Wall clock time and date at job start Fri Apr 10 2020 18:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45203 * 109.47529 * 2 1 4 4 C 1.34225 * 117.00134 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99941 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99740 * 179.97438 * 4 3 2 7 7 N 1.46904 * 109.46971 * 174.28756 * 6 4 3 8 8 C 1.48142 * 111.00211 * 293.67522 * 7 6 4 9 9 C 1.54080 * 107.15047 * 215.68658 * 8 7 6 10 10 C 1.54813 * 105.20142 * 1.07027 * 9 8 7 11 11 C 1.47183 * 111.00061 * 176.36698 * 7 6 4 12 12 C 1.53429 * 111.49544 * 278.29612 * 11 7 6 13 13 C 1.54751 * 101.46465 * 145.74642 * 12 11 7 14 14 N 1.46906 * 105.52436 * 335.63162 * 13 12 11 15 15 C 1.46497 * 124.37258 * 196.81108 * 14 13 12 16 16 C 1.53000 * 109.47507 * 270.00221 * 15 14 13 17 17 C 1.50697 * 109.47614 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00002 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00148 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99908 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99869 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47090 * 90.00206 * 21 19 17 23 23 H 1.48500 * 109.46764 * 210.00398 * 21 19 17 24 24 H 1.48498 * 109.47194 * 329.99837 * 21 19 17 25 25 C 1.34809 * 111.24694 * 16.79156 * 14 13 12 26 26 O 1.21286 * 125.16504 * 178.90804 * 25 14 13 27 27 H 1.09000 * 109.47610 * 300.00523 * 1 2 3 28 28 H 1.09011 * 109.46930 * 60.00162 * 1 2 3 29 29 H 1.08997 * 109.47321 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47610 * 239.99477 * 2 1 3 31 31 H 1.09011 * 109.46930 * 119.99838 * 2 1 3 32 32 H 1.08995 * 109.47379 * 294.29147 * 6 4 3 33 33 H 1.09004 * 109.46958 * 54.29253 * 6 4 3 34 34 H 1.08998 * 109.89827 * 335.06936 * 8 7 6 35 35 H 1.08999 * 109.90197 * 96.12529 * 8 7 6 36 36 H 1.08999 * 110.29369 * 120.00480 * 9 8 7 37 37 H 1.08997 * 110.29208 * 242.13704 * 9 8 7 38 38 H 1.09003 * 110.74733 * 139.10452 * 10 9 8 39 39 H 1.09004 * 110.74848 * 262.27256 * 10 9 8 40 40 H 1.08996 * 111.02221 * 263.79135 * 12 11 7 41 41 H 1.09000 * 111.02576 * 27.69840 * 12 11 7 42 42 H 1.08999 * 110.23476 * 216.62231 * 13 12 11 43 43 H 1.08996 * 110.23508 * 94.64254 * 13 12 11 44 44 H 1.09000 * 109.47384 * 30.00104 * 15 14 13 45 45 H 1.09004 * 109.47102 * 150.00301 * 15 14 13 46 46 H 1.09000 * 109.46703 * 300.00299 * 16 15 14 47 47 H 1.08998 * 109.46979 * 59.99516 * 16 15 14 48 48 H 0.96996 * 120.00242 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9373 0.0000 7 7 5.3813 2.8631 0.1386 8 6 5.7622 2.3310 1.4677 9 6 7.0450 3.0663 1.9009 10 6 7.3495 4.0612 0.7545 11 6 5.9878 4.2016 0.0555 12 6 6.1581 4.6522 -1.4013 13 6 5.9156 6.1759 -1.2823 14 7 5.0964 6.3507 -0.0755 15 6 4.3359 7.5625 0.2396 16 6 5.2140 8.5201 1.0476 17 6 4.4316 9.7664 1.3723 18 1 3.4100 9.8655 1.0364 19 6 5.0196 10.7798 2.0991 20 7 6.2635 10.6590 2.5086 21 14 4.0494 12.3244 2.5022 22 1 3.3441 12.1423 3.7962 23 1 4.9772 13.4796 2.6023 24 1 3.0558 12.5792 1.4284 25 6 5.1345 5.2516 0.7042 26 8 4.5652 5.1299 1.7682 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 3.6694 3.4341 -0.9370 33 1 3.5049 3.5028 0.8340 34 1 4.9648 2.5215 2.1859 35 1 5.9508 1.2597 1.3983 36 1 6.8757 3.6044 2.8336 37 1 7.8660 2.3586 2.0154 38 1 7.6797 5.0204 1.1532 39 1 8.0954 3.6500 0.0742 40 1 7.1660 4.4434 -1.7598 41 1 5.4116 4.1864 -2.0445 42 1 5.3796 6.5419 -2.1580 43 1 6.8643 6.7013 -1.1732 44 1 4.0254 8.0476 -0.6858 45 1 3.4549 7.2969 0.8240 46 1 5.5245 8.0350 1.9730 47 1 6.0951 8.7856 0.4633 48 1 6.6771 11.3717 3.0202 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272889121.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:13 Heat of formation + Delta-G solvation = -132.676941 kcal Electronic energy + Delta-G solvation = -28914.331180 eV Core-core repulsion = 24968.464715 eV Total energy + Delta-G solvation = -3945.866465 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.62067 -41.40362 -38.87489 -37.64964 -37.54019 -35.59630 -33.85088 -33.49510 -32.56195 -30.81224 -28.85757 -28.29611 -27.01191 -24.85273 -24.11628 -23.58818 -22.66230 -21.93037 -21.64713 -19.97190 -18.83394 -18.68976 -17.92527 -17.57596 -17.41785 -16.94127 -16.80132 -16.47661 -16.40097 -15.69991 -15.60534 -14.97680 -14.87089 -14.58337 -14.50054 -14.28853 -13.92186 -13.87908 -13.68377 -13.55803 -13.32712 -13.17388 -12.98615 -12.89786 -12.73874 -12.57899 -12.53845 -12.50417 -12.30472 -12.03439 -11.90797 -11.87878 -11.56736 -11.56316 -11.54630 -11.40921 -11.04679 -10.61429 -9.71084 -9.47994 -8.24853 -6.37498 1.05564 1.37994 1.39025 1.40660 1.47235 1.51644 2.07542 2.40230 2.70885 3.09031 3.28448 3.38753 3.50081 3.68638 3.83898 3.95943 3.99811 4.04511 4.05892 4.12739 4.18613 4.27067 4.31067 4.31771 4.49147 4.63384 4.65225 4.73981 4.77714 4.79214 4.86192 4.89048 4.90694 5.00601 5.05538 5.10347 5.14094 5.16898 5.31185 5.38372 5.44188 5.52165 5.58839 5.59631 5.81110 6.13910 6.23247 6.66287 6.78099 7.12588 7.32522 8.87269 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014933 B = 0.003112 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.538665 B = 8994.080031 C = 9973.509897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.368 6.368 4 C 0.474 3.526 5 O -0.511 6.511 6 C 0.038 3.962 7 N -0.460 5.460 8 C 0.039 3.961 9 C -0.127 4.127 10 C -0.097 4.097 11 C 0.061 3.939 12 C -0.098 4.098 13 C 0.091 3.909 14 N -0.613 5.613 15 C 0.142 3.858 16 C 0.025 3.975 17 C -0.545 4.545 18 H 0.067 0.933 19 C 0.001 3.999 20 N -0.933 5.933 21 Si 0.968 3.032 22 H -0.278 1.278 23 H -0.280 1.280 24 H -0.256 1.256 25 C 0.487 3.513 26 O -0.575 6.575 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.134 0.866 33 H 0.074 0.926 34 H 0.026 0.974 35 H 0.094 0.906 36 H 0.048 0.952 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.052 0.948 46 H -0.029 1.029 47 H 0.002 0.998 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.333 -20.214 -11.430 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 O -0.285 6.285 4 C 0.316 3.684 5 O -0.398 6.398 6 C -0.090 4.090 7 N -0.184 5.184 8 C -0.088 4.088 9 C -0.165 4.165 10 C -0.136 4.136 11 C -0.032 4.032 12 C -0.135 4.135 13 C -0.031 4.031 14 N -0.345 5.345 15 C 0.021 3.979 16 C -0.013 4.013 17 C -0.583 4.583 18 H 0.085 0.915 19 C -0.197 4.197 20 N -0.572 5.572 21 Si 0.792 3.208 22 H -0.203 1.203 23 H -0.205 1.205 24 H -0.180 1.180 25 C 0.274 3.726 26 O -0.455 6.455 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.122 0.878 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.152 0.848 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.121 0.879 38 H 0.081 0.919 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.071 0.929 46 H -0.010 1.010 47 H 0.020 0.980 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.192 -20.792 -11.227 23.844 hybrid contribution -0.692 1.518 1.694 2.377 sum -3.884 -19.274 -9.533 21.851 Atomic orbital electron populations 1.21842 0.90546 1.04496 1.03584 1.23323 0.96989 0.78750 1.02795 1.86509 1.23769 1.34360 1.83827 1.23342 0.80827 0.92083 0.72129 1.90628 1.60669 1.43184 1.45362 1.21986 0.89873 0.91301 1.05877 1.64691 1.06224 1.16747 1.30748 1.22960 0.96994 1.00693 0.88177 1.22443 0.97689 0.98395 0.97983 1.22344 0.93912 0.99635 0.97669 1.22286 0.95386 0.86556 0.98977 1.22598 1.06747 0.92132 0.92046 1.22540 0.95859 0.97646 0.87057 1.48787 1.47612 1.14507 1.23600 1.21394 0.93340 0.83230 0.99984 1.19197 0.95178 0.93455 0.93494 1.21555 0.99628 1.02239 1.34867 0.91500 1.26003 0.95950 1.02417 0.95367 1.70107 1.14232 1.34789 1.38117 0.85399 0.78475 0.77994 0.78907 1.20345 1.20528 1.17993 1.21774 0.81441 0.85306 0.84101 1.90659 1.49626 1.82122 1.23055 0.91850 0.91128 0.87782 0.90560 0.91470 0.84811 0.90862 0.95521 0.88814 0.93272 0.87895 0.91883 0.85805 0.85262 0.87915 0.87612 0.90649 0.88784 0.92939 1.01040 0.97982 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.29 71.98 0.74 -1.05 16 2 C 0.05 0.97 6.19 71.98 0.45 1.42 16 3 O -0.37 -8.89 10.22 -51.36 -0.52 -9.42 16 4 C 0.47 12.60 7.65 71.24 0.55 13.15 16 5 O -0.51 -15.12 14.85 21.95 0.33 -14.79 16 6 C 0.04 1.02 4.51 85.56 0.39 1.41 16 7 N -0.46 -11.98 4.69 -848.22 -3.98 -15.96 16 8 C 0.04 1.09 5.14 86.43 0.44 1.53 16 9 C -0.13 -3.19 6.86 31.58 0.22 -2.97 16 10 C -0.10 -2.31 5.99 31.45 0.19 -2.12 16 11 C 0.06 1.58 0.55 2.91 0.00 1.59 16 12 C -0.10 -1.74 6.35 31.34 0.20 -1.54 16 13 C 0.09 2.09 7.37 86.90 0.64 2.73 16 14 N -0.61 -21.13 2.95 -818.17 -2.41 -23.54 16 15 C 0.14 5.90 5.88 86.38 0.51 6.41 16 16 C 0.02 1.32 5.30 29.85 0.16 1.48 16 17 C -0.54 -31.00 9.11 25.60 0.23 -30.77 16 18 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 19 C 0.00 0.04 5.46 84.66 0.46 0.51 16 20 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 21 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 25 C 0.49 17.56 5.51 87.45 0.48 18.04 16 26 O -0.57 -25.97 15.38 -3.05 -0.05 -26.02 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 1.25 8.13 -2.39 -0.02 1.23 16 31 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.13 2.96 7.38 -2.39 -0.02 2.94 16 33 H 0.07 2.39 5.76 -2.39 -0.01 2.38 16 34 H 0.03 0.86 7.47 -2.39 -0.02 0.84 16 35 H 0.09 2.49 7.42 -2.39 -0.02 2.47 16 36 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 1.75 8.01 -2.39 -0.02 1.73 16 39 H 0.12 2.06 7.78 -2.38 -0.02 2.04 16 40 H 0.13 1.54 7.64 -2.39 -0.02 1.52 16 41 H 0.10 1.54 7.39 -2.39 -0.02 1.52 16 42 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 45 H 0.05 2.34 7.95 -2.39 -0.02 2.33 16 46 H -0.03 -1.80 8.14 -2.39 -0.02 -1.82 16 47 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 48 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -77.53 384.92 2.26 -75.27 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.94 Total: 15.44 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 5.65 Total: 9.81 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -6.10 Total: -96.60 kcal Atomic # 8 Polarization: -49.98 SS G_CDS: -0.25 Total: -50.23 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -77.53 2.26 -75.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272889121.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.406 kcal (2) G-P(sol) polarization free energy of solvation -77.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds