4.51 -4.97 -0.02 0.47 16 7 N -0.47 -6.36 4.69 -219.45 -1.03 -7.39 16 8 C 0.04 0.51 5.14 -2.57 -0.01 0.50 16 9 C -0.13 -1.61 6.86 -25.21 -0.17 -1.79 16 10 C -0.10 -1.23 5.99 -25.41 -0.15 -1.38 16 11 C 0.06 0.80 0.55 -132.32 -0.07 0.72 16 12 C -0.11 -1.21 6.35 -25.59 -0.16 -1.37 16 13 C 0.10 1.24 7.37 -2.90 -0.02 1.22 16 14 N -0.61 -10.45 2.95 -172.54 -0.51 -10.96 16 15 C 0.13 2.59 5.88 -4.04 -0.02 2.57 16 16 C 0.01 0.33 5.30 -27.88 -0.15 0.18 16 17 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 21 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.50 8.78 5.51 -11.29 -0.06 8.72 16 26 O -0.53 -11.16 15.38 5.55 0.09 -11.07 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 32 H 0.11 1.35 7.38 -51.93 -0.38 0.97 16 33 H 0.10 1.53 5.76 -51.93 -0.30 1.23 16 34 H 0.05 0.79 7.47 -51.93 -0.39 0.41 16 35 H 0.09 1.20 7.42 -51.93 -0.39 0.81 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.13 8.01 -51.93 -0.42 0.71 16 39 H 0.09 0.89 7.78 -51.93 -0.40 0.48 16 40 H 0.10 0.82 7.64 -51.93 -0.40 0.42 16 41 H 0.08 0.83 7.39 -51.93 -0.38 0.44 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.07 1.52 7.95 -51.93 -0.41 1.10 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 384.92 15.07 5.80 5.80 Total: -1.00 -33.89 384.92 -9.07 -42.96 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -8.08 Total: -0.48 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -0.37 Total: 3.23 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.80 Total: -44.38 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.59 Total: -23.63 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.89 -9.07 -42.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272889121.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.361 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds